Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS16720

Experiment: R2A with Polymyxin B sulfate 0.016 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.016 mg/ml
4,195,608	-		CA265_RS16710	0.34	-0.3
4,195,710	-		CA265_RS16710	0.45	+1.5
4,195,750	+		CA265_RS16710	0.50	+1.5
4,195,751	-		CA265_RS16710	0.50	+0.6
4,195,773	+		CA265_RS16710	0.52	+0.5
4,195,796	-		CA265_RS16710	0.55	+0.0
4,195,796	-		CA265_RS16710	0.55	-0.3
4,195,860	+		CA265_RS16710	0.62	-0.7
4,195,886	+		CA265_RS16710	0.65	-1.3
4,195,887	-		CA265_RS16710	0.65	-0.2
4,195,887	-		CA265_RS16710	0.65	-0.1
4,195,903	+		CA265_RS16710	0.67	-1.3
4,195,943	+		CA265_RS16710	0.71	-1.1
4,195,959	+		CA265_RS16710	0.73	-0.8
4,195,960	-		CA265_RS16710	0.73	+1.0
4,195,965	+		CA265_RS16710	0.74	-1.4
4,195,965	+		CA265_RS16710	0.74	-0.7
4,195,966	-		CA265_RS16710	0.74	+0.1
4,195,966	-		CA265_RS16710	0.74	-0.1
4,195,966	-		CA265_RS16710	0.74	-0.0
4,195,966	-		CA265_RS16710	0.74	-0.1
4,195,966	-		CA265_RS16710	0.74	-0.2
4,195,966	-		CA265_RS16710	0.74	+1.4
4,195,966	-		CA265_RS16710	0.74	-1.1
4,195,970	-		CA265_RS16710	0.74	+0.5
4,195,970	-		CA265_RS16710	0.74	+0.3
4,196,007	+		CA265_RS16710	0.78	+0.1
4,196,118	+				-1.2
4,196,120	+				-0.7
4,196,122	+				+0.5
4,196,122	+				-0.5
4,196,175	+				-0.5
4,196,255	+		CA265_RS16715	0.16	-0.8
4,196,256	-		CA265_RS16715	0.16	+0.2
4,196,262	+		CA265_RS16715	0.18	+0.6
4,196,396	+		CA265_RS16715	0.62	-2.5
4,196,436	-		CA265_RS16715	0.75	+0.2
4,196,505	+				-0.7
4,196,506	-				-1.9
4,196,528	-				+0.6
4,196,594	+				-0.7
4,196,594	+				+0.4
4,196,594	+				-0.6
4,196,659	+				+0.5
4,196,669	+				-1.5
4,196,670	-				+0.4
4,196,726	-				-0.1
4,196,806	-		CA265_RS16720	0.13	-1.6
4,197,037	-		CA265_RS16720	0.27	+0.2
4,197,054	+		CA265_RS16720	0.28	+0.6
4,197,076	+		CA265_RS16720	0.30	+0.6
4,197,129	+		CA265_RS16720	0.33	-0.4
4,197,130	-		CA265_RS16720	0.33	+0.6
4,197,155	+		CA265_RS16720	0.35	+0.0
4,197,193	+		CA265_RS16720	0.37	+0.5
4,197,198	-		CA265_RS16720	0.38	-1.1
4,197,198	-		CA265_RS16720	0.38	+0.5
4,197,198	-		CA265_RS16720	0.38	-0.9
4,197,231	+		CA265_RS16720	0.40	-1.0
4,197,231	+		CA265_RS16720	0.40	-0.6
4,197,232	-		CA265_RS16720	0.40	-0.5
4,197,268	-		CA265_RS16720	0.42	-0.1
4,197,268	-		CA265_RS16720	0.42	+1.3
4,197,274	+		CA265_RS16720	0.42	-0.7
4,197,353	-		CA265_RS16720	0.47	-0.3
4,197,353	-		CA265_RS16720	0.47	+0.1
4,197,378	+		CA265_RS16720	0.49	-0.3
4,197,381	+		CA265_RS16720	0.49	-0.3
4,197,383	+		CA265_RS16720	0.49	-0.7
4,197,388	+		CA265_RS16720	0.50	+0.1
4,197,405	+		CA265_RS16720	0.51	-0.6
4,197,406	-		CA265_RS16720	0.51	+0.5
4,197,418	-		CA265_RS16720	0.52	+0.3
4,197,490	-		CA265_RS16720	0.56	+0.7
4,197,636	+		CA265_RS16720	0.65	-0.9
4,197,648	+		CA265_RS16720	0.66	-0.4
4,197,658	+		CA265_RS16720	0.67	-0.1
4,197,658	+		CA265_RS16720	0.67	-1.9
4,197,658	+		CA265_RS16720	0.67	-1.4
4,197,658	+		CA265_RS16720	0.67	+0.3
4,197,659	-		CA265_RS16720	0.67	-0.2
4,197,698	-		CA265_RS16720	0.69	-0.8
4,197,698	-		CA265_RS16720	0.69	-0.7
4,197,850	+		CA265_RS16720	0.79	+0.5
4,197,850	+		CA265_RS16720	0.79	-0.1
4,197,896	-		CA265_RS16720	0.82	-0.0
4,197,898	+		CA265_RS16720	0.82	-1.0
4,197,898	+		CA265_RS16720	0.82	-0.3
4,197,899	-		CA265_RS16720	0.82	-1.1
4,197,899	-		CA265_RS16720	0.82	-1.7
4,197,903	-		CA265_RS16720	0.82	-0.6
4,197,903	-		CA265_RS16720	0.82	-1.4
4,197,937	+		CA265_RS16720	0.85	+1.6
4,198,034	-				+0.7
4,198,130	-				+0.8
4,198,130	-				+1.0
4,198,179	-				+1.2
4,198,187	+				+0.0
4,198,198	+				+0.1
4,198,199	-				-0.5
4,198,199	-				+0.9
4,198,255	-		CA265_RS16725	0.22	-0.2
4,198,328	+		CA265_RS16725	0.47	-0.0
4,198,329	-		CA265_RS16725	0.48	-1.0
4,198,400	-		CA265_RS16725	0.72	-0.3
4,198,402	-		CA265_RS16725	0.73	+0.4
4,198,407	-		CA265_RS16725	0.75	+0.2
4,198,407	-		CA265_RS16725	0.75	-0.1
4,198,407	-		CA265_RS16725	0.75	+0.4
4,198,407	-		CA265_RS16725	0.75	+0.6
4,198,417	-		CA265_RS16725	0.78	+0.6
4,198,463	-				+1.0