Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0888

Experiment: Cholin acetate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0886 and Ga0059261_0887 are separated by 66 nucleotidesGa0059261_0887 and Ga0059261_0888 overlap by 4 nucleotidesGa0059261_0888 and Ga0059261_0889 are separated by 350 nucleotidesGa0059261_0889 and Ga0059261_0890 are separated by 64 nucleotidesGa0059261_0890 and Ga0059261_0891 are separated by 19 nucleotides Ga0059261_0886: Ga0059261_0886 - Arabinose efflux permease, at 927,273 to 928,454 _0886 Ga0059261_0887: Ga0059261_0887 - Predicted transcriptional regulators, at 928,521 to 928,853 _0887 Ga0059261_0888: Ga0059261_0888 - Uncharacterized conserved protein, at 928,850 to 929,320 _0888 Ga0059261_0889: Ga0059261_0889 - Cold shock proteins, at 929,671 to 929,877 _0889 Ga0059261_0890: Ga0059261_0890 - hypothetical protein, at 929,942 to 930,160 _0890 Ga0059261_0891: Ga0059261_0891 - hypothetical protein, at 930,180 to 930,518 _0891 Position (kb) 928 929 930Strain fitness (log2 ratio) -2 -1 0 1 2at 927.939 kb on + strand, within Ga0059261_0886at 927.939 kb on + strand, within Ga0059261_0886at 927.939 kb on + strand, within Ga0059261_0886at 927.939 kb on + strand, within Ga0059261_0886at 927.939 kb on + strand, within Ga0059261_0886at 927.940 kb on - strand, within Ga0059261_0886at 927.940 kb on - strand, within Ga0059261_0886at 927.940 kb on - strand, within Ga0059261_0886at 927.940 kb on - strand, within Ga0059261_0886at 928.008 kb on + strand, within Ga0059261_0886at 928.008 kb on + strand, within Ga0059261_0886at 928.008 kb on + strand, within Ga0059261_0886at 928.008 kb on + strand, within Ga0059261_0886at 928.008 kb on + strand, within Ga0059261_0886at 928.009 kb on - strand, within Ga0059261_0886at 928.009 kb on - strand, within Ga0059261_0886at 928.009 kb on - strand, within Ga0059261_0886at 928.009 kb on - strand, within Ga0059261_0886at 928.009 kb on - strand, within Ga0059261_0886at 928.009 kb on - strand, within Ga0059261_0886at 928.015 kb on + strand, within Ga0059261_0886at 928.016 kb on - strand, within Ga0059261_0886at 928.016 kb on - strand, within Ga0059261_0886at 928.016 kb on - strand, within Ga0059261_0886at 928.335 kb on + strand, within Ga0059261_0886at 928.544 kb on + strandat 928.638 kb on + strand, within Ga0059261_0887at 928.638 kb on + strand, within Ga0059261_0887at 928.638 kb on + strand, within Ga0059261_0887at 928.638 kb on + strand, within Ga0059261_0887at 928.639 kb on - strand, within Ga0059261_0887at 928.639 kb on - strand, within Ga0059261_0887at 928.639 kb on - strand, within Ga0059261_0887at 928.639 kb on - strand, within Ga0059261_0887at 928.859 kb on - strandat 928.910 kb on + strandat 928.910 kb on + strand, within Ga0059261_0888at 928.910 kb on + strand, within Ga0059261_0888at 928.911 kb on - strand, within Ga0059261_0888at 928.911 kb on - strand, within Ga0059261_0888at 928.911 kb on - strand, within Ga0059261_0888at 928.911 kb on - strand, within Ga0059261_0888at 929.006 kb on + strand, within Ga0059261_0888at 929.006 kb on + strand, within Ga0059261_0888at 929.006 kb on + strand, within Ga0059261_0888at 929.006 kb on + strand, within Ga0059261_0888at 929.007 kb on - strand, within Ga0059261_0888at 929.054 kb on + strand, within Ga0059261_0888at 929.054 kb on + strand, within Ga0059261_0888at 929.055 kb on - strand, within Ga0059261_0888at 929.090 kb on + strand, within Ga0059261_0888at 929.090 kb on + strand, within Ga0059261_0888at 929.090 