Experiment: D-Salicin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00865 and CCNA_00866 are separated by 16 nucleotides CCNA_00866 and CCNA_00867 are separated by 186 nucleotides CCNA_00867 and CCNA_03889 are separated by 254 nucleotides
CCNA_00865: CCNA_00865 - alpha-ketoglutaric semialdehyde dehydrogenase xylA, at 943,210 to 944,646
_00865
CCNA_00866: CCNA_00866 - 2-keto-3-deoxyxylonate dehydratase XylX (EC 4.2.1.141) <small>(from data)</small>, at 944,663 to 945,817
_00866
CCNA_00867: CCNA_00867 - hypothetical protein, at 946,004 to 946,492
_00867
CCNA_03889: CCNA_03889 - hypothetical protein, at 946,747 to 947,268
_03889
Position (kb) 944
945
946 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 943.690 kb on - strand, within CCNA_00865 at 943.702 kb on + strand, within CCNA_00865 at 943.702 kb on - strand, within CCNA_00865 at 943.723 kb on - strand, within CCNA_00865 at 943.802 kb on + strand, within CCNA_00865 at 943.802 kb on + strand, within CCNA_00865 at 943.802 kb on + strand, within CCNA_00865 at 943.807 kb on + strand, within CCNA_00865 at 943.834 kb on + strand, within CCNA_00865 at 943.842 kb on - strand, within CCNA_00865 at 943.856 kb on + strand, within CCNA_00865 at 943.858 kb on + strand, within CCNA_00865 at 943.863 kb on + strand, within CCNA_00865 at 943.863 kb on + strand, within CCNA_00865 at 943.868 kb on + strand, within CCNA_00865 at 943.873 kb on + strand, within CCNA_00865 at 943.876 kb on - strand, within CCNA_00865 at 943.904 kb on + strand, within CCNA_00865 at 943.921 kb on + strand, within CCNA_00865 at 943.922 kb on - strand, within CCNA_00865 at 943.926 kb on + strand, within CCNA_00865 at 944.003 kb on + strand, within CCNA_00865 at 944.003 kb on + strand, within CCNA_00865 at 944.086 kb on - strand, within CCNA_00865 at 944.126 kb on + strand, within CCNA_00865 at 944.134 kb on - strand, within CCNA_00865 at 944.134 kb on - strand, within CCNA_00865 at 944.141 kb on + strand, within CCNA_00865 at 944.205 kb on - strand, within CCNA_00865 at 944.209 kb on + strand, within CCNA_00865 at 944.212 kb on - strand, within CCNA_00865 at 944.214 kb on + strand, within CCNA_00865 at 944.214 kb on + strand, within CCNA_00865 at 944.214 kb on + strand, within CCNA_00865 at 944.222 kb on - strand, within CCNA_00865 at 944.222 kb on - strand, within CCNA_00865 at 944.222 kb on - strand, within CCNA_00865 at 944.242 kb on + strand, within CCNA_00865 at 944.243 kb on - strand, within CCNA_00865 at 944.270 kb on + strand, within CCNA_00865 at 944.270 kb on + strand, within CCNA_00865 at 944.278 kb on + strand, within CCNA_00865 at 944.293 kb on + strand, within CCNA_00865 at 944.293 kb on + strand, within CCNA_00865 at 944.298 kb on + strand, within CCNA_00865 at 944.301 kb on - strand, within CCNA_00865 at 944.301 kb on - strand, within CCNA_00865 at 944.365 kb on + strand, within CCNA_00865 at 944.374 kb on - strand at 944.408 kb on - strand, within CCNA_00865 at 944.408 kb on - strand, within CCNA_00865 at 944.427 kb on + strand, within CCNA_00865 at 944.497 kb on - strand, within CCNA_00865 at 944.519 kb on + strand at 944.527 kb on - strand at 944.536 kb on + strand at 944.558 kb on + strand at 944.574 kb on + strand at 944.574 kb on + strand at 