Experiment: (+)-Arabinogalactan 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05075 and HMPREF1058_RS05070 are separated by 150 nucleotides HMPREF1058_RS05070 and HMPREF1058_RS05065 are separated by 22 nucleotides HMPREF1058_RS05065 and HMPREF1058_RS05060 are separated by 265 nucleotides
HMPREF1058_RS05075: HMPREF1058_RS05075 - hypothetical protein, at 252,336 to 252,821
_RS05075
HMPREF1058_RS05070: HMPREF1058_RS05070 - hypothetical protein, at 252,972 to 253,466
_RS05070
HMPREF1058_RS05065: HMPREF1058_RS05065 - WG repeat-containing protein, at 253,489 to 255,183
_RS05065
HMPREF1058_RS05060: HMPREF1058_RS05060 - response regulator transcription factor, at 255,449 to 256,213
_RS05060
Position (kb) 253
254
255
256 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 252.517 kb on + strand, within HMPREF1058_RS05075 at 252.642 kb on - strand, within HMPREF1058_RS05075 at 252.921 kb on + strand at 252.964 kb on + strand at 252.964 kb on + strand at 252.964 kb on + strand at 252.964 kb on + strand at 252.964 kb on + strand at 252.965 kb on - strand at 252.965 kb on - strand at 252.965 kb on - strand at 252.968 kb on + strand at 252.968 kb on + strand at 252.987 kb on + strand at 252.996 kb on - strand at 252.996 kb on - strand at 253.127 kb on - strand, within HMPREF1058_RS05070 at 253.127 kb on - strand, within HMPREF1058_RS05070 at 253.187 kb on + strand, within HMPREF1058_RS05070 at 253.248 kb on + strand, within HMPREF1058_RS05070 at 253.332 kb on - strand, within HMPREF1058_RS05070 at 253.345 kb on - strand, within HMPREF1058_RS05070 at 253.345 kb on - strand, within HMPREF1058_RS05070 at 253.427 kb on + strand at 253.427 kb on + strand at 253.436 kb on + strand at 253.484 kb on - strand at 253.485 kb on + strand at 253.486 kb on - strand at 253.488 kb on - strand at 253.551 kb on - strand at 253.603 kb on + strand at 253.604 kb on - strand at 253.604 kb on - strand at 253.610 kb on + strand at 253.632 kb on + strand at 253.647 kb on + strand at 253.648 kb on - strand at 253.654 kb on - strand at 253.654 kb on - strand at 253.678 kb on + strand, within HMPREF1058_RS05065 at 253.678 kb on + strand, within HMPREF1058_RS05065 at 253.747 kb on - strand, within HMPREF1058_RS05065 at 253.765 kb on - strand, within HMPREF1058_RS05065 at 253.796 kb on + strand, within HMPREF1058_RS05065 at 253.919 kb on + strand, within HMPREF1058_RS05065 at 253.953 kb on - strand, within HMPREF1058_RS05065 at 254.094 kb on + strand, within HMPREF1058_RS05065 at 254.152 kb on - strand, within HMPREF1058_RS05065 at 254.155 kb on + strand, within HMPREF1058_RS05065 at 254.155 kb on + strand, within HMPREF1058_RS05065 at 254.156 kb on - strand, within HMPREF1058_RS05065 at 254.156 kb on - strand, within HMPREF1058_RS05065 at 254.157 kb on + strand, within HMPREF1058_RS05065 at 254.180 kb on - strand, within HMPREF1058_RS05065 at 254.196 kb on + strand, within