Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS00745

Experiment: (+)-Arabinogalactan 5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	(+)-Arabinogalactan 5 mg/ml (C)
2,440	+				-1.2
2,441	-				-1.8
2,441	-				-0.6
2,445	+				+0.2
2,449	+				-0.1
2,449	+				+0.6
2,450	-				-0.6
2,500	-				+0.5
2,502	-				-1.5
2,576	+				-1.4
2,577	-				-0.7
2,584	+				+0.1
2,585	-				+1.1
2,590	+				-1.8
2,590	+				-0.4
2,591	-				-0.5
2,591	-				-0.0
2,596	+				-0.1
2,597	-				+0.6
2,598	+				-1.3
2,599	-				-0.9
2,663	+				+0.6
2,668	-		HMPREF1058_RS00750	0.10	+0.2
2,672	+		HMPREF1058_RS00750	0.11	-1.7
2,700	+		HMPREF1058_RS00750	0.15	-0.7
2,700	+		HMPREF1058_RS00750	0.15	+0.7
2,700	+		HMPREF1058_RS00750	0.15	-1.0
2,701	-		HMPREF1058_RS00750	0.16	-0.1
2,701	-		HMPREF1058_RS00750	0.16	+1.0
2,701	-		HMPREF1058_RS00750	0.16	+2.3
2,706	+		HMPREF1058_RS00750	0.16	+0.1
2,706	+		HMPREF1058_RS00750	0.16	-0.2
2,707	-		HMPREF1058_RS00750	0.17	-0.9
2,707	-		HMPREF1058_RS00750	0.17	+0.4
2,707	-		HMPREF1058_RS00750	0.17	+0.1
2,760	+		HMPREF1058_RS00750	0.25	-0.5
2,805	+		HMPREF1058_RS00750	0.33	+0.3
2,811	-		HMPREF1058_RS00750	0.34	-1.0
2,879	+		HMPREF1058_RS00750	0.45	+0.6
2,884	-		HMPREF1058_RS00750	0.46	+0.7
3,018	+		HMPREF1058_RS00750	0.68	-0.9
3,019	-		HMPREF1058_RS00750	0.68	-0.2
3,020	+		HMPREF1058_RS00750	0.68	-1.5
3,020	+		HMPREF1058_RS00750	0.68	-1.9
3,020	+		HMPREF1058_RS00750	0.68	-0.8
3,020	+		HMPREF1058_RS00750	0.68	+0.4
3,020	+		HMPREF1058_RS00750	0.68	+0.1
3,021	-		HMPREF1058_RS00750	0.68	-0.2
3,026	+		HMPREF1058_RS00750	0.69	-0.2
3,026	+		HMPREF1058_RS00750	0.69	+0.1
3,039	+		HMPREF1058_RS00750	0.71	+0.4
3,051	+		HMPREF1058_RS00750	0.73	+0.4
3,062	+		HMPREF1058_RS00750	0.75	-0.7
3,062	+		HMPREF1058_RS00750	0.75	-1.8
3,062	+		HMPREF1058_RS00750	0.75	+0.9
3,062	+		HMPREF1058_RS00750	0.75	+0.2
3,062	+		HMPREF1058_RS00750	0.75	-1.1
3,063	-		HMPREF1058_RS00750	0.75	+0.2
3,064	+		HMPREF1058_RS00750	0.75	-0.4
3,116	+		HMPREF1058_RS00750	0.84	-0.3
3,116	+		HMPREF1058_RS00750	0.84	+0.5
3,168	+				+0.1
3,168	+				+1.1
3,169	-				+0.1
3,173	+				+1.1
3,186	+				-0.4
3,270	+				+0.0
3,270	+				+0.6
3,283	-				+0.2
3,284	+				-1.1
3,284	+				+2.2
3,317	-				-1.2
3,373	+				+0.6
3,374	-				-0.9
3,374	-				+0.5
3,374	-				-1.3
3,374	-				+1.9
3,380	-				-0.6
3,407	+				+6.2
3,408	-				-0.4
3,408	-				-0.1
3,408	-				+0.0
3,408	-				+5.6
3,409	+				-1.9
3,409	+				+0.9
