Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS20025

Experiment: R2A with Polymyxin B sulfate 0.016 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.016 mg/ml
4,950,107	+				+0.3
4,950,108	-				-0.6
4,950,110	-				-0.2
4,950,149	+				+0.8
4,950,220	+		CA265_RS20020	0.16	+1.2
4,950,277	+		CA265_RS20020	0.23	+0.5
4,950,391	+		CA265_RS20020	0.36	+1.0
4,950,392	-		CA265_RS20020	0.36	+0.6
4,950,524	+		CA265_RS20020	0.52	-0.9
4,950,528	+		CA265_RS20020	0.53	+0.0
4,950,528	+		CA265_RS20020	0.53	+0.2
4,950,553	+		CA265_RS20020	0.56	+0.4
4,950,554	-		CA265_RS20020	0.56	-0.8
4,950,554	-		CA265_RS20020	0.56	-0.9
4,950,567	-		CA265_RS20020	0.57	-1.0
4,950,567	-		CA265_RS20020	0.57	-0.5
4,950,573	+		CA265_RS20020	0.58	-0.2
4,950,574	-		CA265_RS20020	0.58	+1.0
4,950,578	+		CA265_RS20020	0.59	+0.1
4,950,599	-		CA265_RS20020	0.61	+1.0
4,950,599	-		CA265_RS20020	0.61	+0.2
4,950,656	+		CA265_RS20020	0.68	-0.2
4,950,695	+		CA265_RS20020	0.73	-0.1
4,950,700	-		CA265_RS20020	0.73	-0.0
4,950,755	-		CA265_RS20020	0.80	-0.2
4,950,818	-		CA265_RS20020	0.87	-0.9
4,950,820	-		CA265_RS20020	0.88	-1.4
4,950,867	-				+0.6
4,950,867	-				+1.2
4,950,890	+				+0.0
4,950,895	-				-0.0
4,950,923	-				-1.2
4,951,017	+				+0.7
4,951,026	+				-1.2
4,951,046	-				-0.2
4,951,121	-				+1.7
4,951,164	+				+1.1
4,951,206	+		CA265_RS20025	0.10	-0.4
4,951,222	+		CA265_RS20025	0.11	+0.6
4,951,222	+		CA265_RS20025	0.11	+0.3
4,951,223	-		CA265_RS20025	0.11	-0.0
4,951,223	-		CA265_RS20025	0.11	+0.2
4,951,233	+		CA265_RS20025	0.12	+0.1
4,951,233	+		CA265_RS20025	0.12	-0.2
4,951,233	+		CA265_RS20025	0.12	+1.2
4,951,234	-		CA265_RS20025	0.12	+1.0
4,951,299	-		CA265_RS20025	0.16	+0.8
4,951,375	+		CA265_RS20025	0.20	-0.0
4,951,401	+		CA265_RS20025	0.22	+0.6
4,951,412	-		CA265_RS20025	0.22	-0.1
4,951,523	+		CA265_RS20025	0.29	+1.2
4,951,579	-		CA265_RS20025	0.32	-0.1
4,951,582	-		CA265_RS20025	0.32	+0.9
4,951,753	+		CA265_RS20025	0.43	+0.0
4,951,753	+		CA265_RS20025	0.43	+0.4
4,951,783	+		CA265_RS20025	0.44	+0.4
4,951,792	+		CA265_RS20025	0.45	+0.2
4,951,793	-		CA265_RS20025	0.45	+1.1
4,951,863	-		CA265_RS20025	0.49	+0.1
4,951,948	-		CA265_RS20025	0.54	+1.4
4,951,955	+		CA265_RS20025	0.55	+0.6
4,951,956	-		CA265_RS20025	0.55	-1.3
4,951,968	-		CA265_RS20025	0.55	+0.2
4,951,968	-		CA265_RS20025	0.55	-0.1
4,952,147	+		CA265_RS20025	0.66	-0.6
4,952,148	-		CA265_RS20025	0.66	+0.2
4,952,148	-		CA265_RS20025	0.66	+0.7
4,952,152	+		CA265_RS20025	0.66	-1.8
4,952,206	-		CA265_RS20025	0.70	-0.0
4,952,242	-		CA265_RS20025	0.72	+0.9
4,952,253	+		CA265_RS20025	0.72	+0.0
4,952,264	+		CA265_RS20025	0.73	+0.4
4,952,307	-		CA265_RS20025	0.76	+0.0
4,952,307	-		CA265_RS20025	0.76	-0.4
4,952,308	+		CA265_RS20025	0.76	+0.1
4,952,308	+		CA265_RS20025	0.76	+1.2
4,952,309	-		CA265_RS20025	0.76	+0.6
4,952,309	-		CA265_RS20025	0.76	-1.0
4,952,340	+		CA265_RS20025	0.78	+0.6
4,952,341	-		CA265_RS20025	0.78	+0.3
4,952,341	-		CA265_RS20025	0.78	-0.7
4,952,352	+		CA265_RS20025	0.78	+0.1
4,952,364	-		CA265_RS20025	0.79	+1.1
4,952,364	-		CA265_RS20025	0.79	+0.8
4,952,447	-		CA265_RS20025	0.84	-0.3
4,952,480	-		CA265_RS20025	0.86	+1.1
4,952,492	-		CA265_RS20025	0.87	+0.5
4,952,495	+		CA265_RS20025	0.87	-0.9
4,952,701	-				+0.5
4,952,725	+				-0.3
4,952,761	-				+0.9
4,952,802	-				-1.2
4,952,894	+				+2.1
4,952,896	+				+3.3
4,952,897	-				+1.8
4,952,934	+				+2.6
4,953,066	+				+2.7
4,953,182	-				+1.0
4,953,278	+				-3.2
4,953,279	-				-1.6
4,953,335	-				-1.1
4,953,361	+		CA265_RS20030	0.11	-0.6
4,953,383	+		CA265_RS20030	0.12	-1.0
4,953,387	-		CA265_RS20030	0.12	-0.4
4,953,452	-		CA265_RS20030	0.14	-2.9
4,953,463	-		CA265_RS20030	0.15	-1.6
4,953,519	+		CA265_RS20030	0.17	-1.8
4,953,520	-		CA265_RS20030	0.17	-0.8
4,953,520	-		CA265_RS20030	0.17	+1.0
4,953,529	+		CA265_RS20030	0.17	-1.4
4,953,530	-		CA265_RS20030	0.18	-1.7
4,953,601	+		CA265_RS20030	0.20	-1.5
4,953,601	+		CA265_RS20030	0.20	-1.9
4,953,637	-		CA265_RS20030	0.22	-0.7
4,953,637	-		CA265_RS20030	0.22	-2.1
4,953,643	-		CA265_RS20030	0.22	-1.5
4,953,656	-		CA265_RS20030	0.23	-2.0
4,953,713	+		CA265_RS20030	0.25	-0.9
4,953,713	+		CA265_RS20030	0.25	-3.3
4,953,713	+		CA265_RS20030	0.25	+0.5