Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS18755

Experiment: L-Glutamine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE51_RS18745 and ABIE51_RS18750 are separated by 74 nucleotidesABIE51_RS18750 and ABIE51_RS18755 are separated by 183 nucleotidesABIE51_RS18755 and ABIE51_RS18760 are separated by 312 nucleotides ABIE51_RS18745: ABIE51_RS18745 - hypothetical protein, at 4,076,985 to 4,078,172 _RS18745 ABIE51_RS18750: ABIE51_RS18750 - lysozyme inhibitor LprI family protein, at 4,078,247 to 4,078,564 _RS18750 ABIE51_RS18755: ABIE51_RS18755 - hypothetical protein, at 4,078,748 to 4,079,224 _RS18755 ABIE51_RS18760: ABIE51_RS18760 - hypothetical protein, at 4,079,537 to 4,079,779 _RS18760 Position (kb) 4078 4079 4080Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4077.772 kb on - strand, within ABIE51_RS18745at 4077.867 kb on + strand, within ABIE51_RS18745at 4077.867 kb on + strand, within ABIE51_RS18745at 4077.867 kb on + strand, within ABIE51_RS18745at 4077.867 kb on + strand, within ABIE51_RS18745at 4077.867 kb on + strand, within ABIE51_RS18745at 4077.889 kb on + strand, within ABIE51_RS18745at 4077.914 kb on + strand, within ABIE51_RS18745at 4077.914 kb on + strand, within ABIE51_RS18745at 4077.914 kb on + strand, within ABIE51_RS18745at 4078.114 kb on + strandat 4078.115 kb on - strandat 4078.115 kb on - strandat 4078.115 kb on - strandat 4078.134 kb on + strandat 4078.134 kb on + strandat 4078.134 kb on + strandat 4078.134 kb on + strandat 4078.134 kb on + strandat 4078.134 kb on + strandat 4078.134 kb on + strandat 4078.135 kb on - strandat 4078.220 kb on - strandat 4078.268 kb on + strandat 4078.268 kb on + strandat 4078.322 kb on + strand, within ABIE51_RS18750at 4078.322 kb on + strand, within ABIE51_RS18750at 4078.322 kb on + strand, within ABIE51_RS18750at 4078.323 kb on - strand, within ABIE51_RS18750at 4078.356 kb on - strand, within ABIE51_RS18750at 4078.383 kb on + strand, within ABIE51_RS18750at 4078.384 kb on - strand, within ABIE51_RS18750at 4078.384 kb on - strand, within ABIE51_RS18750at 4078.535 kb on + strandat 4078.535 kb on + strandat 4078.535 kb on + strandat 4078.536 kb on - strandat 4078.536 kb on - strandat 4078.562 kb on + strandat 4078.562 kb on + strandat 4078.575 kb on + strandat 4078.575 kb on + strandat 4078.743 kb on + strandat 4078.743 kb on + strandat 4078.743 kb on + strandat 4078.743 kb on + strandat 4078.744 kb on - strandat 4078.744 kb on - strandat 4078.744 kb on - strandat 4078.744 kb on - strandat 4078.744 kb on - strandat 4079.102 kb on + strand, within ABIE51_RS18755at 4079.103 kb on - strand, within ABIE51_RS18755at 4079.118 kb on + strand, within ABIE51_RS18755at 4079.539 kb on - strandat 4079.539 kb on - strandat 4079.539 kb on - strandat 4079.580 kb on + strand, within ABIE51_RS18760at 4079.581 kb on - strand, within ABIE51_RS18760at 4079.581 kb on - strand, within ABIE51_RS18760at 4079.856 kb on + strandat 4079.856 kb on + strandat 4079.856 kb on + strandat 4079.856 kb on + strandat 4079.870 kb on + strandat 4079.870 kb on + strandat 4079.871 kb on - strandat 4079.892 kb on + strandat 4079.892 kb on + strandat 4079.892 kb on + strandat 4079.892 kb on + strandat 4079.892 kb on + strandat 4079.892 kb on + strandat 4079.893 kb on - strandat 4079.948 kb on + strandat 4079.984 kb on + strandat 4079.984 kb on + strandat 4079.985 kb on - strandat 4080.057 kb on + strandat 4080.057 kb on + strandat 4080.057 kb on + strandat 4080.057 kb on + strandat 4080.058 kb on - strandat 4080.058 kb on - strandat 4080.058 kb on - strandat 4080.067 kb on + strandat 4080.067 kb on + strandat 4080.083 kb on + strandat 4080.083 kb on + strandat 4080.083 kb on + strandat 4080.083 kb on + strandat 4080.083 kb on + strandat 4080.083 kb on + strandat 4080.083 kb on + strandat 4080.083 kb on + strandat 4080.083 kb on + strandat 4080.083 kb on + strandat 4080.083 kb on + strandat 4080.083 kb on + strandat 