Experiment: D-Salicin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00386 and CCNA_00387 are separated by 129 nucleotides CCNA_00387 and CCNA_00388 are separated by 127 nucleotides CCNA_00388 and CCNA_00389 are separated by 97 nucleotides CCNA_00389 and CCNA_00390 are separated by 103 nucleotides
CCNA_00386: CCNA_00386 - DNA-3-methyladenine glycosylase, at 402,858 to 403,445
_00386
CCNA_00387: CCNA_00387 - hypothetical protein, at 403,575 to 403,997
_00387
CCNA_00388: CCNA_00388 - esterase lipase Family protein, at 404,125 to 405,006
_00388
CCNA_00389: CCNA_00389 - aminomethyltransferase family protein, at 405,104 to 405,895
_00389
CCNA_00390: CCNA_00390 - ADP-heptose--LPS heptosyltransferase, at 405,999 to 407,213
_00390
Position (kb) 404
405
406 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 403.140 kb on + strand, within CCNA_00386 at 403.177 kb on + strand, within CCNA_00386 at 403.181 kb on - strand, within CCNA_00386 at 403.185 kb on - strand, within CCNA_00386 at 403.185 kb on - strand, within CCNA_00386 at 403.275 kb on - strand, within CCNA_00386 at 403.345 kb on + strand, within CCNA_00386 at 403.348 kb on - strand, within CCNA_00386 at 403.372 kb on - strand, within CCNA_00386 at 403.395 kb on - strand at 403.408 kb on - strand at 403.457 kb on + strand at 403.465 kb on - strand at 403.549 kb on - strand at 403.550 kb on + strand at 403.550 kb on + strand at 403.558 kb on - strand at 403.583 kb on + strand at 403.583 kb on + strand at 403.583 kb on + strand at 403.591 kb on - strand at 403.591 kb on - strand at 403.639 kb on + strand, within CCNA_00387 at 403.639 kb on + strand, within CCNA_00387 at 403.639 kb on + strand, within CCNA_00387 at 403.639 kb on + strand, within CCNA_00387 at 403.639 kb on + strand, within CCNA_00387 at 403.644 kb on + strand, within CCNA_00387 at 403.654 kb on + strand, within CCNA_00387 at 403.657 kb on - strand, within CCNA_00387 at 403.679 kb on + strand, within CCNA_00387 at 403.809 kb on + strand, within CCNA_00387 at 403.827 kb on + strand, within CCNA_00387 at 403.842 kb on + strand, within CCNA_00387 at 403.850 kb on - strand, within CCNA_00387 at 403.866 kb on + strand, within CCNA_00387 at 403.930 kb on + strand, within CCNA_00387 at 403.965 kb on - strand at 403.976 kb on - strand at 403.997 kb on - strand at 404.029 kb on - strand at 404.030 kb on - strand at 404.125 kb on - strand at 404.148 kb on - strand at 404.193 kb on - strand at 404.199 kb on + strand at 404.214 kb on + strand, within CCNA_00388 at 404.222 kb on - strand, within CCNA_00388 at 404.230 kb on - strand, within CCNA_00388 at 404.230 kb on - strand, within CCNA_00388 at 404.230 kb on - strand, within CCNA_00388 at 404.247 kb on + strand, within CCNA_00388 at 404.290 kb on + strand, within CCNA_00388 at 404.290 kb on + strand, within CCNA_00388 at 404.305 kb on - strand, within CCNA_00388 at 404.318 kb on + strand, within CCNA_00388 at 404.346 kb on + strand, within CCNA_00388 at 404.349 kb on - strand, within CCNA_00388 at 404.374 kb on - strand, within CCNA_00388 at 404.374 kb on - strand, within CCNA_00388 at 404.374 kb on - strand, within CCNA_00388 at 404.407 kb on - strand, within CCNA_00388 at 404.415 kb on - strand, within CCNA_00388 at 404.415 kb on - strand, within CCNA_00388 at 404.416 kb on - strand, within CCNA_00388 