944.636 kb on - strand at 944.669 kb on - strand at 944.698 kb on + strand at 944.701 kb on - strand at 944.706 kb on - strand at 944.730 kb on - strand at 944.816 kb on - strand, within CCNA_00866 at 944.818 kb on + strand, within CCNA_00866 at 944.842 kb on - strand, within CCNA_00866 at 944.901 kb on + strand, within CCNA_00866 at 944.901 kb on + strand, within CCNA_00866 at 944.901 kb on + strand, within CCNA_00866 at 944.901 kb on + strand, within CCNA_00866 at 944.901 kb on + strand, within CCNA_00866 at 944.909 kb on - strand, within CCNA_00866 at 944.909 kb on - strand, within CCNA_00866 at 944.909 kb on - strand, within CCNA_00866 at 944.909 kb on - strand, within CCNA_00866 at 944.909 kb on - strand, within CCNA_00866 at 944.942 kb on - strand, within CCNA_00866 at 944.957 kb on - strand, within CCNA_00866 at 944.968 kb on + strand, within CCNA_00866 at 944.981 kb on - strand at 945.086 kb on - strand, within CCNA_00866 at 945.089 kb on - strand, within CCNA_00866 at 945.101 kb on + strand, within CCNA_00866 at 945.109 kb on - strand, within CCNA_00866 at 945.136 kb on + strand, within CCNA_00866 at 945.144 kb on - strand, within CCNA_00866 at 945.149 kb on + strand, within CCNA_00866 at 945.167 kb on + strand, within CCNA_00866 at 945.167 kb on + strand, within CCNA_00866 at 945.167 kb on + strand, within CCNA_00866 at 945.172 kb on + strand, within CCNA_00866 at 945.175 kb on - strand, within CCNA_00866 at 945.175 kb on - strand, within CCNA_00866 at 945.175 kb on - strand, within CCNA_00866 at 945.175 kb on - strand, within CCNA_00866 at 945.191 kb on + strand, within CCNA_00866 at 945.237 kb on + strand, within CCNA_00866 at 945.269 kb on - strand, within CCNA_00866 at 945.271 kb on + strand, within CCNA_00866 at 945.273 kb on + strand, within CCNA_00866 at 945.318 kb on + strand, within CCNA_00866 at 945.324 kb on - strand, within CCNA_00866 at 945.404 kb on - strand, within CCNA_00866 at 945.481 kb on - strand, within CCNA_00866 at 945.494 kb on + strand, within CCNA_00866 at 945.494 kb on + strand, within CCNA_00866 at 945.494 kb on + strand, within CCNA_00866 at 945.495 kb on - strand, within CCNA_00866 at 945.517 kb on - strand, within CCNA_00866 at 945.543 kb on + strand, within CCNA_00866 at 945.548 kb on + strand, within CCNA_00866 at 945.555 kb on + strand, within CCNA_00866 at 945.565 kb on + strand, within CCNA_00866 at 945.573 kb on + strand, within CCNA_00866 at 945.578 kb on - strand, within CCNA_00866 at 945.583 kb on - strand, within CCNA_00866 at 945.583 kb on - strand, within CCNA_00866 at 945.584 kb on + strand, within CCNA_00866 at 945.585 kb on + strand, within CCNA_00866 at 945.621 kb on + strand, within CCNA_00866 at 945.621 kb on + strand, within CCNA_00866 at 945.621 kb on + strand, within CCNA_00866 at 945.621 kb on + strand, within CCNA_00866 at 945.621 kb on + strand, within CCNA_00866 at 945.629 kb on - strand, within CCNA_00866 at 945.629 kb on - strand, within CCNA_00866 at 945.629 kb on - strand, within CCNA_00866 at 945.629 kb on - strand, within CCNA_00866 at 945.629 kb on - strand at 945.663 kb on - strand, within CCNA_00866 at 945.668 kb on + strand, within CCNA_00866 at 945.681 kb on - strand, within CCNA_00866 at 945.682 kb on + strand, within CCNA_00866 at 945.705 kb on + strand at 945.745 kb on - strand at 945.762 kb on + strand at 945.770 kb on - strand at 945.781 kb on - strand at 945.781 kb on - strand at 945.868 kb on - strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.924 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 946.011 kb on + strand at 946.065 kb on + strand, within CCNA_00867 at 946.065 kb on - strand, within CCNA_00867 at 946.065 kb on - strand, within CCNA_00867 at 946.132 kb on + strand, within CCNA_00867 at 946.135 kb on - strand, within CCNA_00867 at 946.143 kb on + strand, within CCNA_00867 at 946.143 kb on + strand, within CCNA_00867 at 946.146 kb on + strand, within CCNA_00867 at 946.151 kb on - strand, within CCNA_00867 at 946.151 kb on - strand, within CCNA_00867 at 946.151 kb on - strand, within CCNA_00867 at 946.151 kb on - strand, within CCNA_00867 at 946.161 kb on + strand, within CCNA_00867 at 946.168 kb on - strand, within CCNA_00867 at 946.190 kb on + strand, within CCNA_00867 at 946.190 kb on + strand, within CCNA_00867 at 946.198 kb on - strand, within CCNA_00867 at 946.198 kb on - strand, within CCNA_00867 at 946.237 kb on + strand, within CCNA_00867 at 946.237 kb on + strand, within CCNA_00867 at 946.245 kb on - strand, within CCNA_00867 at 946.245 kb on - strand, within CCNA_00867 at 946.245 kb on - strand, within CCNA_00867 at 946.245 kb on - strand, within CCNA_00867 at 946.245 kb on - strand, within CCNA_00867 at 946.246 kb on - strand, within CCNA_00867 at 946.304 kb on + strand, within CCNA_00867 at 946.304 kb on + strand, within CCNA_00867 at 946.304 kb on + strand, within CCNA_00867 at 946.312 kb on - strand, within CCNA_00867 at 946.312 kb on - strand, within CCNA_00867 at 946.312 kb on - strand, within CCNA_00867 at 946.312 kb on - strand, within CCNA_00867 at 946.312 kb on - strand, within CCNA_00867 at 946.324 kb on + strand, within CCNA_00867 at 946.324 kb on + strand, within CCNA_00867 at 946.324 kb on + strand, within CCNA_00867 at 946.324 kb on + strand, within CCNA_00867 at 946.332 kb on - strand, within CCNA_00867 at 946.334 kb on + strand, within CCNA_00867 at 946.340 kb on + strand, within CCNA_00867 at 946.376 kb on + strand, within CCNA_00867 at 946.381 kb on + strand, within CCNA_00867 at 946.389 kb on - strand, within CCNA_00867 at 946.405 kb on + strand, within CCNA_00867 at 946.405 kb on + strand, within CCNA_00867 at 946.413 kb on - strand, within CCNA_00867 at 946.457 kb on + strand at 946.464 kb on + strand at 946.494 kb on - strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.517 kb on - strand at 946.553 kb on - strand at 946.589 kb on + strand at 946.609 kb on - strand at 946.655 kb on + strand at 946.656 kb on + strand at 946.656 kb on + strand at 946.658 kb on - strand at 946.664 kb on - strand at 946.685 kb on + strand at 946.711 kb on - strand at 946.727 kb on - strand at 946.741 kb on + strand at 946.767 kb on - strand at 946.809 kb on + strand, within CCNA_03889 at 946.815 kb on + strand, within CCNA_03889 at 946.815 kb on + strand, within CCNA_03889 at 946.815 kb on + strand, within CCNA_03889 at 946.815 kb on + strand, within CCNA_03889 at 946.815 kb on + strand, within CCNA_03889
Per-strain Table
