Experiment: (+)-Arabinogalactan 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01525 and HMPREF1058_RS01520 are separated by 31 nucleotides HMPREF1058_RS01520 and HMPREF1058_RS01515 are separated by 186 nucleotides
HMPREF1058_RS01525: HMPREF1058_RS01525 - helix-turn-helix transcriptional regulator, at 101,230 to 102,138
_RS01525
HMPREF1058_RS01520: HMPREF1058_RS01520 - helix-turn-helix transcriptional regulator, at 102,170 to 103,057
_RS01520
HMPREF1058_RS01515: HMPREF1058_RS01515 - 1-deoxy-D-xylulose-5-phosphate synthase, at 103,244 to 105,004
_RS01515
Position (kb) 102
103
104 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 101.214 kb on + strand at 101.240 kb on + strand at 101.268 kb on + strand at 101.269 kb on - strand at 101.348 kb on - strand, within HMPREF1058_RS01525 at 101.348 kb on - strand, within HMPREF1058_RS01525 at 101.413 kb on + strand, within HMPREF1058_RS01525 at 101.414 kb on - strand, within HMPREF1058_RS01525 at 101.643 kb on + strand, within HMPREF1058_RS01525 at 101.643 kb on + strand, within HMPREF1058_RS01525 at 101.643 kb on + strand, within HMPREF1058_RS01525 at 101.700 kb on + strand, within HMPREF1058_RS01525 at 101.701 kb on - strand, within HMPREF1058_RS01525 at 101.703 kb on + strand, within HMPREF1058_RS01525 at 101.722 kb on + strand, within HMPREF1058_RS01525 at 101.723 kb on - strand, within HMPREF1058_RS01525 at 101.723 kb on - strand, within HMPREF1058_RS01525 at 101.726 kb on + strand, within HMPREF1058_RS01525 at 101.727 kb on - strand, within HMPREF1058_RS01525 at 101.727 kb on - strand, within HMPREF1058_RS01525 at 101.759 kb on - strand, within HMPREF1058_RS01525 at 101.925 kb on + strand, within HMPREF1058_RS01525 at 101.963 kb on - strand, within HMPREF1058_RS01525 at 101.963 kb on - strand, within HMPREF1058_RS01525 at 101.964 kb on + strand, within HMPREF1058_RS01525 at 102.134 kb on + strand at 102.134 kb on + strand at 102.134 kb on + strand at 102.156 kb on + strand at 102.170 kb on - strand at 102.189 kb on + strand at 102.190 kb on - strand at 102.191 kb on + strand at 102.192 kb on - strand at 102.296 kb on + strand, within HMPREF1058_RS01520 at 102.296 kb on + strand, within HMPREF1058_RS01520 at 102.297 kb on - strand, within HMPREF1058_RS01520 at 102.356 kb on + strand, within HMPREF1058_RS01520 at 102.357 kb on - strand, within HMPREF1058_RS01520 at 102.357 kb on - strand, within HMPREF1058_RS01520 at 102.424 kb on + strand, within HMPREF1058_RS01520 at 102.509 kb on - strand, within HMPREF1058_RS01520 at 102.591 kb on + strand, within HMPREF1058_RS01520 at 102.592 kb on - strand, within HMPREF1058_RS01520 at 102.625 kb on + strand, within HMPREF1058_RS01520 at 102.626 kb on - strand, within HMPREF1058_RS01520 at 102.626 kb on - strand, within HMPREF1058_RS01520 at 102.631 kb on + strand, within HMPREF1058_RS01520 at 102.635 kb on - strand, within HMPREF1058_RS01520 at 102.652 kb on - strand, within HMPREF1058_RS01520 at 102.759 kb on - strand, within HMPREF1058_RS01520 at 102.760 kb on + strand, within HMPREF1058_RS01520 at 102.808 kb on + strand, within HMPREF1058_RS01520 at 103.129 kb on + strand at 103.134 kb on - strand at 103.247 kb on + strand at 103.248 kb on - strand at 103.303 kb on - strand at 103.401 kb on + strand at 103.412 kb on + strand at 103.443 kb on + strand, within HMPREF1058_RS01515 at 103.443 kb on + strand, within HMPREF1058_RS01515 at 103.444 kb on - strand, within HMPREF1058_RS01515 at 103.444 kb on - strand, within HMPREF1058_RS01515 at 103.445 kb on + strand, within HMPREF1058_RS01515 at 103.445 kb on + strand, within HMPREF1058_RS01515 