Experiment: R2A with Polymyxin B sulfate 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS21480 and CA265_RS21485 are separated by 73 nucleotides CA265_RS21485 and CA265_RS21490 overlap by 1 nucleotides CA265_RS21490 and CA265_RS21495 overlap by 11 nucleotides
CA265_RS21480: CA265_RS21480 - GNAT family N-acetyltransferase, at 5,291,085 to 5,291,552
_RS21480
CA265_RS21485: CA265_RS21485 - acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase, at 5,291,626 to 5,292,411
_RS21485
CA265_RS21490: CA265_RS21490 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase, at 5,292,411 to 5,293,823
_RS21490
CA265_RS21495: CA265_RS21495 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 5,293,813 to 5,294,889
_RS21495
Position (kb) 5292
5293
5294 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5291.557 kb on - strand at 5291.602 kb on - strand at 5291.842 kb on - strand, within CA265_RS21485 at 5291.853 kb on - strand, within CA265_RS21485 at 5291.899 kb on - strand, within CA265_RS21485 at 5291.931 kb on - strand, within CA265_RS21485 at 5291.957 kb on - strand, within CA265_RS21485 at 5292.011 kb on - strand, within CA265_RS21485 at 5292.155 kb on - strand, within CA265_RS21485 at 5292.341 kb on - strand at 5292.391 kb on - strand at 5292.393 kb on - strand at 5292.393 kb on - strand at 5292.413 kb on - strand at 5293.855 kb on - strand at 5293.963 kb on - strand, within CA265_RS21495 at 5293.990 kb on - strand, within CA265_RS21495 at 5293.990 kb on - strand, within CA265_RS21495 at 5294.035 kb on - strand, within CA265_RS21495 at 5294.111 kb on - strand, within CA265_RS21495 at 5294.239 kb on - strand, within CA265_RS21495 at 5294.296 kb on - strand, within CA265_RS21495 at 5294.739 kb on - strand, within CA265_RS21495
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.016 mg/ml remove 5,291,557 - -0.2 5,291,602 - -0.5 5,291,842 - CA265_RS21485 0.27 -1.1 5,291,853 - CA265_RS21485 0.29 -1.8 5,291,899 - CA265_RS21485 0.35 -0.5 5,291,931 - CA265_RS21485 0.39 -3.2 5,291,957 - CA265_RS21485 0.42 -0.4 5,292,011 - CA265_RS21485 0.49 -1.5 5,292,155 - CA265_RS21485 0.67 +0.2 5,292,341 - -2.7 5,292,391 - -0.8 5,292,393 - -1.7 5,292,393 - -1.1 5,292,413 - +0.4 5,293,855 - +0.5 5,293,963 - CA265_RS21495 0.14 +0.2 5,293,990 - CA265_RS21495 0.16 -1.4 5,293,990 - CA265_RS21495 0.16 -0.8 5,294,035 - CA265_RS21495 0.21 +0.2 5,294,111 - CA265_RS21495 0.28 -0.1 5,294,239 - CA265_RS21495 0.40 -2.6 5,294,296 - CA265_RS21495 0.45 -1.4 5,294,739 - CA265_RS21495 0.86 -0.8
Or see this region's nucleotide sequence