Experiment: (+)-Arabinogalactan 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04580 and HMPREF1058_RS04575 are separated by 18 nucleotides HMPREF1058_RS04575 and HMPREF1058_RS04570 overlap by 4 nucleotides HMPREF1058_RS04570 and HMPREF1058_RS04565 are separated by 15 nucleotides HMPREF1058_RS04565 and HMPREF1058_RS04560 are separated by 13 nucleotides
HMPREF1058_RS04580: HMPREF1058_RS04580 - hypothetical protein, at 5,777 to 6,175
_RS04580
HMPREF1058_RS04575: HMPREF1058_RS04575 - hypothetical protein, at 6,194 to 6,637
_RS04575
HMPREF1058_RS04570: HMPREF1058_RS04570 - DUF1351 domain-containing protein, at 6,634 to 7,710
_RS04570
HMPREF1058_RS04565: HMPREF1058_RS04565 - hypothetical protein, at 7,726 to 8,388
_RS04565
HMPREF1058_RS04560: HMPREF1058_RS04560 - hypothetical protein, at 8,402 to 8,863
_RS04560
Position (kb) 6
7
8 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5.686 kb on + strand at 5.763 kb on + strand at 5.763 kb on + strand at 5.837 kb on + strand, within HMPREF1058_RS04580 at 5.908 kb on + strand, within HMPREF1058_RS04580 at 5.908 kb on + strand, within HMPREF1058_RS04580 at 5.926 kb on + strand, within HMPREF1058_RS04580 at 5.926 kb on + strand, within HMPREF1058_RS04580 at 6.282 kb on + strand, within HMPREF1058_RS04575 at 6.375 kb on + strand, within HMPREF1058_RS04575 at 6.494 kb on + strand, within HMPREF1058_RS04575 at 6.572 kb on + strand, within HMPREF1058_RS04575 at 6.594 kb on + strand at 6.740 kb on + strand at 6.876 kb on + strand, within HMPREF1058_RS04570 at 7.148 kb on + strand, within HMPREF1058_RS04570 at 7.151 kb on + strand, within HMPREF1058_RS04570 at 7.155 kb on + strand, within HMPREF1058_RS04570 at 7.243 kb on + strand, within HMPREF1058_RS04570 at 7.364 kb on + strand, within HMPREF1058_RS04570 at 7.581 kb on + strand, within HMPREF1058_RS04570 at 7.586 kb on + strand, within HMPREF1058_RS04570 at 7.638 kb on + strand at 7.638 kb on + strand at 7.696 kb on + strand at 7.697 kb on - strand at 7.752 kb on + strand at 7.795 kb on + strand at 7.795 kb on + strand, within HMPREF1058_RS04565 at 7.829 kb on + strand, within HMPREF1058_RS04565 at 7.854 kb on + strand, within HMPREF1058_RS04565 at 7.854 kb on + strand, within HMPREF1058_RS04565 at 7.958 kb on + strand, within HMPREF1058_RS04565 at 7.989 kb on + strand, within HMPREF1058_RS04565 at 8.248 kb on + strand, within HMPREF1058_RS04565 at 8.322 kb on + strand at 8.322 kb on + strand at 8.426 kb on + strand at 8.488 kb on + strand, within HMPREF1058_RS04560 at 8.579 kb on + strand, within HMPREF1058_RS04560 at 8.592 kb on + strand, within HMPREF1058_RS04560
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan 5 mg/ml (C) remove 5,686 + -0.6 5,763 + +0.1 5,763 + -0.3 5,837 + HMPREF1058_RS04580 0.15 -1.0 5,908 + HMPREF1058_RS04580 0.33 +0.4 5,908 + HMPREF1058_RS04580 0.33 -1.5 5,926 + HMPREF1058_RS04580 0.37 -0.8 5,926 + HMPREF1058_RS04580 0.37 +1.4 6,282 + HMPREF1058_RS04575 0.20 -0.8 6,375 + HMPREF1058_RS04575 0.41 -1.0 6,494 + HMPREF1058_RS04575 0.68 +1.2 6,572 + HMPREF1058_RS04575 0.85 +0.4 6,594 + -1.8 6,740 + -0.7 6,876 + HMPREF1058_RS04570 0.22 -2.1 7,148 + HMPREF1058_RS04570 0.48 +1.0 7,151 + HMPREF1058_RS04570 0.48 -0.5 7,155 + HMPREF1058_RS04570 0.48 -2.0 7,243 + HMPREF1058_RS04570 0.57 -0.9 7,364 + HMPREF1058_RS04570 0.68 +0.4 7,581 + HMPREF1058_RS04570 0.88 -0.8 7,586 + HMPREF1058_RS04570 0.88 -0.7 7,638 + +2.4 7,638 + -0.4 7,696 + -0.4 7,697 - -2.1 7,752 + +0.9 7,795 + +2.0 7,795 + HMPREF1058_RS04565 0.10 +0.4 7,829 + HMPREF1058_RS04565 0.16 -1.7 7,854 + HMPREF1058_RS04565 0.19 -2.6 7,854 + HMPREF1058_RS04565 0.19 -2.6 7,958 + HMPREF1058_RS04565 0.35 -0.5 7,989 + HMPREF1058_RS04565 0.40 +1.7 8,248 + HMPREF1058_RS04565 0.79 +0.1 8,322 + -1.0 8,322 + -0.7 8,426 + -1.5 8,488 + HMPREF1058_RS04560 0.19 -0.6 8,579 + HMPREF1058_RS04560 0.38 +0.2 8,592 + HMPREF1058_RS04560 0.41 +1.3
Or see this region's nucleotide sequence