Experiment: (+)-Arabinogalactan 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01980 and HMPREF1058_RS01975 overlap by 29 nucleotides HMPREF1058_RS01975 and HMPREF1058_RS01970 are separated by 148 nucleotides HMPREF1058_RS01970 and HMPREF1058_RS21540 are separated by 42 nucleotides HMPREF1058_RS21540 and HMPREF1058_RS01965 are separated by 51 nucleotides HMPREF1058_RS01965 and HMPREF1058_RS01960 are separated by 12 nucleotides HMPREF1058_RS01960 and HMPREF1058_RS21170 are separated by 3 nucleotides HMPREF1058_RS21170 and HMPREF1058_RS01955 are separated by 105 nucleotides
HMPREF1058_RS01980: HMPREF1058_RS01980 - hypothetical protein, at 4,721 to 5,095
_RS01980
HMPREF1058_RS01975: HMPREF1058_RS01975 - hypothetical protein, at 5,067 to 5,333
_RS01975
HMPREF1058_RS01970: HMPREF1058_RS01970 - hypothetical protein, at 5,482 to 5,661
_RS01970
HMPREF1058_RS21540: HMPREF1058_RS21540 - hypothetical protein, at 5,704 to 5,856
_RS21540
HMPREF1058_RS01965: HMPREF1058_RS01965 - hypothetical protein, at 5,908 to 6,105
_RS01965
HMPREF1058_RS01960: HMPREF1058_RS01960 - hypothetical protein, at 6,118 to 6,405
_RS01960
HMPREF1058_RS21170: HMPREF1058_RS21170 - DUF3873 family protein, at 6,409 to 6,615
_RS21170
HMPREF1058_RS01955: HMPREF1058_RS01955 - hypothetical protein, at 6,721 to 7,173
_RS01955
Position (kb) 5
6
7 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4.927 kb on + strand, within HMPREF1058_RS01980 at 4.927 kb on + strand, within HMPREF1058_RS01980 at 4.959 kb on + strand, within HMPREF1058_RS01980 at 4.960 kb on - strand, within HMPREF1058_RS01980 at 4.988 kb on - strand, within HMPREF1058_RS01980 at 5.000 kb on - strand, within HMPREF1058_RS01980 at 5.097 kb on + strand, within HMPREF1058_RS01975 at 5.097 kb on + strand, within HMPREF1058_RS01975 at 5.098 kb on - strand, within HMPREF1058_RS01975 at 5.246 kb on - strand, within HMPREF1058_RS01975 at 5.246 kb on - strand, within HMPREF1058_RS01975 at 5.305 kb on - strand, within HMPREF1058_RS01975 at 5.305 kb on - strand, within HMPREF1058_RS01975 at 5.349 kb on - strand at 5.459 kb on + strand at 5.460 kb on - strand at 5.476 kb on - strand at 5.528 kb on + strand, within HMPREF1058_RS01970 at 5.529 kb on - strand, within HMPREF1058_RS01970 at 5.531 kb on + strand, within HMPREF1058_RS01970 at 5.573 kb on + strand, within HMPREF1058_RS01970 at 5.573 kb on + strand, within HMPREF1058_RS01970 at 5.596 kb on + strand, within HMPREF1058_RS01970 at 5.625 kb on + strand, within HMPREF1058_RS01970 at 5.695 kb on + strand at 5.696 kb on - strand at 5.696 kb on - strand at 5.898 kb on - strand at 5.898 kb on - strand at 6.109 kb on + strand at 6.179 kb on + strand, within HMPREF1058_RS01960 at 6.179 kb on + strand, within HMPREF1058_RS01960 at 6.180 kb on - strand, within HMPREF1058_RS01960 at 6.181 kb on + strand, within HMPREF1058_RS01960 at 6.181 kb on + strand, within HMPREF1058_RS01960 at 6.181 kb on + strand, within HMPREF1058_RS01960 at 6.306 