kb on + strand, within Ga0059261_0888at 929.091 kb on - strand, within Ga0059261_0888at 929.091 kb on - strand, within Ga0059261_0888at 929.091 kb on - strand, within Ga0059261_0888at 929.091 kb on - strand, within Ga0059261_0888at 929.091 kb on - strand, within Ga0059261_0888at 929.091 kb on - strand, within Ga0059261_0888at 929.123 kb on + strand, within Ga0059261_0888at 929.123 kb on + strand, within Ga0059261_0888at 929.123 kb on + strand, within Ga0059261_0888at 929.123 kb on + strand, within Ga0059261_0888at 929.124 kb on - strand, within Ga0059261_0888at 929.124 kb on - strand, within Ga0059261_0888at 929.124 kb on - strand, within Ga0059261_0888at 929.124 kb on - strand, within Ga0059261_0888at 929.124 kb on - strand, within Ga0059261_0888at 929.124 kb on - strand, within Ga0059261_0888at 929.124 kb on - strand, within Ga0059261_0888at 929.124 kb on - strand, within Ga0059261_0888at 929.124 kb on - strand, within Ga0059261_0888at 929.124 kb on - strand, within Ga0059261_0888at 929.124 kb on - strand, within Ga0059261_0888at 929.124 kb on - strand, within Ga0059261_0888at 929.130 kb on - strand, within Ga0059261_0888at 929.234 kb on + strand, within Ga0059261_0888at 929.234 kb on + strand, within Ga0059261_0888at 929.234 kb on + strand, within Ga0059261_0888at 929.234 kb on + strand, within Ga0059261_0888at 929.235 kb on - strand, within Ga0059261_0888at 929.235 kb on - strand, within Ga0059261_0888at 929.235 kb on - strand, within Ga0059261_0888at 929.235 kb on - strand, within Ga0059261_0888at 929.235 kb on - strand, within Ga0059261_0888at 929.366 kb on - strandat 929.494 kb on - strandat 929.537 kb on - strandat 929.538 kb on + strandat 929.670 kb on + strandat 929.819 kb on - strand, within Ga0059261_0889at 929.819 kb on - strandat 929.819 kb on - strand, within Ga0059261_0889at 929.819 kb on - strand, within Ga0059261_0889at 929.959 kb on + strandat 929.959 kb on + strandat 929.959 kb on + strandat 929.960 kb on - strandat 929.960 kb on - strandat 930.076 kb on + strand, within Ga0059261_0890at 930.076 kb on + strand, within Ga0059261_0890at 930.076 kb on + strand, within Ga0059261_0890at 930.098 kb on + strand, within Ga0059261_0890at 930.098 kb on + strand, within Ga0059261_0890at 930.099 kb on - strand, within Ga0059261_0890at 930.106 kb on + strand, within Ga0059261_0890at 930.106 kb on + strand, within Ga0059261_0890at 930.106 kb on + strand, within Ga0059261_0890at 930.106 kb on + strand, within Ga0059261_0890at 930.106 kb on + strand, within Ga0059261_0890at 930.106 kb on + strand, within Ga0059261_0890at 930.107 kb on - strand, within Ga0059261_0890at 930.107 kb on - strand, within Ga0059261_0890at 930.107 kb on - strand, within Ga0059261_0890at 930.107 kb on - strand, within Ga0059261_0890at 930.158 kb on + strandat 930.159 kb on - strandat 930.159 kb on - strandat 930.189 kb on + strandat 930.190 kb on - strandat 930.318 kb on - strand, within Ga0059261_0891

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholin acetate 10 mM
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927,939 + Ga0059261_0886 0.56 -0.3
927,939 + Ga0059261_0886 0.56 +0.6
927,939 + Ga0059261_0886 0.56 +0.4
927,939 + Ga0059261_0886 0.56 +1.0
927,939 + Ga0059261_0886 0.56 -0.1
927,940 - Ga0059261_0886 0.56 -0.7
927,940 - Ga0059261_0886 0.56 -1.6
927,940 - Ga0059261_0886 0.56 +0.3
927,940 - Ga0059261_0886 0.56 -0.2
928,008 + Ga0059261_0886 0.62 +1.0
928,008 + Ga0059261_0886 0.62 +1.0
928,008 + Ga0059261_0886 0.62 -0.1
