Experiment: D-Salicin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01651 and CCNA_01652 are separated by 26 nucleotides CCNA_01652 and CCNA_01653 are separated by 157 nucleotides CCNA_01653 and CCNA_01654 overlap by 4 nucleotides CCNA_01654 and CCNA_01655 are separated by 91 nucleotides
CCNA_01651: CCNA_01651 - DNA gyrase subunit A, at 1,771,304 to 1,774,063
_01651
CCNA_01652: CCNA_01652 - phosphopantetheine adenylyltransferase, at 1,774,090 to 1,774,581
_01652
CCNA_01653: CCNA_01653 - cyclophilin-type peptidylprolyl cis-trans isomerase, at 1,774,739 to 1,775,572
_01653
CCNA_01654: CCNA_01654 - cyclophilin-type peptidylprolyl cis-trans isomerase, at 1,775,569 to 1,776,417
_01654
CCNA_01655: CCNA_01655 - cyclophilin-type peptidylprolyl cis-trans isomerase, at 1,776,509 to 1,776,976
_01655
Position (kb)
1774
1775
1776 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1774.039 kb on - strand at 1774.076 kb on + strand at 1774.576 kb on + strand at 1774.584 kb on - strand at 1774.720 kb on + strand at 1774.720 kb on + strand at 1774.730 kb on + strand at 1774.747 kb on + strand at 1774.791 kb on + strand at 1774.799 kb on - strand at 1774.799 kb on - strand at 1774.808 kb on + strand at 1774.811 kb on - strand at 1774.833 kb on + strand, within CCNA_01653 at 1774.838 kb on + strand, within CCNA_01653 at 1774.841 kb on - strand, within CCNA_01653 at 1774.841 kb on - strand, within CCNA_01653 at 1774.856 kb on - strand, within CCNA_01653 at 1774.896 kb on + strand, within CCNA_01653 at 1774.899 kb on - strand, within CCNA_01653 at 1774.915 kb on - strand, within CCNA_01653 at 1774.918 kb on + strand, within CCNA_01653 at 1774.969 kb on - strand, within CCNA_01653 at 1774.997 kb on + strand, within CCNA_01653 at 1775.027 kb on - strand, within CCNA_01653 at 1775.103 kb on + strand, within CCNA_01653 at 1775.134 kb on + strand, within CCNA_01653 at 1775.164 kb on - strand, within CCNA_01653 at 1775.198 kb on - strand, within CCNA_01653 at 1775.248 kb on - strand, within CCNA_01653 at 1775.260 kb on - strand, within CCNA_01653 at 1775.275 kb on + strand, within CCNA_01653 at 1775.314 kb on + strand, within CCNA_01653 at 1775.322 kb on - strand, within CCNA_01653 at 1775.322 kb on - strand, within CCNA_01653 at 1775.324 kb on + strand, within CCNA_01653 at 1775.324 kb on + strand, within CCNA_01653 at 1775.324 kb on + strand, within CCNA_01653 at 1775.332 kb on - strand, within CCNA_01653 at 1775.332 kb on - strand, within CCNA_01653 at 1775.332 kb on - strand, within CCNA_01653 at 1775.351 kb on + strand, within CCNA_01653 at 1775.354 kb on - strand, within CCNA_01653 at 1775.364 kb on - strand, within CCNA_01653 at 1775.506 kb on + strand at 1775.563 kb on + strand at 1775.590 kb on + strand at 1775.598 kb on - strand at 1775.608 kb on - strand at 1775.638 kb on + strand at 1775.656 kb on - strand, within CCNA_01654 at 1775.815 kb on - strand, within CCNA_01654 at 1775.817 kb on + strand, within CCNA_01654 at 1775.842 kb on + strand, within CCNA_01654 at 1775.850 kb on - strand, within CCNA_01654 at 1775.869 kb on + strand, within CCNA_01654 at 1775.888 kb on + strand, within