Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS16460

Experiment: R2A with Polymyxin B sulfate 0.016 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.016 mg/ml
4,142,073	-				+0.2
4,142,116	+		CA265_RS16455	0.13	-1.6
4,142,117	-		CA265_RS16455	0.13	+1.5
4,142,137	+		CA265_RS16455	0.15	+0.0
4,142,246	-		CA265_RS16455	0.28	+0.8
4,142,372	+		CA265_RS16455	0.42	+0.2
4,142,399	-		CA265_RS16455	0.45	-2.1
4,142,441	+		CA265_RS16455	0.50	+0.7
4,142,441	+		CA265_RS16455	0.50	+1.2
4,142,441	+		CA265_RS16455	0.50	+0.2
4,142,442	-		CA265_RS16455	0.50	+0.1
4,142,444	-		CA265_RS16455	0.50	+0.2
4,142,486	-		CA265_RS16455	0.55	+0.9
4,142,509	+		CA265_RS16455	0.57	+0.7
4,142,559	+		CA265_RS16455	0.63	+0.8
4,142,559	+		CA265_RS16455	0.63	+0.3
4,142,559	+		CA265_RS16455	0.63	+0.4
4,142,571	+		CA265_RS16455	0.64	-0.3
4,142,623	-		CA265_RS16455	0.70	+0.3
4,142,651	-		CA265_RS16455	0.73	-1.2
4,142,655	-		CA265_RS16455	0.74	+0.8
4,142,665	+		CA265_RS16455	0.75	-0.3
4,142,718	+		CA265_RS16455	0.81	+0.1
4,142,748	+		CA265_RS16455	0.84	+1.8
4,142,749	+		CA265_RS16455	0.84	-0.4
4,142,750	-		CA265_RS16455	0.85	-0.2
4,142,761	-		CA265_RS16455	0.86	+0.3
4,142,761	-		CA265_RS16455	0.86	+0.3
4,142,815	+				+0.2
4,142,815	+				-1.1
4,142,880	+				+2.8
4,142,902	+				+0.8
4,142,931	+				+0.6
4,142,955	+				+0.4
4,142,955	+				+0.4
4,143,003	+				+0.1
4,143,027	-		CA265_RS16460	0.11	-1.0
4,143,027	-		CA265_RS16460	0.11	-0.1
4,143,029	-		CA265_RS16460	0.12	+1.3
4,143,076	-		CA265_RS16460	0.18	-0.2
4,143,094	+		CA265_RS16460	0.20	+1.6
4,143,110	+		CA265_RS16460	0.22	+1.0
4,143,110	+		CA265_RS16460	0.22	+0.5
4,143,111	-		CA265_RS16460	0.22	+0.5
4,143,172	+		CA265_RS16460	0.30	-0.1
4,143,232	+		CA265_RS16460	0.37	+0.1
4,143,285	+		CA265_RS16460	0.44	+0.5
4,143,286	-		CA265_RS16460	0.44	+0.2
4,143,289	-		CA265_RS16460	0.44	+0.4
4,143,350	-		CA265_RS16460	0.52	+0.3
4,143,372	+		CA265_RS16460	0.55	+0.4
4,143,373	-		CA265_RS16460	0.55	-1.4
4,143,390	+		CA265_RS16460	0.57	+0.6
4,143,390	+		CA265_RS16460	0.57	+0.9
4,143,392	+		CA265_RS16460	0.57	+1.0
4,143,392	+		CA265_RS16460	0.57	-0.0
4,143,393	-		CA265_RS16460	0.57	+0.2
4,143,394	+		CA265_RS16460	0.57	+0.6
4,143,395	-		CA265_RS16460	0.57	+0.6
4,143,445	-		CA265_RS16460	0.64	-0.3
4,143,499	+		CA265_RS16460	0.70	+0.1
4,143,521	+		CA265_RS16460	0.73	+1.2
4,143,522	-		CA265_RS16460	0.73	+0.2
4,143,529	-		CA265_RS16460	0.74	-0.5
4,143,549	+		CA265_RS16460	0.77	+0.1
4,143,648	+		CA265_RS16460	0.89	+0.2
4,143,653	-		CA265_RS16460	0.90	-0.2
4,143,706	-				-0.6
4,143,725	+				-0.6
4,143,726	-				+2.5
4,143,763	+				-0.0
4,143,764	-				+0.3
4,143,764	-				-0.8
4,143,771	+				-0.1
4,143,834	-				+0.7
4,143,834	-				-1.4
4,143,838	-				+0.9
4,143,914	+				+0.3
4,143,917	+				-0.2
4,143,960	+				-0.3
4,143,988	+				+0.3
4,143,993	-				-0.3
4,144,059	-				+0.5
4,144,201	+		CA265_RS16465	0.16	-1.2
4,144,202	-		CA265_RS16465	0.16	-0.5
4,144,209	+		CA265_RS16465	0.16	+0.7
4,144,273	-		CA265_RS16465	0.20	+0.7
4,144,273	-		CA265_RS16465	0.20	-1.2
4,144,278	+		CA265_RS16465	0.20	+0.2
4,144,278	+		CA265_RS16465	0.20	-0.7
4,144,279	-		CA265_RS16465	0.20	+0.2
4,144,311	-		CA265_RS16465	0.22	+0.3
4,144,311	-		CA265_RS16465	0.22	+0.3
4,144,314	+		CA265_RS16465	0.22	+0.2
4,144,314	+		CA265_RS16465	0.22	+0.7
4,144,379	-		CA265_RS16465	0.26	+0.6
4,144,383	+		CA265_RS16465	0.26	-0.2
4,144,384	-		CA265_RS16465	0.26	-0.8
4,144,444	-		CA265_RS16465	0.29	+0.4
4,144,444	-		CA265_RS16465	0.29	-1.6
4,144,447	+		CA265_RS16465	0.29	+0.1
4,144,448	-		CA265_RS16465	0.29	-0.6
4,144,490	-		CA265_RS16465	0.32	-0.4
4,144,519	-		CA265_RS16465	0.33	-0.2
4,144,519	-		CA265_RS16465	0.33	+1.3
4,144,548	+		CA265_RS16465	0.35	+2.0
4,144,578	+		CA265_RS16465	0.36	+1.8
4,144,581	-		CA265_RS16465	0.37	-0.2
4,144,694	-		CA265_RS16465	0.43	+0.8