4080.083 kb on + strandat 4080.083 kb on + strandat 4080.083 kb on + strandat 4080.083 kb on + strandat 4080.084 kb on - strandat 4080.084 kb on - strandat 4080.084 kb on - strandat 4080.084 kb on - strandat 4080.084 kb on - strandat 4080.084 kb on - strandat 4080.084 kb on - strandat 4080.084 kb on - strandat 4080.084 kb on - strandat 4080.087 kb on + strandat 4080.087 kb on + strandat 4080.087 kb on + strandat 4080.087 kb on + strandat 4080.087 kb on + strandat 4080.087 kb on + strandat 4080.087 kb on + strandat 4080.087 kb on + strandat 4080.087 kb on + strandat 4080.087 kb on + strandat 4080.088 kb on - strandat 4080.088 kb on - strandat 4080.088 kb on - strandat 4080.088 kb on - strandat 4080.088 kb on - strandat 4080.088 kb on - strandat 4080.088 kb on - strandat 4080.088 kb on - strandat 4080.088 kb on - strandat 4080.088 kb on - strandat 4080.108 kb on + strandat 4080.109 kb on - strandat 4080.160 kb on + strandat 4080.160 kb on + strandat 4080.160 kb on + strandat 4080.161 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
remove
4,077,772 - ABIE51_RS18745 0.66 -0.6
4,077,867 + ABIE51_RS18745 0.74 -1.6
4,077,867 + ABIE51_RS18745 0.74 +0.0
4,077,867 + ABIE51_RS18745 0.74 -0.3
4,077,867 + ABIE51_RS18745 0.74 -0.0
4,077,867 + ABIE51_RS18745 0.74 +0.1
4,077,889 + ABIE51_RS18745 0.76 -0.8
4,077,914 + ABIE51_RS18745 0.78 -0.2
4,077,914 + ABIE51_RS18745 0.78 -0.2
4,077,914 + ABIE51_RS18745 0.78 +0.1
4,078,114 + -0.5
4,078,115 - -0.2
4,078,115 - -0.1
4,078,115 - +0.8
4,078,134 + -0.1
4,078,134 + -0.8
4,078,134 + +0.2
4,078,134 + +0.1
4,078,134 + +0.2
4,078,134 + -0.2
4,078,134 + -1.0
4,078,135 - +0.3
4,078,220 - -0.0
4,078,268 + +0.7
4,078,268 + -0.4
4,078,322 + ABIE51_RS18750 0.24 +0.1
4,078,322 + ABIE51_RS18750 0.24 +2.0
4,078,322 + ABIE51_RS18750 0.24 -0.8
4,078,323 - ABIE51_RS18750 0.24 -1.3
4,078,356 - ABIE51_RS18750 0.34 -0.5
4,078,383 + ABIE51_RS18750 0.43 -0.3
4,078,384 - ABIE51_RS18750 0.43 -0.3
4,078,384 - ABIE51_RS18750 0.43 -0.2
4,078,535 + +0.3
4,078,535 + +0.6
4,078,535 + -1.2
4,078,536 - +0.2
4,078,536 - +1.0
4,078,562 + +0.0
4,078,562 + -0.6
4,078,575 + -0.6
4,078,575 + +0.5
4,078,743 + -0.8
4,078,743 + +0.2
4,078,743 + +1.0
4,078,743 + -1.1
4,078,744 - +0.3
4,078,744 - -0.8
4,078,744 - +0.3
4,078,744 - +1.6
4,078,744 - +0.0
4,079,102 + ABIE51_RS18755 0.74 +1.6
4,079,103 - ABIE51_RS18755 0.74 -0.1
4,079,118 + ABIE51_RS18755 0.78 +0.1
4,079,539 - +0.6
4,079,539 - -0.2
4,079,539 - +0.2
4,079,580 + ABIE51_RS18760 0.18 -0.8
4,079,581 - ABIE51_RS18760 0.18 -0.5
4,079,581 - ABIE51_RS18760 0.18 +1.7
4,079,856 + +0.7
4,079,856 + +1.6
4,079,856 + +1.0
4,079,856 + +0.8
4,079,870 + -3.4
4,079,870 + +0.5
4,079,871 - -1.1
4,079,892 + +2.1
4,079,892 + -0.4
4,079,892 + +0.1
4,079,892 + +0.2
4,079,892 + +0.1
4,079,892 + +0.9
4,079,893 - +1.1
4,079,948 + +0.5
4,079,984 + -0.7
4,079,984 + -0.1
4,079,985 - -0.6
4,080,057 + +0.0
4,080,057 + +0.1
4,080,057 + +1.3
4,080,057 + -0.1
4,080,058 - -0.6
4,080,058 - -1.2
4,080,058 - +0.1
4,080,067 + +0.6
4,080,067 + +0.9
4,080,083 + +0.1
4,080,083 + -0.3
4,080,083 + +0.5
4,080,083 + +0.0
4,080,083 + +0.8
4,080,083 + +0.2
4,080,083 + +1.7
4,080,083 + -0.4
4,080,083 + +0.6
4,080,083 + -2.6
4,080,083 + +0.5
4,080,083 + -1.4
4,080,083 + -0.4
4,080,083 + -0.1
4,080,083 + -0.4
4,080,083 + +0.1
4,080,084 - +0.2
4,080,084 - +0.9
4,080,084 - +0.3
4,080,084 - -1.3
4,080,084 - -0.8
4,080,084 - +1.2
4,080,084 - -0.3
4,080,084 - -0.8
4,080,084 - -0.5
4,080,087 + +0.2
4,080,087 + +0.5
4,080,087 + -0.4
4,080,087 + +0.8
4,080,087 + -0.0
4,080,087 + +0.5
4,080,087 + -0.2
4,080,087 + +0.8
4,080,087 + +0.2
4,080,087 + -0.1
4,080,088 - -0.0
4,080,088 - +0.5
4,080,088 - +0.6
4,080,088 - +0.5
4,080,088 - -2.7
4,080,088 - +2.3
4,080,088 - -0.1
4,080,088 - +0.3
4,080,088 - +0.2
4,080,088 - -2.8
4,080,108 + +0.9
4,080,109 - -0.6
4,080,160 + -0.2
4,080,160 + +1.0
4,080,160 + -0.2
4,080,161 - +0.4

Or see this region's nucleotide sequence