CCNA_01654 at 1775.896 kb on - strand, within CCNA_01654 at 1775.944 kb on - strand, within CCNA_01654 at 1775.944 kb on - strand, within CCNA_01654 at 1775.978 kb on + strand, within CCNA_01654 at 1776.067 kb on - strand, within CCNA_01654 at 1776.068 kb on - strand, within CCNA_01654 at 1776.138 kb on + strand, within CCNA_01654 at 1776.138 kb on + strand, within CCNA_01654 at 1776.138 kb on + strand, within CCNA_01654 at 1776.159 kb on + strand, within CCNA_01654 at 1776.194 kb on + strand, within CCNA_01654 at 1776.293 kb on + strand, within CCNA_01654 at 1776.294 kb on + strand, within CCNA_01654 at 1776.302 kb on - strand, within CCNA_01654 at 1776.382 kb on + strand at 1776.457 kb on + strand at 1776.465 kb on - strand at 1776.507 kb on - strand at 1776.564 kb on + strand, within CCNA_01655 at 1776.572 kb on - strand, within CCNA_01655
Per-strain Table
Position Strand Gene LocusTag Fraction D-Salicin (C) remove 1,774,039 - -0.2 1,774,076 + +2.7 1,774,576 + +1.3 1,774,584 - +1.2 1,774,720 + +2.8 1,774,720 + +1.8 1,774,730 + +2.2 1,774,747 + +1.3 1,774,791 + +1.0 1,774,799 - -2.1 1,774,799 - -1.1 1,774,808 + +2.4 1,774,811 - -1.3 1,774,833 + CCNA_01653 0.11 +0.9 1,774,838 + CCNA_01653 0.12 +2.8 1,774,841 - CCNA_01653 0.12 -0.6 1,774,841 - CCNA_01653 0.12 -0.8 1,774,856 - CCNA_01653 0.14 -0.2 1,774,896 + CCNA_01653 0.19 +2.1 1,774,899 - CCNA_01653 0.19 +0.9 1,774,915 - CCNA_01653 0.21 -0.9 1,774,918 + CCNA_01653 0.21 -0.1 1,774,969 - CCNA_01653 0.28 -1.2 1,774,997 + CCNA_01653 0.31 +2.4 1,775,027 - CCNA_01653 0.35 +0.2 1,775,103 + CCNA_01653 0.44 +3.2 1,775,134 + CCNA_01653 0.47 +1.9 1,775,164 - CCNA_01653 0.51 -1.2 1,775,198 - CCNA_01653 0.55 +1.6 1,775,248 - CCNA_01653 0.61 -1.0 1,775,260 - CCNA_01653 0.62 +0.2 1,775,275 + CCNA_01653 0.64 +1.2 1,775,314 + CCNA_01653 0.69 +2.5 1,775,322 - CCNA_01653 0.70 +1.0 1,775,322 - CCNA_01653 0.70 -1.4 1,775,324 + CCNA_01653 0.70 +2.1 1,775,324 + CCNA_01653 0.70 +1.4 1,775,324 + CCNA_01653 0.70 +1.0 1,775,332 - CCNA_01653 0.71 -2.6 1,775,332 - CCNA_01653 0.71 -0.2 1,775,332 - CCNA_01653 0.71 +1.4 1,775,351 + CCNA_01653 0.73 +1.0 1,775,354 - CCNA_01653 0.74 +2.4 1,775,364 - CCNA_01653 0.75 +2.5 1,775,506 + +2.3 1,775,563 + +1.8 1,775,590 + +1.2 1,775,598 - -0.1 1,775,608 - -1.1 1,775,638 + +1.1 1,775,656 - CCNA_01654 0.10 -0.3 1,775,815 - CCNA_01654 0.29 -0.4 1,775,817 + CCNA_01654 0.29 +1.0 1,775,842 + CCNA_01654 0.32 +1.4 1,775,850 - CCNA_01654 0.33 +1.1 1,775,869 + CCNA_01654 0.35 +1.5 1,775,888 + CCNA_01654 0.38 +1.2 1,775,896 - CCNA_01654 0.39 -0.0 1,775,944 - CCNA_01654 0.44 -1.1 1,775,944 - CCNA_01654 0.44 +1.8 1,775,978 + CCNA_01654 0.48 +1.5 1,776,067 - CCNA_01654 0.59 -1.3 1,776,068 - CCNA_01654 0.59 -0.9 1,776,138 + CCNA_01654 0.67 +0.3 1,776,138 + CCNA_01654 0.67 +1.1 1,776,138 + CCNA_01654 0.67 +1.3 1,776,159 + CCNA_01654 0.69 +1.4 1,776,194 + CCNA_01654 0.74 +0.9 1,776,293 + CCNA_01654 0.85 +1.4 1,776,294 + CCNA_01654 0.85 +1.4 1,776,302 - CCNA_01654 0.86 -0.2 1,776,382 + +0.5 1,776,457 + +0.8 1,776,465 - -0.2 1,776,507 - -0.9 1,776,564 + CCNA_01655 0.12 +0.6 1,776,572 - CCNA_01655 0.13 +0.6
Or see this region's nucleotide sequence