at 103.446 kb on - strand, within HMPREF1058_RS01515 at 103.453 kb on - strand, within HMPREF1058_RS01515 at 103.466 kb on + strand, within HMPREF1058_RS01515 at 103.469 kb on - strand, within HMPREF1058_RS01515 at 103.521 kb on - strand, within HMPREF1058_RS01515 at 103.744 kb on + strand, within HMPREF1058_RS01515 at 103.745 kb on - strand, within HMPREF1058_RS01515 at 103.746 kb on + strand, within HMPREF1058_RS01515 at 103.747 kb on - strand, within HMPREF1058_RS01515 at 103.877 kb on + strand, within HMPREF1058_RS01515 at 103.878 kb on - strand, within HMPREF1058_RS01515 at 103.936 kb on + strand, within HMPREF1058_RS01515 at 103.936 kb on + strand, within HMPREF1058_RS01515 at 103.937 kb on - strand, within HMPREF1058_RS01515 at 103.937 kb on - strand, within HMPREF1058_RS01515
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan 5 mg/ml (C) remove 101,214 + +1.5 101,240 + +2.1 101,268 + +0.4 101,269 - -0.8 101,348 - HMPREF1058_RS01525 0.13 -0.4 101,348 - HMPREF1058_RS01525 0.13 -0.3 101,413 + HMPREF1058_RS01525 0.20 +0.5 101,414 - HMPREF1058_RS01525 0.20 +0.5 101,643 + HMPREF1058_RS01525 0.45 -0.3 101,643 + HMPREF1058_RS01525 0.45 -1.2 101,643 + HMPREF1058_RS01525 0.45 -0.1 101,700 + HMPREF1058_RS01525 0.52 -0.1 101,701 - HMPREF1058_RS01525 0.52 +0.1 101,703 + HMPREF1058_RS01525 0.52 +0.6 101,722 + HMPREF1058_RS01525 0.54 -0.2 101,723 - HMPREF1058_RS01525 0.54 +1.0 101,723 - HMPREF1058_RS01525 0.54 -1.2 101,726 + HMPREF1058_RS01525 0.55 +0.8 101,727 - HMPREF1058_RS01525 0.55 -0.4 101,727 - HMPREF1058_RS01525 0.55 -0.7 101,759 - HMPREF1058_RS01525 0.58 +0.5 101,925 + HMPREF1058_RS01525 0.76 -0.1 101,963 - HMPREF1058_RS01525 0.81 -0.1 101,963 - HMPREF1058_RS01525 0.81 -1.0 101,964 + HMPREF1058_RS01525 0.81 -0.8 102,134 + -0.1 102,134 + +0.3 102,134 + -1.5 102,156 + +0.2 102,170 - +0.3 102,189 + -0.2 102,190 - +0.1 102,191 + +2.3 102,192 - -0.5 102,296 + HMPREF1058_RS01520 0.14 +0.1 102,296 + HMPREF1058_RS01520 0.14 +0.5 102,297 - HMPREF1058_RS01520 0.14 -0.1 102,356 + HMPREF1058_RS01520 0.21 -1.2 102,357 - HMPREF1058_RS01520 0.21 -1.3 102,357 - HMPREF1058_RS01520 0.21 -1.1 102,424 + HMPREF1058_RS01520 0.29 +0.9 102,509 - HMPREF1058_RS01520 0.38 -0.5 102,591 + HMPREF1058_RS01520 0.47 -0.4 102,592 - HMPREF1058_RS01520 0.48 -0.1 102,625 + HMPREF1058_RS01520 0.51 +0.9 102,626 - HMPREF1058_RS01520 0.51 -1.1 102,626 - HMPREF1058_RS01520 0.51 +2.1 102,631 + HMPREF1058_RS01520 0.52 +0.2 102,635 - HMPREF1058_RS01520 0.52 -1.1 102,652 - HMPREF1058_RS01520 0.54 +1.0 102,759 - HMPREF1058_RS01520 0.66 -0.7 102,760 + HMPREF1058_RS01520 0.66 +1.2 102,808 + HMPREF1058_RS01520 0.72 -1.8 103,129 + +0.0 103,134 - -0.1 103,247 + -1.6 103,248 - +3.0 103,303 - +0.7 103,401 + -1.4 103,412 + -1.4 103,443 + HMPREF1058_RS01515 0.11 -0.2 103,443 + HMPREF1058_RS01515 0.11 -0.5 103,444 - HMPREF1058_RS01515 0.11 +1.9 103,444 - HMPREF1058_RS01515 0.11 +2.3 103,445 + HMPREF1058_RS01515 0.11 -1.0 103,445 + HMPREF1058_RS01515 0.11 +1.1 103,446 - HMPREF1058_RS01515 0.11 +1.5 103,453 - HMPREF1058_RS01515 0.12 +0.4 103,466 + HMPREF1058_RS01515 0.13 +2.1 103,469 - HMPREF1058_RS01515 0.13 -0.2 103,521 - HMPREF1058_RS01515 0.16 -0.8 103,744 + HMPREF1058_RS01515 0.28 +0.4 103,745 - HMPREF1058_RS01515 0.28 +0.7 103,746 + HMPREF1058_RS01515 0.29 -0.8 103,747 - HMPREF1058_RS01515 0.29 -0.7 103,877 + HMPREF1058_RS01515 0.36 -1.0 103,878 - HMPREF1058_RS01515 0.36 +0.2 103,936 + HMPREF1058_RS01515 0.39 +1.1 103,936 + HMPREF1058_RS01515 0.39 +6.2 103,937 - HMPREF1058_RS01515 0.39 +0.2 103,937 - HMPREF1058_RS01515 0.39 -1.1
Or see this region's nucleotide sequence