Experiment: R2A with Polymyxin B sulfate 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS04015 and CA265_RS04020 overlap by 1 nucleotides CA265_RS04020 and CA265_RS04025 are separated by 275 nucleotides
CA265_RS04015: CA265_RS04015 - ABC transporter ATP-binding protein, at 959,740 to 961,941
_RS04015
CA265_RS04020: CA265_RS04020 - hypothetical protein, at 961,941 to 963,233
_RS04020
CA265_RS04025: CA265_RS04025 - glycoside hydrolase family 2, at 963,509 to 966,673
_RS04025
Position (kb) 961
962
963
964 Strain fitness (log2 ratio) -2
-1
0
1
2 at 960.969 kb on + strand, within CA265_RS04015 at 960.971 kb on + strand, within CA265_RS04015 at 960.971 kb on + strand, within CA265_RS04015 at 960.993 kb on + strand, within CA265_RS04015 at 961.004 kb on + strand, within CA265_RS04015 at 961.005 kb on - strand, within CA265_RS04015 at 961.045 kb on + strand, within CA265_RS04015 at 961.046 kb on - strand, within CA265_RS04015 at 961.046 kb on - strand, within CA265_RS04015 at 961.061 kb on + strand, within CA265_RS04015 at 961.061 kb on + strand, within CA265_RS04015 at 961.061 kb on + strand, within CA265_RS04015 at 961.082 kb on + strand, within CA265_RS04015 at 961.082 kb on + strand, within CA265_RS04015 at 961.095 kb on - strand, within CA265_RS04015 at 961.125 kb on - strand, within CA265_RS04015 at 961.212 kb on + strand, within CA265_RS04015 at 961.263 kb on - strand, within CA265_RS04015 at 961.283 kb on + strand, within CA265_RS04015 at 961.333 kb on - strand, within CA265_RS04015 at 961.333 kb on - strand, within CA265_RS04015 at 961.352 kb on + strand, within CA265_RS04015 at 961.353 kb on - strand, within CA265_RS04015 at 961.353 kb on - strand, within CA265_RS04015 at 961.389 kb on + strand, within CA265_RS04015 at 961.423 kb on + strand, within CA265_RS04015 at 961.498 kb on - strand, within CA265_RS04015 at 961.553 kb on + strand, within CA265_RS04015 at 961.578 kb on + strand, within CA265_RS04015 at 961.584 kb on - strand, within CA265_RS04015 at 961.672 kb on + strand, within CA265_RS04015 at 961.719 kb on - strand, within CA265_RS04015 at 961.740 kb on - strand at 961.785 kb on - strand at 961.807 kb on - strand at 961.807 kb on - strand at 961.829 kb on + strand at 961.830 kb on - strand at 961.836 kb on - strand at 961.856 kb on + strand at 961.867 kb on - strand at 961.974 kb on + strand at 961.981 kb on + strand at 962.003 kb on + strand at 962.053 kb on + strand at 962.140 kb on + strand, within CA265_RS04020 at 962.141 kb on - strand, within CA265_RS04020 at 962.160 kb on + strand, within CA265_RS04020 at 962.161 kb on - strand, within CA265_RS04020 at 962.162 kb on + strand, within CA265_RS04020 at 962.212 kb on - strand, within CA265_RS04020 at 962.380 kb on - strand, within CA265_RS04020 at 962.405 kb on - strand, within CA265_RS04020 at 962.409 kb on + strand, within CA265_RS04020 at 962.411 kb on + strand, within CA265_RS04020 at 962.411 kb on + strand, within CA265_RS04020 at 962.411 kb on + strand, within CA265_RS04020 at 962.412 kb on - strand, within CA265_RS04020 