HMPREF1058_RS05065 at 254.200 kb on - strand, within HMPREF1058_RS05065 at 254.201 kb on + strand, within HMPREF1058_RS05065 at 254.201 kb on + strand, within HMPREF1058_RS05065 at 254.201 kb on + strand at 254.201 kb on + strand, within HMPREF1058_RS05065 at 254.253 kb on - strand, within HMPREF1058_RS05065 at 254.283 kb on + strand, within HMPREF1058_RS05065 at 254.283 kb on + strand, within HMPREF1058_RS05065 at 254.283 kb on - strand, within HMPREF1058_RS05065 at 254.286 kb on + strand, within HMPREF1058_RS05065 at 254.294 kb on + strand, within HMPREF1058_RS05065 at 254.294 kb on + strand, within HMPREF1058_RS05065 at 254.295 kb on - strand, within HMPREF1058_RS05065 at 254.296 kb on + strand, within HMPREF1058_RS05065 at 254.296 kb on + strand, within HMPREF1058_RS05065 at 254.297 kb on - strand, within HMPREF1058_RS05065 at 254.353 kb on + strand, within HMPREF1058_RS05065 at 254.356 kb on + strand, within HMPREF1058_RS05065 at 254.358 kb on + strand, within HMPREF1058_RS05065 at 254.359 kb on - strand, within HMPREF1058_RS05065 at 254.359 kb on - strand, within HMPREF1058_RS05065 at 254.377 kb on - strand, within HMPREF1058_RS05065 at 254.401 kb on + strand, within HMPREF1058_RS05065 at 254.415 kb on + strand, within HMPREF1058_RS05065 at 254.511 kb on + strand, within HMPREF1058_RS05065 at 254.578 kb on + strand, within HMPREF1058_RS05065 at 254.592 kb on + strand, within HMPREF1058_RS05065 at 254.623 kb on - strand, within HMPREF1058_RS05065 at 254.625 kb on - strand, within HMPREF1058_RS05065 at 254.628 kb on + strand, within HMPREF1058_RS05065 at 254.673 kb on + strand, within HMPREF1058_RS05065 at 254.691 kb on + strand, within HMPREF1058_RS05065 at 254.766 kb on + strand, within HMPREF1058_RS05065 at 254.823 kb on + strand, within HMPREF1058_RS05065 at 254.824 kb on - strand, within HMPREF1058_RS05065 at 254.824 kb on - strand, within HMPREF1058_RS05065 at 254.854 kb on + strand, within HMPREF1058_RS05065 at 254.869 kb on + strand, within HMPREF1058_RS05065 at 254.869 kb on + strand, within HMPREF1058_RS05065 at 254.869 kb on + strand, within HMPREF1058_RS05065 at 254.946 kb on - strand, within HMPREF1058_RS05065 at 254.976 kb on - strand, within HMPREF1058_RS05065 at 255.016 kb on - strand at 255.030 kb on - strand at 255.054 kb on + strand at 255.131 kb on - strand at 255.131 kb on - strand at 255.145 kb on + strand at 255.179 kb on + strand at 255.305 kb on + strand at 255.305 kb on + strand at 255.307 kb on + strand at 255.307 kb on + strand at 255.307 kb on + strand at 255.308 kb on - strand at 255.308 kb on - strand at 255.309 kb on + strand at 255.343 kb on - strand at 255.349 kb on + strand at 255.416 kb on + strand at 255.424 kb on - strand at 255.441 kb on + strand at 255.584 kb on - strand, within HMPREF1058_RS05060 at 255.585 kb on + strand, within HMPREF1058_RS05060 at 255.585 kb on + strand, within HMPREF1058_RS05060 at 