kb on + strand, within HMPREF1058_RS01960 at 6.306 kb on + strand, within HMPREF1058_RS01960 at 6.307 kb on - strand, within HMPREF1058_RS01960 at 6.440 kb on + strand, within HMPREF1058_RS21170 at 6.463 kb on + strand, within HMPREF1058_RS21170 at 6.463 kb on + strand, within HMPREF1058_RS21170 at 6.463 kb on + strand, within HMPREF1058_RS21170 at 6.508 kb on + strand, within HMPREF1058_RS21170 at 6.562 kb on - strand, within HMPREF1058_RS21170 at 6.600 kb on + strand at 6.630 kb on - strand at 6.668 kb on - strand at 6.691 kb on + strand at 6.733 kb on + strand at 6.750 kb on - strand at 6.750 kb on - strand at 6.825 kb on + strand, within HMPREF1058_RS01955 at 6.825 kb on + strand, within HMPREF1058_RS01955 at 6.826 kb on - strand, within HMPREF1058_RS01955 at 6.924 kb on + strand, within HMPREF1058_RS01955 at 6.942 kb on - strand, within HMPREF1058_RS01955 at 6.949 kb on - strand, within HMPREF1058_RS01955 at 6.959 kb on - strand, within HMPREF1058_RS01955 at 6.963 kb on + strand, within HMPREF1058_RS01955
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan 5 mg/ml (C) remove 4,927 + HMPREF1058_RS01980 0.55 -1.0 4,927 + HMPREF1058_RS01980 0.55 -0.4 4,959 + HMPREF1058_RS01980 0.63 +1.4 4,960 - HMPREF1058_RS01980 0.64 +1.5 4,988 - HMPREF1058_RS01980 0.71 -1.7 5,000 - HMPREF1058_RS01980 0.74 +0.5 5,097 + HMPREF1058_RS01975 0.11 -0.3 5,097 + HMPREF1058_RS01975 0.11 +1.5 5,098 - HMPREF1058_RS01975 0.12 -0.8 5,246 - HMPREF1058_RS01975 0.67 +0.2 5,246 - HMPREF1058_RS01975 0.67 +1.5 5,305 - HMPREF1058_RS01975 0.89 +2.9 5,305 - HMPREF1058_RS01975 0.89 +0.3 5,349 - -1.4 5,459 + -3.1 5,460 - +0.1 5,476 - +0.8 5,528 + HMPREF1058_RS01970 0.26 -0.5 5,529 - HMPREF1058_RS01970 0.26 +1.9 5,531 + HMPREF1058_RS01970 0.27 -1.3 5,573 + HMPREF1058_RS01970 0.51 +0.6 5,573 + HMPREF1058_RS01970 0.51 +0.1 5,596 + HMPREF1058_RS01970 0.63 +0.2 5,625 + HMPREF1058_RS01970 0.79 -1.3 5,695 + -1.1 5,696 - -1.7 5,696 - -0.6 5,898 - -1.1 5,898 - +0.3 6,109 + -1.4 6,179 + HMPREF1058_RS01960 0.21 -1.3 6,179 + HMPREF1058_RS01960 0.21 -0.2 6,180 - HMPREF1058_RS01960 0.22 +0.1 6,181 + HMPREF1058_RS01960 0.22 -2.1 6,181 + HMPREF1058_RS01960 0.22 -1.2 6,181 + HMPREF1058_RS01960 0.22 -0.1 6,306 + HMPREF1058_RS01960 0.65 +0.0 6,306 + HMPREF1058_RS01960 0.65 -1.4 6,307 - HMPREF1058_RS01960 0.66 +0.1 6,440 + HMPREF1058_RS21170 0.15 -0.8 6,463 + HMPREF1058_RS21170 0.26 -0.7 6,463 + HMPREF1058_RS21170 0.26 +0.0 6,463 + HMPREF1058_RS21170 0.26 +1.5 6,508 + HMPREF1058_RS21170 0.48 -1.4 6,562 - HMPREF1058_RS21170 0.74 +0.2 6,600 + +0.1 6,630 - -1.0 6,668 - +0.1 6,691 + -1.2 6,733 + +1.1 6,750 - -1.0 6,750 - +1.5 6,825 + HMPREF1058_RS01955 0.23 +0.3 6,825 + HMPREF1058_RS01955 0.23 -0.5 6,826 - HMPREF1058_RS01955 0.23 -0.7 6,924 + HMPREF1058_RS01955 0.45 +1.5 6,942 - HMPREF1058_RS01955 0.49 +1.4 6,949 - HMPREF1058_RS01955 0.50 -0.8 6,959 - HMPREF1058_RS01955 0.53 -0.4 6,963 + HMPREF1058_RS01955 0.53 -0.7
Or see this region's nucleotide sequence