Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04360

Experiment: R2A with Polymyxin B sulfate 0.016 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.016 mg/ml
1,045,973	-		CA265_RS04350	0.64	+1.1
1,045,983	+		CA265_RS04350	0.66	-0.6
1,046,027	+		CA265_RS04350	0.75	+0.1
1,046,067	-		CA265_RS04350	0.83	+0.5
1,046,069	-		CA265_RS04350	0.84	+0.9
1,046,069	-		CA265_RS04350	0.84	+1.5
1,046,080	+		CA265_RS04350	0.86	-0.7
1,046,080	+		CA265_RS04350	0.86	-0.3
1,046,081	-		CA265_RS04350	0.86	+0.0
1,046,112	-				+1.2
1,046,145	+				+0.1
1,046,243	-		CA265_RS04355	0.15	-0.4
1,046,264	+		CA265_RS04355	0.19	-0.5
1,046,264	+		CA265_RS04355	0.19	+1.3
1,046,269	+		CA265_RS04355	0.20	-0.4
1,046,320	+		CA265_RS04355	0.28	-1.4
1,046,321	-		CA265_RS04355	0.28	+1.0
1,046,387	-		CA265_RS04355	0.39	+0.6
1,046,395	-		CA265_RS04355	0.40	+1.3
1,046,455	-		CA265_RS04355	0.50	+0.4
1,046,507	+		CA265_RS04355	0.59	-0.6
1,046,575	+		CA265_RS04355	0.70	-1.1
1,046,580	+		CA265_RS04355	0.71	+0.1
1,046,587	+		CA265_RS04355	0.72	-0.4
1,046,759	+				+0.3
1,046,760	-				+0.1
1,046,766	-				+1.3
1,046,925	+				+0.4
1,046,968	-				+0.8
1,046,991	+				-0.2
1,046,991	+				+0.8
1,046,992	-				+1.3
1,046,992	-				+0.6
1,046,994	-				+1.0
1,046,994	-				+0.2
1,047,058	-				+0.7
1,047,166	+		CA265_RS04360	0.16	+0.3
1,047,167	-		CA265_RS04360	0.16	+1.7
1,047,167	-		CA265_RS04360	0.16	+0.8
1,047,168	+		CA265_RS04360	0.16	+0.7
1,047,168	+		CA265_RS04360	0.16	+0.3
1,047,169	-		CA265_RS04360	0.16	+1.1
1,047,275	-		CA265_RS04360	0.25	+0.6
1,047,370	-		CA265_RS04360	0.32	+0.7
1,047,374	+		CA265_RS04360	0.32	+0.2
1,047,374	+		CA265_RS04360	0.32	+1.1
1,047,374	+		CA265_RS04360	0.32	+0.9
1,047,402	+		CA265_RS04360	0.34	+0.9
1,047,403	-		CA265_RS04360	0.34	+1.6
1,047,429	+		CA265_RS04360	0.36	+0.2
1,047,449	+		CA265_RS04360	0.38	+0.8
1,047,456	-		CA265_RS04360	0.39	+0.9
1,047,456	-		CA265_RS04360	0.39	+0.7
1,047,456	-		CA265_RS04360	0.39	+1.3
1,047,509	+		CA265_RS04360	0.43	-0.0
1,047,581	-		CA265_RS04360	0.48	+0.4
1,047,611	-		CA265_RS04360	0.51	+0.6
1,047,616	-		CA265_RS04360	0.51	+1.0
1,047,715	-		CA265_RS04360	0.59	+0.8
1,047,736	-		CA265_RS04360	0.60	+0.6
1,047,821	-		CA265_RS04360	0.67	+0.9
1,047,860	+		CA265_RS04360	0.70	+0.3
1,047,861	-		CA265_RS04360	0.70	+0.6
1,047,865	+		CA265_RS04360	0.70	+0.7
1,047,865	+		CA265_RS04360	0.70	-0.5
1,047,884	+		CA265_RS04360	0.72	+0.8
1,047,957	+		CA265_RS04360	0.77	+0.5
1,048,045	+		CA265_RS04360	0.84	+0.6
1,048,046	-		CA265_RS04360	0.84	-1.9
1,048,046	-		CA265_RS04360	0.84	+0.7
1,048,046	-		CA265_RS04360	0.84	+1.1
1,048,098	+		CA265_RS04360	0.88	+0.8
1,048,099	-		CA265_RS04360	0.88	+0.4
1,048,099	-		CA265_RS04360	0.88	+1.1
1,048,140	-				+0.6
1,048,151	+				+0.1
1,048,316	+				+0.5
1,048,316	+				+0.1
1,048,316	+				-0.2
1,048,333	-				-0.1
1,048,381	+				-0.4
1,048,396	+				-0.2
1,048,468	+		CA265_RS04365	0.25	-0.2
1,048,468	+		CA265_RS04365	0.25	+0.0
1,048,577	-		CA265_RS04365	0.66	-0.4
1,048,605	-		CA265_RS04365	0.77	+0.6
1,048,607	-		CA265_RS04365	0.78	-0.4
1,048,609	-		CA265_RS04365	0.78	-0.4
1,048,615	-		CA265_RS04365	0.81	-0.1
1,048,630	+		CA265_RS04365	0.86	+0.3
1,048,743	+				-1.1
1,048,744	-				-0.0
1,048,793	+				-0.9
1,048,950	+		CA265_RS04370	0.21	+0.0
1,048,978	+		CA265_RS04370	0.24	+0.1
1,049,053	+		CA265_RS04370	0.31	+0.1
1,049,053	+		CA265_RS04370	0.31	+0.1
1,049,053	+		CA265_RS04370	0.31	-0.2
1,049,127	+		CA265_RS04370	0.37	+1.0
1,049,135	+		CA265_RS04370	0.38	-0.9
1,049,135	+		CA265_RS04370	0.38	+0.7
1,049,135	+		CA265_RS04370	0.38	-0.2
1,049,136	-		CA265_RS04370	0.38	+0.4
1,049,136	-		CA265_RS04370	0.38	-0.7
1,049,179	-		CA265_RS04370	0.42	+1.1
1,049,209	+		CA265_RS04370	0.45	+0.6