at 404.435 kb on - strand, within CCNA_00388 at 404.436 kb on - strand, within CCNA_00388 at 404.438 kb on + strand, within CCNA_00388 at 404.446 kb on - strand, within CCNA_00388 at 404.455 kb on - strand, within CCNA_00388 at 404.482 kb on - strand, within CCNA_00388 at 404.564 kb on + strand, within CCNA_00388 at 404.608 kb on - strand, within CCNA_00388 at 404.619 kb on + strand, within CCNA_00388 at 404.619 kb on + strand, within CCNA_00388 at 404.619 kb on + strand, within CCNA_00388 at 404.619 kb on + strand, within CCNA_00388 at 404.619 kb on + strand, within CCNA_00388 at 404.627 kb on - strand, within CCNA_00388 at 404.627 kb on - strand, within CCNA_00388 at 404.627 kb on - strand, within CCNA_00388 at 404.640 kb on + strand, within CCNA_00388 at 404.640 kb on + strand, within CCNA_00388 at 404.648 kb on - strand, within CCNA_00388 at 404.648 kb on - strand, within CCNA_00388 at 404.648 kb on - strand, within CCNA_00388 at 404.671 kb on + strand, within CCNA_00388 at 404.674 kb on + strand, within CCNA_00388 at 404.679 kb on - strand, within CCNA_00388 at 404.679 kb on - strand, within CCNA_00388 at 404.696 kb on - strand, within CCNA_00388 at 404.697 kb on - strand, within CCNA_00388 at 404.697 kb on - strand, within CCNA_00388 at 404.704 kb on - strand, within CCNA_00388 at 404.704 kb on - strand, within CCNA_00388 at 404.704 kb on - strand, within CCNA_00388 at 404.714 kb on - strand, within CCNA_00388 at 404.722 kb on + strand, within CCNA_00388 at 404.728 kb on + strand, within CCNA_00388 at 404.733 kb on + strand, within CCNA_00388 at 404.752 kb on - strand, within CCNA_00388 at 404.785 kb on - strand, within CCNA_00388 at 404.812 kb on + strand, within CCNA_00388 at 404.858 kb on + strand, within CCNA_00388 at 404.907 kb on + strand, within CCNA_00388 at 404.912 kb on + strand, within CCNA_00388 at 404.936 kb on + strand at 404.943 kb on - strand at 404.953 kb on - strand at 404.968 kb on - strand at 405.103 kb on - strand at 405.119 kb on - strand at 405.313 kb on - strand, within CCNA_00389 at 405.428 kb on + strand, within CCNA_00389 at 405.452 kb on + strand, within CCNA_00389 at 405.516 kb on - strand, within CCNA_00389 at 405.724 kb on + strand, within CCNA_00389 at 405.941 kb on - strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.983 kb on + strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.991 kb on - strand at 405.999 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Salicin (C) remove 403,140 + CCNA_00386 0.48 -0.5 403,177 + CCNA_00386 0.54 -1.4 403,181 - CCNA_00386 0.55 -1.0 403,185 - CCNA_00386 0.56 -0.0 403,185 - CCNA_00386 0.56 -0.7 403,275 - CCNA_00386 0.71 -0.3 403,345 + CCNA_00386 0.83 -0.4 403,348 - CCNA_00386 0.83 -0.3 403,372 - CCNA_00386 0.87 -0.3 403,395 - +0.1 403,408 - -1.6 403,457 + -0.7 403,465 - -1.2 403,549 - -1.0 403,550 + -0.1 403,550 + -1.4 403,558 - -1.1 403,583 + -1.2 403,583 + -0.5 403,583 + -1.5 403,591 - -1.3 403,591 - -0.8 403,639 + CCNA_00387 0.15 -0.4 403,639 + CCNA_00387 0.15 -0.5 403,639 + CCNA_00387 0.15 +0.4 403,639 + CCNA_00387 0.15 -0.4 403,639 + CCNA_00387 0.15 -1.3 403,644 + CCNA_00387 0.16 +0.3 403,654 + CCNA_00387 0.19 +1.3 403,657 - CCNA_00387 0.19 -0.8 403,679 + CCNA_00387 0.25 -0.4 403,809 + CCNA_00387 0.55 -1.3 403,827 + CCNA_00387 0.60 -0.3 403,842 + CCNA_00387 0.63 +0.0 