255.585 kb on + strand, within HMPREF1058_RS05060 at 255.585 kb on + strand, within HMPREF1058_RS05060 at 255.585 kb on + strand, within HMPREF1058_RS05060 at 255.629 kb on - strand, within HMPREF1058_RS05060 at 255.629 kb on - strand, within HMPREF1058_RS05060 at 255.629 kb on - strand, within HMPREF1058_RS05060 at 255.629 kb on - strand, within HMPREF1058_RS05060 at 255.640 kb on + strand, within HMPREF1058_RS05060 at 255.711 kb on + strand, within HMPREF1058_RS05060 at 255.776 kb on - strand, within HMPREF1058_RS05060 at 255.798 kb on + strand, within HMPREF1058_RS05060 at 255.799 kb on - strand, within HMPREF1058_RS05060 at 255.891 kb on - strand, within HMPREF1058_RS05060 at 255.893 kb on - strand, within HMPREF1058_RS05060 at 255.934 kb on - strand, within HMPREF1058_RS05060 at 255.946 kb on + strand, within HMPREF1058_RS05060 at 255.946 kb on + strand, within HMPREF1058_RS05060 at 255.958 kb on + strand, within HMPREF1058_RS05060 at 255.960 kb on + strand, within HMPREF1058_RS05060 at 255.961 kb on - strand, within HMPREF1058_RS05060 at 255.961 kb on - strand, within HMPREF1058_RS05060 at 255.976 kb on + strand, within HMPREF1058_RS05060 at 256.132 kb on + strand, within HMPREF1058_RS05060 at 256.135 kb on - strand, within HMPREF1058_RS05060
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan 5 mg/ml (C) remove 252,517 + HMPREF1058_RS05075 0.37 -1.0 252,642 - HMPREF1058_RS05075 0.63 +0.9 252,921 + +0.7 252,964 + -1.3 252,964 + -0.3 252,964 + -0.9 252,964 + +2.1 252,964 + +0.9 252,965 - -1.2 252,965 - -0.3 252,965 - -1.1 252,968 + +2.9 252,968 + +0.1 252,987 + +0.5 252,996 - -1.1 252,996 - -0.5 253,127 - HMPREF1058_RS05070 0.31 -0.6 253,127 - HMPREF1058_RS05070 0.31 +0.4 253,187 + HMPREF1058_RS05070 0.43 -0.7 253,248 + HMPREF1058_RS05070 0.56 -0.2 253,332 - HMPREF1058_RS05070 0.73 +1.3 253,345 - HMPREF1058_RS05070 0.75 -0.1 253,345 - HMPREF1058_RS05070 0.75 -1.7 253,427 + +0.1 253,427 + -1.4 253,436 + +1.1 253,484 - -1.2 253,485 + +0.1 253,486 - +0.3 253,488 - -0.8 253,551 - +0.5 253,603 + +1.5 253,604 - +0.7 253,604 - -3.1 253,610 + +0.3 253,632 + -1.5 253,647 + -1.6 253,648 - -1.5 253,654 - -1.3 253,654 - -1.1 253,678 + HMPREF1058_RS05065 0.11 +0.5 253,678 + HMPREF1058_RS05065 0.11 +1.9 253,747 - HMPREF1058_RS05065 0.15 +0.7 253,765 - HMPREF1058_RS05065 0.16 +0.1 253,796 + HMPREF1058_RS05065 0.18 -0.8 253,919 + HMPREF1058_RS05065 0.25 +0.5 253,953 - HMPREF1058_RS05065 0.27 -0.5 254,094 + HMPREF1058_RS05065 0.36 -1.0 254,152 - HMPREF1058_RS05065 0.39 +0.2 254,155 + HMPREF1058_RS05065 0.39 +0.7 254,155 + HMPREF1058_RS05065 0.39 -1.5 254,156 - HMPREF1058_RS05065 0.39 +0.1 254,156 - HMPREF1058_RS05065 0.39 -1.1 254,157 + HMPREF1058_RS05065 0.39 +1.3 254,180 - HMPREF1058_RS05065 0.41 -0.3 254,196 + HMPREF1058_RS05065 0.42 -1.0 254,200 - HMPREF1058_RS05065 0.42 +0.1 254,201 + HMPREF1058_RS05065 0.42 +0.1 254,201 + HMPREF1058_RS05065 0.42 -1.6 254,201 + +2.3 254,201 + HMPREF1058_RS05065 0.42 +0.1 254,253 - HMPREF1058_RS05065 0.45 -0.7 254,283 + HMPREF1058_RS05065 0.47 -0.7 254,283 + HMPREF1058_RS05065 0.47 -0.5 254,283 - HMPREF1058_RS05065 0.47 -2.1 254,286 + HMPREF1058_RS05065 0.47 +0.0 254,294 + HMPREF1058_RS05065 0.47 -1.2 254,294 + HMPREF1058_RS05065 0.47 -0.5 254,295 - HMPREF1058_RS05065 0.48 -0.5 254,296 + HMPREF1058_RS05065 0.48 -0.0 254,296 + HMPREF1058_RS05065 0.48 -1.4 254,297 - HMPREF1058_RS05065 0.48 -1.0 254,353 + HMPREF1058_RS05065 0.51 -1.1 254,356 + HMPREF1058_RS05065 0.51 -1.1 254,358 + HMPREF1058_RS05065 0.51 -1.9 254,359 - HMPREF1058_RS05065 0.51 -0.5 254,359 - HMPREF1058_RS05065 0.51 +1.3 254,377 - HMPREF1058_RS05065 0.52 -0.6 254,401 + HMPREF1058_RS05065 0.54 -0.3 254,415 + HMPREF1058_RS05065 0.55 +1.1 254,511 + HMPREF1058_RS05065 0.60 +0.7 254,578 + HMPREF1058_RS05065 0.64 -0.1 254,592 + HMPREF1058_RS05065 0.65 +0.9 254,623 - HMPREF1058_RS05065 0.67 +0.4 254,625 - HMPREF1058_RS05065 0.67 -0.8 254,628 + HMPREF1058_RS05065 0.67 +1.3 254,673 + HMPREF1058_RS05065 0.70 -0.0 254,691 + HMPREF1058_RS05065 0.71 -0.6 254,766 + HMPREF1058_RS05065 0.75 -0.1 254,823 + HMPREF1058_RS05065 0.79 -0.7 254,824 - HMPREF1058_RS05065 0.79 +3.0 254,824 - HMPREF1058_RS05065 0.79 -0.8 254,854 + HMPREF1058_RS05065 0.81 -0.7 254,869 + HMPREF1058_RS05065 0.81 -1.8 254,869 + HMPREF1058_RS05065 0.81 -2.0 254,869 + HMPREF1058_RS05065 0.81 +1.0 254,946 - HMPREF1058_RS05065 0.86 -1.3 254,976 - HMPREF1058_RS05065 0.88 -1.1 255,016 - +0.5 255,030 - +4.4 255,054 + +1.7 255,131 - +0.1 255,131 - -1.2 255,145 + +1.0 255,179 + -0.5 255,305 + +0.3 255,305 + -0.9 255,307 + -0.3 255,307 + -0.3 255,307 + +0.6 255,308 - -1.4 255,308 - +0.3 255,309 + -0.2 255,343 - +0.1 255,349 + -0.1 255,416 + -0.6 255,424 - +0.2 255,441 + -0.5 255,584 - HMPREF1058_RS05060 0.18 -0.8 255,585 + HMPREF1058_RS05060 0.18 -1.8 255,585 + HMPREF1058_RS05060 0.18 -0.1 255,585 + HMPREF1058_RS05060 0.18 -0.3 255,585 + HMPREF1058_RS05060 0.18 -0.0 255,585 + HMPREF1058_RS05060 0.18 +0.4 255,629 - HMPREF1058_RS05060 0.24 -0.9 255,629 - HMPREF1058_RS05060 0.24 -1.5 255,629 - HMPREF1058_RS05060 0.24 +2.8 255,629 - HMPREF1058_RS05060 0.24 -1.2 255,640 + HMPREF1058_RS05060 0.25 +0.7 255,711 + HMPREF1058_RS05060 0.34 -1.2 255,776 - HMPREF1058_RS05060 0.43 +0.3 255,798 + HMPREF1058_RS05060 0.46 -1.7 255,799 - HMPREF1058_RS05060 0.46 -1.0 255,891 - HMPREF1058_RS05060 0.58 -0.6 255,893 - HMPREF1058_RS05060 0.58 -3.7 255,934 - HMPREF1058_RS05060 0.63 -0.4 255,946 + HMPREF1058_RS05060 0.65 +0.1 255,946 + HMPREF1058_RS05060 0.65 +0.9 255,958 + HMPREF1058_RS05060 0.67 +0.8 255,960 + HMPREF1058_RS05060 0.67 -0.7 255,961 - HMPREF1058_RS05060 0.67 +0.1 255,961 - HMPREF1058_RS05060 0.67 -1.8 255,976 + HMPREF1058_RS05060 0.69 +0.3 256,132 + HMPREF1058_RS05060 0.89 -0.2 256,135 - HMPREF1058_RS05060 0.90 +0.3
Or see this region's nucleotide sequence