at 962.413 kb on + strand, within CA265_RS04020 at 962.413 kb on + strand, within CA265_RS04020 at 962.437 kb on - strand, within CA265_RS04020 at 962.459 kb on - strand, within CA265_RS04020 at 962.473 kb on + strand, within CA265_RS04020 at 962.605 kb on - strand, within CA265_RS04020 at 962.607 kb on - strand, within CA265_RS04020 at 962.625 kb on + strand, within CA265_RS04020 at 962.626 kb on - strand, within CA265_RS04020 at 962.637 kb on - strand, within CA265_RS04020 at 962.671 kb on + strand, within CA265_RS04020 at 962.726 kb on + strand, within CA265_RS04020 at 962.727 kb on - strand, within CA265_RS04020 at 962.772 kb on - strand, within CA265_RS04020 at 962.772 kb on - strand, within CA265_RS04020 at 962.774 kb on - strand, within CA265_RS04020 at 962.838 kb on - strand, within CA265_RS04020 at 962.873 kb on - strand, within CA265_RS04020 at 962.935 kb on - strand, within CA265_RS04020 at 962.948 kb on + strand, within CA265_RS04020 at 963.042 kb on + strand, within CA265_RS04020 at 963.043 kb on - strand, within CA265_RS04020 at 963.080 kb on - strand, within CA265_RS04020 at 963.263 kb on + strand at 963.264 kb on - strand at 963.465 kb on - strand at 963.465 kb on - strand at 963.487 kb on + strand at 963.498 kb on - strand at 963.500 kb on - strand at 963.543 kb on + strand at 963.670 kb on + strand at 963.757 kb on + strand at 963.830 kb on - strand, within CA265_RS04025 at 963.855 kb on + strand, within CA265_RS04025 at 963.888 kb on + strand, within CA265_RS04025 at 963.931 kb on + strand, within CA265_RS04025 at 963.931 kb on + strand, within CA265_RS04025 at 963.932 kb on - strand, within CA265_RS04025 at 964.008 kb on + strand, within CA265_RS04025 at 964.008 kb on + strand, within CA265_RS04025 at 964.009 kb on - strand, within CA265_RS04025 at 964.063 kb on + strand, within CA265_RS04025 at 964.063 kb on + strand, within CA265_RS04025 at 964.064 kb on - strand, within CA265_RS04025 at 964.073 kb on - strand, within CA265_RS04025 at 964.076 kb on - strand, within CA265_RS04025 at 964.076 kb on - strand, within CA265_RS04025 at 964.107 kb on - strand, within CA265_RS04025 at 964.145 kb on + strand, within CA265_RS04025 at 964.146 kb on - strand, within CA265_RS04025 at 964.146 kb on - strand, within CA265_RS04025 at 964.167 kb on - strand, within CA265_RS04025 at 964.204 kb on - strand, within CA265_RS04025 at 964.204 kb on - strand, within CA265_RS04025 at 964.218 kb on - strand, within CA265_RS04025 at 964.221 kb on + strand, within CA265_RS04025
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.016 mg/ml remove 960,969 + CA265_RS04015 0.56 +1.8 960,971 + CA265_RS04015 0.56 +0.7 960,971 + CA265_RS04015 0.56 +0.6 960,993 + CA265_RS04015 0.57 +0.7 961,004 + CA265_RS04015 0.57 +0.6 961,005 - CA265_RS04015 0.57 -0.2 961,045 + CA265_RS04015 0.59 +0.7 961,046 - CA265_RS04015 0.59 +0.2 961,046 - CA265_RS04015 0.59 +0.3 961,061 + CA265_RS04015 0.60 -0.1 961,061 + CA265_RS04015 0.60 -0.5 961,061 + CA265_RS04015 0.60 +0.7 961,082 + CA265_RS04015 0.61 +0.2 961,082 + CA265_RS04015 