Experiment: (+)-Arabinogalactan 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17570 and HMPREF1058_RS17565 are separated by 444 nucleotides HMPREF1058_RS17565 and HMPREF1058_RS0119335 are separated by 116 nucleotides HMPREF1058_RS0119335 and HMPREF1058_RS17560 are separated by 19 nucleotides
HMPREF1058_RS17570: HMPREF1058_RS17570 - RteC domain-containing protein, at 394,229 to 395,089
_RS17570
HMPREF1058_RS17565: HMPREF1058_RS17565 - tyrosine-type recombinase/integrase, at 395,534 to 395,881
_RS17565
HMPREF1058_RS0119335: HMPREF1058_RS0119335 - site-specific integrase, at 395,998 to 397,231
_RS0119335
HMPREF1058_RS17560: HMPREF1058_RS17560 - phage integrase SAM-like domain-containing protein, at 397,251 to 398,306
_RS17560
Position (kb) 395
396
397
398 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 395.050 kb on - strand at 395.142 kb on + strand at 395.192 kb on + strand at 395.473 kb on + strand at 395.473 kb on + strand at 395.474 kb on - strand at 395.549 kb on + strand at 395.549 kb on + strand at 395.550 kb on - strand at 395.565 kb on - strand at 395.666 kb on + strand, within HMPREF1058_RS17565 at 395.716 kb on - strand, within HMPREF1058_RS17565 at 395.808 kb on - strand, within HMPREF1058_RS17565 at 396.406 kb on + strand, within HMPREF1058_RS0119335 at 396.407 kb on - strand, within HMPREF1058_RS0119335 at 396.600 kb on - strand, within HMPREF1058_RS0119335 at 397.132 kb on - strand at 397.146 kb on + strand at 397.149 kb on - strand at 397.222 kb on + strand at 397.374 kb on + strand, within HMPREF1058_RS17560 at 397.558 kb on - strand, within HMPREF1058_RS17560 at 397.818 kb on + strand, within HMPREF1058_RS17560 at 397.818 kb on + strand, within HMPREF1058_RS17560 at 397.818 kb on + strand, within HMPREF1058_RS17560 at 397.840 kb on + strand, within HMPREF1058_RS17560 at 397.841 kb on - strand, within HMPREF1058_RS17560 at 397.844 kb on - strand, within HMPREF1058_RS17560 at 397.872 kb on + strand, within HMPREF1058_RS17560 at 397.893 kb on - strand, within HMPREF1058_RS17560 at 398.065 kb on + strand, within HMPREF1058_RS17560
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan 5 mg/ml (C) remove 395,050 - +4.7 395,142 + -1.6 395,192 + -0.1 395,473 + -2.1 395,473 + -1.2 395,474 - +4.7 395,549 + -0.1 395,549 + +4.5 395,550 - +0.9 395,565 - +5.5 395,666 + HMPREF1058_RS17565 0.38 +0.3 395,716 - HMPREF1058_RS17565 0.52 -0.5 395,808 - HMPREF1058_RS17565 0.79 +1.4 396,406 + HMPREF1058_RS0119335 0.33 -1.6 396,407 - HMPREF1058_RS0119335 0.33 -2.3 396,600 - HMPREF1058_RS0119335 0.49 -0.5 397,132 - -0.8 397,146 + +0.7 397,149 - +0.3 397,222 + -2.1 397,374 + HMPREF1058_RS17560 0.12 -1.5 397,558 - HMPREF1058_RS17560 0.29 -1.3 397,818 + HMPREF1058_RS17560 0.54 -0.6 397,818 + HMPREF1058_RS17560 0.54 +0.2 397,818 + HMPREF1058_RS17560 0.54 +0.2 397,840 + HMPREF1058_RS17560 0.56 -0.8 397,841 - HMPREF1058_RS17560 0.56 +0.7 397,844 - HMPREF1058_RS17560 0.56 +0.9 397,872 + HMPREF1058_RS17560 0.59 -1.6 397,893 - HMPREF1058_RS17560 0.61 +4.5 398,065 + HMPREF1058_RS17560 0.77 -0.6
Or see this region's nucleotide sequence