3,410	-				-0.4
3,412	-				+0.1
3,418	-				+0.6
3,422	+				-1.9
3,423	-				-0.6
3,424	+				+0.1
3,424	+				+0.5
3,425	-				-0.4
3,426	+				+0.3
3,465	-				+0.2
3,511	-		HMPREF1058_RS00745	0.18	+0.2
3,577	+		HMPREF1058_RS00745	0.30	-0.1
3,577	+		HMPREF1058_RS00745	0.30	-1.9
3,665	+		HMPREF1058_RS00745	0.46	+0.0
3,666	-		HMPREF1058_RS00745	0.47	+0.5
3,715	+		HMPREF1058_RS00745	0.56	-0.1
3,740	-		HMPREF1058_RS00745	0.60	-0.2
3,743	-		HMPREF1058_RS00745	0.61	+0.4
3,745	-		HMPREF1058_RS00745	0.61	+1.0
3,745	-		HMPREF1058_RS00745	0.61	-0.3
3,785	+		HMPREF1058_RS00745	0.69	+1.3
3,786	-		HMPREF1058_RS00745	0.69	-0.2
3,824	-		HMPREF1058_RS00745	0.76	+0.6
3,866	+		HMPREF1058_RS00745	0.84	-0.1
3,884	+		HMPREF1058_RS00745	0.87	+0.6
3,888	+		HMPREF1058_RS00745	0.88	-0.3
3,888	+		HMPREF1058_RS00745	0.88	+0.4
3,888	+		HMPREF1058_RS00745	0.88	-2.9
3,888	+		HMPREF1058_RS00745	0.88	-0.6
3,889	-		HMPREF1058_RS00745	0.88	+0.6
3,889	-		HMPREF1058_RS00745	0.88	-0.8
3,889	-		HMPREF1058_RS00745	0.88	+1.4
3,923	+				-0.8
3,924	-				-0.6
3,924	-				+0.6
3,986	+				+0.1
3,990	-				+0.5
4,118	+				-0.5
4,129	+				-0.4
4,130	-				+2.9
4,136	+				-2.4
4,162	+				-0.4
4,169	-				-0.7
4,239	-		HMPREF1058_RS00740	0.43	+1.4
4,239	-		HMPREF1058_RS00740	0.43	-0.9
4,241	-		HMPREF1058_RS00740	0.44	+0.4
4,242	+		HMPREF1058_RS00740	0.44	-0.3
4,242	+		HMPREF1058_RS00740	0.44	+0.0
4,243	-		HMPREF1058_RS00740	0.45	-1.7
4,274	-		HMPREF1058_RS00740	0.61	-0.8
4,274	-		HMPREF1058_RS00740	0.61	-0.0
4,313	+		HMPREF1058_RS00740	0.81	-0.6
4,314	-		HMPREF1058_RS00740	0.82	-0.1
4,368	-				-0.7
4,391	-				-1.2
4,594	+		HMPREF1058_RS00735	0.39	+0.4
4,595	-		HMPREF1058_RS00735	0.39	+0.3
4,602	+		HMPREF1058_RS00735	0.40	-1.0
4,603	-		HMPREF1058_RS00735	0.40	-0.7
4,603	-		HMPREF1058_RS00735	0.40	+0.5
4,607	-		HMPREF1058_RS00735	0.41	-0.8
4,622	-		HMPREF1058_RS00735	0.43	-0.6
4,640	+		HMPREF1058_RS00735	0.46	+0.2
4,640	+		HMPREF1058_RS00735	0.46	-0.4
4,676	+		HMPREF1058_RS00735	0.52	-1.1
4,677	-		HMPREF1058_RS00735	0.52	-0.1
4,680	-		HMPREF1058_RS00735	0.53	+0.3
4,705	+		HMPREF1058_RS00735	0.57	-0.6
4,725	-		HMPREF1058_RS00735	0.60	-0.3
4,725	-		HMPREF1058_RS00735	0.60	+0.7
4,725	-		HMPREF1058_RS00735	0.60	+0.2
4,811	+		HMPREF1058_RS00735	0.74	-1.6
4,812	-		HMPREF1058_RS00735	0.74	-0.3
4,812	-		HMPREF1058_RS00735	0.74	+1.1
4,814	-		HMPREF1058_RS00735	0.74	+0.1
4,940	+				+0.5
4,941	-				+0.6
4,941	-				-0.1