Position Strand Gene LocusTag Fraction D-Salicin (C) remove 943,690 - CCNA_00865 0.33 -1.1 943,702 + CCNA_00865 0.34 -0.3 943,702 - CCNA_00865 0.34 +1.3 943,723 - CCNA_00865 0.36 -0.6 943,802 + CCNA_00865 0.41 -1.1 943,802 + CCNA_00865 0.41 -0.9 943,802 + CCNA_00865 0.41 -1.5 943,807 + CCNA_00865 0.42 -2.0 943,834 + CCNA_00865 0.43 -0.9 943,842 - CCNA_00865 0.44 -0.4 943,856 + CCNA_00865 0.45 -0.3 943,858 + CCNA_00865 0.45 +0.3 943,863 + CCNA_00865 0.45 -0.1 943,863 + CCNA_00865 0.45 +1.9 943,868 + CCNA_00865 0.46 -1.0 943,873 + CCNA_00865 0.46 -0.5 943,876 - CCNA_00865 0.46 +0.2 943,904 + CCNA_00865 0.48 +1.3 943,921 + CCNA_00865 0.49 -2.0 943,922 - CCNA_00865 0.50 -2.4 943,926 + CCNA_00865 0.50 -0.2 944,003 + CCNA_00865 0.55 -2.2 944,003 + CCNA_00865 0.55 -0.7 944,086 - CCNA_00865 0.61 +0.6 944,126 + CCNA_00865 0.64 +0.3 944,134 - CCNA_00865 0.64 -1.6 944,134 - CCNA_00865 0.64 +0.5 944,141 + CCNA_00865 0.65 +2.2 944,205 - CCNA_00865 0.69 +2.4 944,209 + CCNA_00865 0.70 +0.4 944,212 - CCNA_00865 0.70 +0.2 944,214 + CCNA_00865 0.70 +0.9 944,214 + CCNA_00865 0.70 -1.1 944,214 + CCNA_00865 0.70 -0.5 944,222 - CCNA_00865 0.70 +0.2 944,222 - CCNA_00865 0.70 -2.7 944,222 - CCNA_00865 0.70 +0.1 944,242 + CCNA_00865 0.72 -2.9 944,243 - CCNA_00865 0.72 -0.3 944,270 + CCNA_00865 0.74 -0.7 944,270 + CCNA_00865 0.74 +0.4 944,278 + CCNA_00865 0.74 -1.8 944,293 + CCNA_00865 0.75 -0.9 944,293 + CCNA_00865 0.75 -1.1 944,298 + CCNA_00865 0.76 -1.3 944,301 - CCNA_00865 0.76 -1.7 944,301 - CCNA_00865 0.76 -2.9 944,365 + CCNA_00865 0.80 -1.9 944,374 - +1.4 944,408 - CCNA_00865 0.83 -0.1 944,408 - CCNA_00865 0.83 -0.9 944,427 + CCNA_00865 0.85 +0.1 944,497 - CCNA_00865 0.90 -0.5 944,519 + -0.9 944,527 - -0.7 944,536 + -1.9 944,558 + +1.4 944,574 + -1.3 944,574 + -1.3 944,636 - -1.5 944,669 - -0.3 944,698 + -0.3 944,701 - +0.3 944,706 - -0.4 944,730 - -1.8 944,816 - CCNA_00866 0.13 -2.3 944,818 + CCNA_00866 0.13 -2.1 944,842 - CCNA_00866 0.15 -2.2 944,901 + CCNA_00866 0.21 -0.9 944,901 + CCNA_00866 0.21 -1.4 944,901 + CCNA_00866 0.21 -2.3 944,901 + CCNA_00866 0.21 -0.8 944,901 + CCNA_00866 0.21 +0.3 944,909 - CCNA_00866 0.21 -1.3 944,909 - CCNA_00866 0.21 -1.4 944,909 - CCNA_00866 0.21 -3.0 944,909 - CCNA_00866 0.21 +0.4 944,909 - CCNA_00866 0.21 -1.4 944,942 - CCNA_00866 0.24 +0.1 944,957 - CCNA_00866 0.25 +0.6 944,968 + CCNA_00866 0.26 +1.6 944,981 - +2.4 945,086 - CCNA_00866 0.37 -0.6 945,089 - CCNA_00866 0.37 -0.1 945,101 + CCNA_00866 0.38 -0.7 945,109 - CCNA_00866 0.39 -1.9 945,136 + CCNA_00866 0.41 -1.9 945,144 - CCNA_00866 0.42 -1.1 945,149 + CCNA_00866 0.42 -0.9 945,167 + CCNA_00866 0.44 -0.7 945,167 + CCNA_00866 0.44 -2.0 945,167 + CCNA_00866 0.44 -0.4 945,172 + CCNA_00866 0.44 -2.4 945,175 - CCNA_00866 0.44 -2.9 945,175 - CCNA_00866 0.44 -3.0 945,175 - CCNA_00866 0.44 -0.1 945,175 - CCNA_00866 0.44 -1.1 945,191 + CCNA_00866 0.46 +0.1 945,237 + CCNA_00866 0.50 -2.8 945,269 - CCNA_00866 0.52 +0.0 945,271 + CCNA_00866 0.53 +1.0 945,273 + CCNA_00866 0.53 -1.1 945,318 + CCNA_00866 0.57 +0.5 945,324 - CCNA_00866 0.57 -0.1 945,404 - CCNA_00866 0.64 -0.0 945,481 - CCNA_00866 0.71 +1.0 945,494 + CCNA_00866 0.72 -0.0 945,494 + CCNA_00866 0.72 -2.2 945,494 + CCNA_00866 0.72 -2.3 945,495 - CCNA_00866 0.72 +0.2 945,517 - CCNA_00866 0.74 -2.2 945,543 + CCNA_00866 0.76 +1.0 945,548 + CCNA_00866 0.77 -1.1 945,555 + CCNA_00866 0.77 -1.6 945,565 + CCNA_00866 0.78 -0.6 945,573 + CCNA_00866 0.79 -0.7 945,578 - CCNA_00866 0.79 +0.4 945,583 - CCNA_00866 0.80 -0.4 945,583 - CCNA_00866 0.80 -0.7 945,584 + CCNA_00866 0.80 -1.1 945,585 + CCNA_00866 0.80 -0.7 945,621 + CCNA_00866 0.83 -1.1 945,621 + CCNA_00866 0.83 -1.8 945,621 + CCNA_00866 0.83 -0.6 945,621 + CCNA_00866 0.83 -2.6 945,621 + CCNA_00866 0.83 -1.0 945,629 - CCNA_00866 0.84 -0.5 945,629 - CCNA_00866 0.84 -0.9 945,629 - CCNA_00866 0.84 -0.3 945,629 - CCNA_00866 0.84 -0.9 945,629 - +2.4 945,663 - CCNA_00866 0.87 -2.2 945,668 + CCNA_00866 0.87 -0.1 945,681 - CCNA_00866 0.88 -1.6 945,682 + CCNA_00866 0.88 +1.6 945,705 + -1.4 945,745 - +0.4 945,762 + +0.3 945,770 - -1.9 945,781 - -1.3 945,781 - -1.3 945,868 - -1.4 945,921 + -1.2 945,921 + +0.1 945,921 + +1.4 945,921 + -2.7 945,921 + -0.8 945,921 + +0.1 945,921 + -0.2 945,921 + +0.3 945,921 + +0.6 945,921 + +0.4 945,921 + +2.4 945,921 + -1.4 945,924 - +1.3 945,929 - -1.8 945,929 - -0.9 945,929 - -0.5 945,929 - -1.1 945,929 - -1.3 945,929 - +1.4 945,929 - -0.9 945,929 - +0.1 946,011 + +2.8 946,065 + CCNA_00867 0.12 +1.4 946,065 - CCNA_00867 0.12 -0.4 946,065 - CCNA_00867 0.12 -0.1 946,132 + CCNA_00867 0.26 -1.0 946,135 - CCNA_00867 0.27 +0.2 946,143 + CCNA_00867 0.28 +0.4 946,143 + CCNA_00867 0.28 +1.4 946,146 + CCNA_00867 0.29 +1.5 946,151 - CCNA_00867 0.30 -0.4 946,151 - CCNA_00867 0.30 -2.8 946,151 - CCNA_00867 0.30 +0.2 946,151 - CCNA_00867 0.30 -0.3 946,161 + CCNA_00867 0.32 -0.4 946,168 - CCNA_00867 0.34 -0.3 946,190 + CCNA_00867 0.38 -0.2 946,190 + CCNA_00867 0.38 -0.1 946,198 - CCNA_00867 0.40 -0.4 946,198 - CCNA_00867 0.40 -0.4 946,237 + CCNA_00867 0.48 +0.9 946,237 + CCNA_00867 0.48 +0.4 946,245 - CCNA_00867 0.49 -1.1 946,245 - CCNA_00867 0.49 -1.0 946,245 - CCNA_00867 0.49 -0.6 946,245 - CCNA_00867 0.49 -1.7 946,245 - CCNA_00867 0.49 -1.6 946,246 - CCNA_00867 0.49 -0.1 946,304 + CCNA_00867 0.61 +1.2 946,304 + CCNA_00867 0.61 +1.7 946,304 + CCNA_00867 0.61 +0.8 946,312 - CCNA_00867 0.63 -0.4 946,312 - CCNA_00867 0.63 +1.7 946,312 - CCNA_00867 0.63 +0.9 946,312 - CCNA_00867 0.63 +1.2 946,312 - CCNA_00867 0.63 -0.2 946,324 + CCNA_00867 0.65 -0.1 946,324 + CCNA_00867 0.65 +1.5 946,324 + CCNA_00867 0.65 +1.1 946,324 + CCNA_00867 0.65 +1.2 946,332 - CCNA_00867 0.67 -0.0 946,334 + CCNA_00867 0.67 +0.9 946,340 + CCNA_00867 0.69 +0.1 946,376 + CCNA_00867 0.76 +1.3 946,381 + CCNA_00867 0.77 +0.5 946,389 - CCNA_00867 0.79 +0.1 946,405 + CCNA_00867 0.82 -0.1 946,405 + CCNA_00867 0.82 +0.2 946,413 - CCNA_00867 0.84 +0.1 946,457 + -0.3 946,464 + +2.0 946,494 - -1.3 946,509 + +0.5 946,509 + +0.1 946,509 + +0.3 946,509 + +0.5 946,509 + +0.5 946,509 + +0.3 946,509 + +1.4 946,509 + +0.9 946,517 - -0.4 946,553 - -1.0 946,589 + -1.0 946,609 - +0.8 946,655 + -0.1 946,656 + -2.1 946,656 + -0.4 946,658 - -0.9 946,664 - -0.4 946,685 + +1.7 946,711 - +0.0 946,727 - -0.7 946,741 + +0.3 946,767 - -2.4 946,809 + CCNA_03889 0.12 +0.1 946,815 + CCNA_03889 0.13 +1.1 946,815 + CCNA_03889 0.13 +0.7 946,815 + CCNA_03889 0.13 +0.1 946,815 + CCNA_03889 0.13 +0.2 946,815 + CCNA_03889 0.13 -0.6
Or see this region's nucleotide sequence