928,008 + Ga0059261_0886 0.62 +0.1
928,008 + Ga0059261_0886 0.62 -0.2
928,009 - Ga0059261_0886 0.62 -0.5
928,009 - Ga0059261_0886 0.62 -0.4
928,009 - Ga0059261_0886 0.62 -0.6
928,009 - Ga0059261_0886 0.62 -0.2
928,009 - Ga0059261_0886 0.62 +0.3
928,009 - Ga0059261_0886 0.62 +0.8
928,015 + Ga0059261_0886 0.63 -0.6
928,016 - Ga0059261_0886 0.63 -0.0
928,016 - Ga0059261_0886 0.63 -0.3
928,016 - Ga0059261_0886 0.63 -0.4
928,335 + Ga0059261_0886 0.90 -0.6
928,544 + +0.1
928,638 + Ga0059261_0887 0.35 +0.5
928,638 + Ga0059261_0887 0.35 -0.3
928,638 + Ga0059261_0887 0.35 -0.1
928,638 + Ga0059261_0887 0.35 -0.6
928,639 - Ga0059261_0887 0.35 +1.0
928,639 - Ga0059261_0887 0.35 +0.7
928,639 - Ga0059261_0887 0.35 -0.2
928,639 - Ga0059261_0887 0.35 +0.2
928,859 - +0.6
928,910 + +1.0
928,910 + Ga0059261_0888 0.13 -0.2
928,910 + Ga0059261_0888 0.13 -2.0
928,911 - Ga0059261_0888 0.13 +0.2
928,911 - Ga0059261_0888 0.13 -1.6
928,911 - Ga0059261_0888 0.13 -0.7
928,911 - Ga0059261_0888 0.13 +0.7
929,006 + Ga0059261_0888 0.33 +0.2
929,006 + Ga0059261_0888 0.33 -0.3
929,006 + Ga0059261_0888 0.33 -0.6
929,006 + Ga0059261_0888 0.33 +0.2
929,007 - Ga0059261_0888 0.33 -0.2
929,054 + Ga0059261_0888 0.43 +0.4
929,054 + Ga0059261_0888 0.43 -0.6
929,055 - Ga0059261_0888 0.44 +0.2
929,090 + Ga0059261_0888 0.51 -0.6
929,090 + Ga0059261_0888 0.51 -0.0
929,090 + Ga0059261_0888 0.51 -0.4
929,091 - Ga0059261_0888 0.51 -0.1
929,091 - Ga0059261_0888 0.51 -0.3
929,091 - Ga0059261_0888 0.51 -1.3
929,091 - Ga0059261_0888 0.51 -0.0
929,091 - Ga0059261_0888 0.51 -0.6
929,091 - Ga0059261_0888 0.51 -0.5
929,123 + Ga0059261_0888 0.58 -0.6
929,123 + Ga0059261_0888 0.58 +0.3
929,123 + Ga0059261_0888 0.58 -1.0
929,123 + Ga0059261_0888 0.58 -0.7
929,124 - Ga0059261_0888 0.58 +0.3
929,124 - Ga0059261_0888 0.58 +1.0
929,124 - Ga0059261_0888 0.58 -0.2
929,124 - Ga0059261_0888 0.58 -0.0
929,124 - Ga0059261_0888 0.58 -2.4
929,124 - Ga0059261_0888 0.58 +0.1
929,124 - Ga0059261_0888 0.58 -0.8
929,124 - Ga0059261_0888 0.58 +0.8
929,124 - Ga0059261_0888 0.58 -1.4
929,124 - Ga0059261_0888 0.58 -0.3
929,124 - Ga0059261_0888 0.58 +0.7
929,124 - Ga0059261_0888 0.58 -0.5
929,130 - Ga0059261_0888 0.59 +0.3
929,234 + Ga0059261_0888 0.82 +0.3
929,234 + Ga0059261_0888 0.82 +0.3
929,234 + Ga0059261_0888 0.82 -0.1
929,234 + Ga0059261_0888 0.82 +0.0
929,235 - Ga0059261_0888 0.82 -1.6
929,235 - Ga0059261_0888 0.82 -0.8
929,235 - Ga0059261_0888 0.82 -0.2
929,235 - Ga0059261_0888 0.82 +0.1
929,235 - Ga0059261_0888 0.82 -0.9
929,366 - -0.1
929,494 - +0.6
929,537 - -0.5
929,538 + -0.8
929,670 + -1.2
929,819 - Ga0059261_0889 0.71 +0.4
929,819 - +2.5
929,819 - Ga0059261_0889 0.71 +1.7
929,819 - Ga0059261_0889 0.71 +0.4
929,959 + -0.8
929,959 + +0.1
929,959 + +0.5
929,960 - -0.6
929,960 - -0.0
930,076 + Ga0059261_0890 0.61 +1.2
930,076 + Ga0059261_0890 0.61 -0.7
930,076 + Ga0059261_0890 0.61 -0.3
930,098 + Ga0059261_0890 0.71 +0.7
930,098 + Ga0059261_0890 0.71 +0.9
930,099 - Ga0059261_0890 0.72 +1.0
930,106 + Ga0059261_0890 0.75 +0.4
930,106 + Ga0059261_0890 0.75 -0.9
930,106 + Ga0059261_0890 0.75 -0.6
930,106 + Ga0059261_0890 0.75 +0.0
930,106 + Ga0059261_0890 0.75 +0.8
930,106 + Ga0059261_0890 0.75 -0.7
930,107 - Ga0059261_0890 0.75 +0.2
930,107 - Ga0059261_0890 0.75 +0.0
930,107 - Ga0059261_0890 0.75 +0.0
930,107 - Ga0059261_0890 0.75 +0.4
930,158 + -1.0
930,159 - +0.2
930,159 - +0.5
930,189 + -0.1
930,190 - +1.1
930,318 - Ga0059261_0891 0.41 +0.3

Or see this region's nucleotide sequence