Experiment: (+)-Arabinogalactan 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03365 and HMPREF1058_RS03360 overlap by 4 nucleotides HMPREF1058_RS03360 and HMPREF1058_RS03355 are separated by 13 nucleotides
HMPREF1058_RS03365: HMPREF1058_RS03365 - ABC transporter permease, at 296,275 to 298,698
_RS03365
HMPREF1058_RS03360: HMPREF1058_RS03360 - ABC transporter ATP-binding protein, at 298,695 to 299,405
_RS03360
HMPREF1058_RS03355: HMPREF1058_RS03355 - efflux RND transporter periplasmic adaptor subunit, at 299,419 to 300,669
_RS03355
Position (kb) 298
299
300 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 297.756 kb on + strand, within HMPREF1058_RS03365 at 297.757 kb on - strand, within HMPREF1058_RS03365 at 297.957 kb on - strand, within HMPREF1058_RS03365 at 297.989 kb on - strand, within HMPREF1058_RS03365 at 298.025 kb on + strand, within HMPREF1058_RS03365 at 298.026 kb on - strand, within HMPREF1058_RS03365 at 298.026 kb on - strand, within HMPREF1058_RS03365 at 298.029 kb on + strand, within HMPREF1058_RS03365 at 298.030 kb on - strand, within HMPREF1058_RS03365 at 298.031 kb on + strand, within HMPREF1058_RS03365 at 298.068 kb on + strand, within HMPREF1058_RS03365 at 298.088 kb on - strand, within HMPREF1058_RS03365 at 298.332 kb on - strand, within HMPREF1058_RS03365 at 298.395 kb on + strand, within HMPREF1058_RS03365 at 298.402 kb on + strand, within HMPREF1058_RS03365 at 298.412 kb on + strand, within HMPREF1058_RS03365 at 298.413 kb on - strand, within HMPREF1058_RS03365 at 298.539 kb on + strand at 298.540 kb on - strand at 298.592 kb on - strand at 298.699 kb on - strand at 298.778 kb on + strand, within HMPREF1058_RS03360 at 298.779 kb on - strand, within HMPREF1058_RS03360 at 298.789 kb on + strand, within HMPREF1058_RS03360 at 298.850 kb on + strand, within HMPREF1058_RS03360 at 298.895 kb on + strand, within HMPREF1058_RS03360 at 298.938 kb on + strand, within HMPREF1058_RS03360 at 299.072 kb on + strand, within HMPREF1058_RS03360 at 299.072 kb on + strand, within HMPREF1058_RS03360 at 299.072 kb on + strand, within HMPREF1058_RS03360 at 299.106 kb on + strand, within HMPREF1058_RS03360 at 299.130 kb on - strand, within HMPREF1058_RS03360 at 299.245 kb on - strand, within HMPREF1058_RS03360 at 299.257 kb on - strand, within HMPREF1058_RS03360 at 299.382 kb on - strand at 299.472 kb on + strand at 299.585 kb on + strand, within HMPREF1058_RS03355 at 299.585 kb on + strand, within HMPREF1058_RS03355 at 299.585 kb on + strand, within HMPREF1058_RS03355 at 299.585 kb on + strand, within HMPREF1058_RS03355 at 299.586 kb on - strand, within HMPREF1058_RS03355 at 299.586 kb on - strand, within HMPREF1058_RS03355 at 299.586 kb on - strand, within HMPREF1058_RS03355 at 299.959 kb on - strand, within HMPREF1058_RS03355 at 299.959 kb on - strand, within HMPREF1058_RS03355 at 300.026 kb on - strand, within HMPREF1058_RS03355 at 300.026 kb on - strand, within HMPREF1058_RS03355 at 300.028 kb on - strand, within HMPREF1058_RS03355 at 300.270 kb on + strand, within HMPREF1058_RS03355 at 300.274 kb on + strand, within HMPREF1058_RS03355 at 300.274 kb on + strand, within HMPREF1058_RS03355 at 300.385 kb on + strand, within HMPREF1058_RS03355 at 300.386 kb on - strand, within HMPREF1058_RS03355
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan 5 mg/ml (C) remove 297,756 + HMPREF1058_RS03365 0.61 -0.9 297,757 - HMPREF1058_RS03365 0.61 +0.7 297,957 - HMPREF1058_RS03365 0.69 +0.7 297,989 - HMPREF1058_RS03365 0.71 -3.3 298,025 + HMPREF1058_RS03365 0.72 -0.7 298,026 - HMPREF1058_RS03365 0.72 +0.4 298,026 - HMPREF1058_RS03365 0.72 +0.8 298,029 + HMPREF1058_RS03365 0.72 -1.6 298,030 - HMPREF1058_RS03365 0.72 +0.5 298,031 + HMPREF1058_RS03365 0.72 +0.4 298,068 + HMPREF1058_RS03365 0.74 -1.2 298,088 - HMPREF1058_RS03365 0.75 +0.2 298,332 - HMPREF1058_RS03365 0.85 +0.5 298,395 + HMPREF1058_RS03365 0.87 +0.8 298,402 + HMPREF1058_RS03365 0.88 +3.0 298,412 + HMPREF1058_RS03365 0.88 -1.6 298,413 - HMPREF1058_RS03365 0.88 +1.4 298,539 + -0.9 298,540 - -1.0 298,592 - -0.1 298,699 - -1.3 298,778 + HMPREF1058_RS03360 0.12 +4.8 298,779 - HMPREF1058_RS03360 0.12 +2.6 298,789 + HMPREF1058_RS03360 0.13 -1.9 298,850 + HMPREF1058_RS03360 0.22 +0.1 298,895 + HMPREF1058_RS03360 0.28 -0.3 298,938 + HMPREF1058_RS03360 0.34 -0.5 299,072 + HMPREF1058_RS03360 0.53 +0.3 299,072 + HMPREF1058_RS03360 0.53 +0.3 299,072 + HMPREF1058_RS03360 0.53 +0.4 299,106 + HMPREF1058_RS03360 0.58 +0.5 299,130 - HMPREF1058_RS03360 0.61 +0.3 299,245 - HMPREF1058_RS03360 0.77 -1.0 299,257 - HMPREF1058_RS03360 0.79 +0.6 299,382 - +2.0 299,472 + -1.1 299,585 + HMPREF1058_RS03355 0.13 -0.5 299,585 + HMPREF1058_RS03355 0.13 +0.5 299,585 + HMPREF1058_RS03355 0.13 +0.2 299,585 + HMPREF1058_RS03355 0.13 +1.4 299,586 - HMPREF1058_RS03355 0.13 -0.8 299,586 - HMPREF1058_RS03355 0.13 -0.0 299,586 - HMPREF1058_RS03355 0.13 -0.7 299,959 - HMPREF1058_RS03355 0.43 +0.6 299,959 - HMPREF1058_RS03355 0.43 -0.3 300,026 - HMPREF1058_RS03355 0.49 +2.9 300,026 - HMPREF1058_RS03355 0.49 +0.2 300,028 - HMPREF1058_RS03355 0.49 +1.0 300,270 + HMPREF1058_RS03355 0.68 +1.1 300,274 + HMPREF1058_RS03355 0.68 -0.7 300,274 + HMPREF1058_RS03355 0.68 -0.2 300,385 + HMPREF1058_RS03355 0.77 -0.6 300,386 - HMPREF1058_RS03355 0.77 -1.8
Or see this region's nucleotide sequence