0.61 -0.0 961,095 - CA265_RS04015 0.62 -0.1 961,125 - CA265_RS04015 0.63 -0.2 961,212 + CA265_RS04015 0.67 +0.3 961,263 - CA265_RS04015 0.69 +0.6 961,283 + CA265_RS04015 0.70 +0.0 961,333 - CA265_RS04015 0.72 +0.3 961,333 - CA265_RS04015 0.72 +1.1 961,352 + CA265_RS04015 0.73 +1.1 961,353 - CA265_RS04015 0.73 +0.6 961,353 - CA265_RS04015 0.73 +0.6 961,389 + CA265_RS04015 0.75 +1.4 961,423 + CA265_RS04015 0.76 +1.5 961,498 - CA265_RS04015 0.80 +0.9 961,553 + CA265_RS04015 0.82 +0.1 961,578 + CA265_RS04015 0.83 -0.2 961,584 - CA265_RS04015 0.84 +0.6 961,672 + CA265_RS04015 0.88 +1.1 961,719 - CA265_RS04015 0.90 +0.3 961,740 - +0.7 961,785 - +1.1 961,807 - -0.1 961,807 - +0.9 961,829 + -0.5 961,830 - +0.5 961,836 - -2.0 961,856 + +0.7 961,867 - +0.4 961,974 + +1.8 961,981 + +0.4 962,003 + +0.9 962,053 + +0.7 962,140 + CA265_RS04020 0.15 +0.4 962,141 - CA265_RS04020 0.15 +0.4 962,160 + CA265_RS04020 0.17 +1.3 962,161 - CA265_RS04020 0.17 +0.1 962,162 + CA265_RS04020 0.17 -0.2 962,212 - CA265_RS04020 0.21 +1.5 962,380 - CA265_RS04020 0.34 +0.5 962,405 - CA265_RS04020 0.36 +1.1 962,409 + CA265_RS04020 0.36 +0.5 962,411 + CA265_RS04020 0.36 +0.7 962,411 + CA265_RS04020 0.36 +0.8 962,411 + CA265_RS04020 0.36 -0.2 962,412 - CA265_RS04020 0.36 -0.1 962,413 + CA265_RS04020 0.37 +0.8 962,413 + CA265_RS04020 0.37 +0.5 962,437 - CA265_RS04020 0.38 +0.1 962,459 - CA265_RS04020 0.40 +1.8 962,473 + CA265_RS04020 0.41 +0.4 962,605 - CA265_RS04020 0.51 +0.1 962,607 - CA265_RS04020 0.52 -1.0 962,625 + CA265_RS04020 0.53 +0.0 962,626 - CA265_RS04020 0.53 +1.2 962,637 - CA265_RS04020 0.54 +0.5 962,671 + CA265_RS04020 0.56 +0.9 962,726 + CA265_RS04020 0.61 +0.7 962,727 - CA265_RS04020 0.61 +0.9 962,772 - CA265_RS04020 0.64 +0.1 962,772 - CA265_RS04020 0.64 -0.1 962,774 - CA265_RS04020 0.64 -2.0 962,838 - CA265_RS04020 0.69 +0.4 962,873 - CA265_RS04020 0.72 +0.2 962,935 - CA265_RS04020 0.77 +1.1 962,948 + CA265_RS04020 0.78 +0.9 963,042 + CA265_RS04020 0.85 +0.0 963,043 - CA265_RS04020 0.85 +0.2 963,080 - CA265_RS04020 0.88 +0.4 963,263 + +1.7 963,264 - +0.9 963,465 - -0.4 963,465 - -0.4 963,487 + -0.5 963,498 - -0.8 963,500 - -1.7 963,543 + +0.5 963,670 + +0.5 963,757 + +0.1 963,830 - CA265_RS04025 0.10 -0.1 963,855 + CA265_RS04025 0.11 -1.5 963,888 + CA265_RS04025 0.12 -0.4 963,931 + CA265_RS04025 0.13 +0.2 963,931 + CA265_RS04025 0.13 -0.6 963,932 - CA265_RS04025 0.13 -1.2 964,008 + CA265_RS04025 0.16 -0.3 964,008 + CA265_RS04025 0.16 +0.5 964,009 - CA265_RS04025 0.16 +0.1 964,063 + CA265_RS04025 0.18 -0.4 964,063 + CA265_RS04025 0.18 +0.3 964,064 - CA265_RS04025 0.18 -0.2 964,073 - CA265_RS04025 0.18 -0.4 964,076 - CA265_RS04025 0.18 -1.1 964,076 - CA265_RS04025 0.18 +0.5 964,107 - CA265_RS04025 0.19 -0.1 964,145 + CA265_RS04025 0.20 -0.5 964,146 - CA265_RS04025 0.20 -0.1 964,146 - CA265_RS04025 0.20 -0.4 964,167 - CA265_RS04025 0.21 +0.0 964,204 - CA265_RS04025 0.22 +1.0 964,204 - CA265_RS04025 0.22 +0.2 964,218 - CA265_RS04025 0.22 -0.7 964,221 + CA265_RS04025 0.22 -0.2
Or see this region's nucleotide sequence