403,850 - CCNA_00387 0.65 -1.1 403,866 + CCNA_00387 0.69 +1.3 403,930 + CCNA_00387 0.84 -0.2 403,965 - +0.5 403,976 - +0.5 403,997 - +1.0 404,029 - +0.5 404,030 - +1.2 404,125 - +1.4 404,148 - +1.3 404,193 - +1.5 404,199 + +0.6 404,214 + CCNA_00388 0.10 +0.5 404,222 - CCNA_00388 0.11 +1.0 404,230 - CCNA_00388 0.12 +0.3 404,230 - CCNA_00388 0.12 +2.2 404,230 - CCNA_00388 0.12 +0.5 404,247 + CCNA_00388 0.14 -1.1 404,290 + CCNA_00388 0.19 -0.6 404,290 + CCNA_00388 0.19 -0.4 404,305 - CCNA_00388 0.20 +0.3 404,318 + CCNA_00388 0.22 -1.3 404,346 + CCNA_00388 0.25 -0.8 404,349 - CCNA_00388 0.25 +1.2 404,374 - CCNA_00388 0.28 +1.6 404,374 - CCNA_00388 0.28 +2.7 404,374 - CCNA_00388 0.28 +0.7 404,407 - CCNA_00388 0.32 +0.7 404,415 - CCNA_00388 0.33 +0.5 404,415 - CCNA_00388 0.33 -0.2 404,416 - CCNA_00388 0.33 -0.2 404,435 - CCNA_00388 0.35 +0.5 404,436 - CCNA_00388 0.35 +1.0 404,438 + CCNA_00388 0.35 -1.7 404,446 - CCNA_00388 0.36 -0.1 404,455 - CCNA_00388 0.37 +2.4 404,482 - CCNA_00388 0.40 -0.4 404,564 + CCNA_00388 0.50 -2.4 404,608 - CCNA_00388 0.55 +0.4 404,619 + CCNA_00388 0.56 -2.2 404,619 + CCNA_00388 0.56 +1.4 404,619 + CCNA_00388 0.56 -0.1 404,619 + CCNA_00388 0.56 -0.4 404,619 + CCNA_00388 0.56 -0.9 404,627 - CCNA_00388 0.57 -0.3 404,627 - CCNA_00388 0.57 +0.9 404,627 - CCNA_00388 0.57 -0.5 404,640 + CCNA_00388 0.58 +0.5 404,640 + CCNA_00388 0.58 +0.8 404,648 - CCNA_00388 0.59 +0.7 404,648 - CCNA_00388 0.59 +1.2 404,648 - CCNA_00388 0.59 +0.9 404,671 + CCNA_00388 0.62 -1.6 404,674 + CCNA_00388 0.62 +0.3 404,679 - CCNA_00388 0.63 +2.1 404,679 - CCNA_00388 0.63 +1.2 404,696 - CCNA_00388 0.65 +0.0 404,697 - CCNA_00388 0.65 +2.5 404,697 - CCNA_00388 0.65 +0.5 404,704 - CCNA_00388 0.66 +0.4 404,704 - CCNA_00388 0.66 +0.5 404,704 - CCNA_00388 0.66 +0.9 404,714 - CCNA_00388 0.67 +0.9 404,722 + CCNA_00388 0.68 -1.6 404,728 + CCNA_00388 0.68 -1.2 404,733 + CCNA_00388 0.69 -1.8 404,752 - CCNA_00388 0.71 -0.5 404,785 - CCNA_00388 0.75 +1.2 404,812 + CCNA_00388 0.78 -0.7 404,858 + CCNA_00388 0.83 -1.5 404,907 + CCNA_00388 0.89 -0.9 404,912 + CCNA_00388 0.89 +1.4 404,936 + -0.9 404,943 - -0.4 404,953 - +0.7 404,968 - +0.9 405,103 - -0.3 405,119 - +1.1 405,313 - CCNA_00389 0.26 -0.2 405,428 + CCNA_00389 0.41 -0.2 405,452 + CCNA_00389 0.44 +0.6 405,516 - CCNA_00389 0.52 +1.2 405,724 + CCNA_00389 0.78 +0.0 405,941 - +1.9 405,983 + -1.6 405,983 + -1.7 405,983 + -0.8 405,983 + +1.0 405,983 + -0.3 405,983 + -1.5 405,983 + -1.0 405,983 + -0.3 405,983 + +0.7 405,983 + -0.4 405,983 + +1.6 405,983 + -0.2 405,983 + +0.3 405,983 + -0.1 405,983 + -3.4 405,983 + -0.4 405,983 + +0.9 405,983 + -0.5 405,983 + -0.9 405,983 + -1.0 405,983 + -1.3 405,983 + -1.9 405,983 + -0.3 405,983 + -1.3 405,983 + +1.0 405,983 + -3.2 405,983 + -0.7 405,983 + -1.2 405,983 + +0.2 405,983 + +0.6 405,983 + -2.8 405,983 + -0.2 405,983 + -0.2 405,991 - -2.5 405,991 - -0.5 405,991 - -1.5 405,991 - -0.3 405,991 - -1.9 405,991 - +0.1 405,991 - -1.1 405,991 - -1.6 405,991 - +1.0 405,991 - -1.4 405,991 - +0.6 405,991 - -0.8 405,991 - -1.9 405,991 - -3.1 405,991 - -1.0 405,991 - -1.4 405,991 - -1.4 405,991 - -1.3 405,991 - -1.7 405,991 - -2.0 405,991 - -2.3 405,991 - -1.1 405,991 - -3.5 405,991 - -1.8 405,991 - -1.2 405,991 - -0.6 405,991 - -2.8 405,991 - -0.7 405,999 + +1.6
Or see this region's nucleotide sequence