Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS08065

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS08060 and ABIE51_RS08065 are separated by 144 nucleotidesABIE51_RS08065 and ABIE51_RS08070 are separated by 0 nucleotidesABIE51_RS08070 and ABIE51_RS08075 are separated by 17 nucleotides ABIE51_RS08060: ABIE51_RS08060 - N-acetylmuramoyl-L-alanine amidase, at 1,714,044 to 1,715,723 _RS08060 ABIE51_RS08065: ABIE51_RS08065 - DNA mismatch repair endonuclease MutL, at 1,715,868 to 1,717,706 _RS08065 ABIE51_RS08070: ABIE51_RS08070 - DUF1684 domain-containing protein, at 1,717,707 to 1,718,651 _RS08070 ABIE51_RS08075: ABIE51_RS08075 - TraB/GumN family protein, at 1,718,669 to 1,719,718 _RS08075 Position (kb) 1715 1716 1717 1718Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1715.662 kb on - strandat 1715.662 kb on - strandat 1715.686 kb on - strandat 1716.197 kb on + strand, within ABIE51_RS08065at 1716.197 kb on + strand, within ABIE51_RS08065at 1716.198 kb on - strand, within ABIE51_RS08065at 1716.536 kb on - strand, within ABIE51_RS08065at 1716.621 kb on + strand, within ABIE51_RS08065at 1716.621 kb on + strand, within ABIE51_RS08065at 1716.621 kb on + strand, within ABIE51_RS08065at 1716.622 kb on - strand, within ABIE51_RS08065at 1716.622 kb on - strand, within ABIE51_RS08065at 1716.622 kb on - strand, within ABIE51_RS08065at 1716.622 kb on - strand, within ABIE51_RS08065at 1716.622 kb on - strand, within ABIE51_RS08065at 1716.627 kb on + strand, within ABIE51_RS08065at 1716.627 kb on + strand, within ABIE51_RS08065at 1716.627 kb on + strand, within ABIE51_RS08065at 1716.627 kb on + strand, within ABIE51_RS08065at 1716.627 kb on + strand, within ABIE51_RS08065at 1716.628 kb on + strand, within ABIE51_RS08065at 1716.628 kb on - strand, within ABIE51_RS08065at 1716.628 kb on - strand, within ABIE51_RS08065at 1716.628 kb on - strand, within ABIE51_RS08065at 1716.628 kb on - strand, within ABIE51_RS08065at 1716.684 kb on + strand, within ABIE51_RS08065at 1716.684 kb on + strand, within ABIE51_RS08065at 1716.685 kb on - strand, within ABIE51_RS08065at 1716.685 kb on - strand, within ABIE51_RS08065at 1716.685 kb on - strand, within ABIE51_RS08065at 1716.720 kb on + strand, within ABIE51_RS08065at 1716.720 kb on + strand, within ABIE51_RS08065at 1716.720 kb on + strand, within ABIE51_RS08065at 1716.720 kb on + strand, within ABIE51_RS08065at 1716.931 kb on - strand, within ABIE51_RS08065at 1716.954 kb on + strand, within ABIE51_RS08065at 1716.954 kb on + strand, within ABIE51_RS08065at 1716.954 kb on + strand, within ABIE51_RS08065at 1716.954 kb on + strand, within ABIE51_RS08065at 1716.954 kb on + strand, within ABIE51_RS08065at 1716.960 kb on + strand, within ABIE51_RS08065at 1716.960 kb on + strand, within ABIE51_RS08065at 1716.960 kb on + strand, within ABIE51_RS08065at 1716.961 kb on - strand, within ABIE51_RS08065at 1716.961 kb on - strand, within ABIE51_RS08065at 1716.961 kb on - strand, within ABIE51_RS08065at 1717.034 kb on - strand, within ABIE51_RS08065at 1717.138 kb on - strand, within ABIE51_RS08065at 1717.164 kb on + strand, within ABIE51_RS08065at 1717.164 kb on + strand, within ABIE51_RS08065at 1717.164 kb on + strand, within ABIE51_RS08065at 1717.164 kb on + strand, within ABIE51_RS08065at 1717.164 kb on + strand, within ABIE51_RS08065at 1717.164 kb on + strand, within ABIE51_RS08065at 1717.164 kb on + strand, within ABIE51_RS08065at 1717.165 kb on - strand, within ABIE51_RS08065at 1717.165 kb on - strand, within ABIE51_RS08065at 1717.165 kb on - strand, within ABIE51_RS08065at 1717.165 kb on - strand, within ABIE51_RS08065at 1717.165 kb on - strand, within ABIE51_RS08065at 1717.165 kb on - strand, within ABIE51_RS08065at 1717.165 kb on - strand, within ABIE51_RS08065at 1717.206 kb on - strand, within ABIE51_RS08065at 1717.932 kb on + strand, within ABIE51_RS08070at 1717.932 kb on + strand, within ABIE51_RS08070at 1717.933 kb on - strand, within ABIE51_RS08070at 1717.933 kb on - strand, within ABIE51_RS08070at 1717.933 kb on - strand, within ABIE51_RS08070at 1717.933 kb on - strand, within ABIE51_RS08070at 1718.176 kb on - strand, within ABIE51_RS08070at 1718.235 kb on + strand, within ABIE51_RS08070at 1718.236 kb on - strand, within ABIE51_RS08070at 1718.327 kb on + strand, within ABIE51_RS08070at 1718.460 kb on + strand, within ABIE51_RS08070at 1718.631 kb on + strandat 1718.631 kb on + strandat 1718.631 kb on + strandat 1718.631 kb on + strandat 1718.631 kb on + strandat 1718.631 kb on + strandat 1718.632 kb on - strandat 1718.632 kb on - strandat 1718.632 kb on - strandat 1718.632 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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1,715,662 - -0.4
1,715,662 - +0.4
1,715,686 - +0.3
1,716,197 + ABIE51_RS08065 0.18 -0.3
1,716,197 + ABIE51_RS08065 0.18 +0.4
1,716,198 - ABIE51_RS08065 0.18 -0.2
1,716,536 - ABIE51_RS08065 0.36 -3.3
1,716,621 + ABIE51_RS08065 0.41 -2.4
1,716,621 + ABIE51_RS08065 0.41 +0.2
1,716,621 + ABIE51_RS08065 0.41 -0.1
1,716,622 - ABIE51_RS08065 0.41 -0.3
1,716,622 - ABIE51_RS08065 0.41 +0.1
1,716,622 - ABIE51_RS08065 0.41 -0.2
1,716,622 - ABIE51_RS08065 0.41 +1.0
1,716,622 - ABIE51_RS08065 0.41 +0.4
1,716,627 + ABIE51_RS08065 0.41 -0.1
1,716,627 + ABIE51_RS08065 0.41 -2.1
1,716,627 + ABIE51_RS08065 0.41 -0.7
1,716,627 + ABIE51_RS08065 0.41 -3.8
1,716,627 + ABIE51_RS08065 0.41 +0.2
1,716,628 + ABIE51_RS08065 0.41 -1.1
1,716,628 - ABIE51_RS08065 0.41 +0.0
1,716,628 - ABIE51_RS08065 0.41 +0.7
1,716,628 - ABIE51_RS08065 0.41 +0.2
1,716,628 - ABIE51_RS08065 0.41 +0.9
1,716,684 + ABIE51_RS08065 0.44 +0.0
1,716,684 + ABIE51_RS08065 0.44 -0.3
1,716,685 - ABIE51_RS08065 0.44 +0.0
1,716,685 - ABIE51_RS08065 0.44 -0.3
1,716,685 - ABIE51_RS08065 0.44 -0.3
1,716,720 + ABIE51_RS08065 0.46 -0.6
1,716,720 + ABIE51_RS08065 0.46 +1.9
1,716,720 + ABIE51_RS08065 0.46 -0.4
1,716,720 + ABIE51_RS08065 0.46 -0.0
1,716,931 - ABIE51_RS08065 0.58 -0.0
1,716,954 + ABIE51_RS08065 0.59 +0.1
1,716,954 + ABIE51_RS08065 0.59 +0.5
1,716,954 + ABIE51_RS08065 0.59 +0.3
1,716,954 + ABIE51_RS08065 0.59 +0.5
1,716,954 + ABIE51_RS08065 0.59 +0.2
1,716,960 + ABIE51_RS08065 0.59 +0.7
1,716,960 + ABIE51_RS08065 0.59 -3.7
1,716,960 + ABIE51_RS08065 0.59 -0.0
1,716,961 - ABIE51_RS08065 0.59 -1.2
1,716,961 - ABIE51_RS08065 0.59 -2.6
1,716,961 - ABIE51_RS08065 0.59 -0.6
1,717,034 - ABIE51_RS08065 0.63 -0.5
1,717,138 - ABIE51_RS08065 0.69 +1.1
1,717,164 + ABIE51_RS08065 0.70 -1.0
1,717,164 + ABIE51_RS08065 0.70 +0.2
1,717,164 + ABIE51_RS08065 0.70 -1.2
1,717,164 + ABIE51_RS08065 0.70 +0.3
1,717,164 + ABIE51_RS08065 0.70 -0.4
1,717,164 + ABIE51_RS08065 0.70 -2.7
1,717,164 + ABIE51_RS08065 0.70 -0.6
1,717,165 - ABIE51_RS08065 0.71 +0.8
1,717,165 - ABIE51_RS08065 0.71 -0.7
1,717,165 - ABIE51_RS08065 0.71 -0.2
1,717,165 - ABIE51_RS08065 0.71 +0.4
1,717,165 - ABIE51_RS08065 0.71 -0.1
1,717,165 - ABIE51_RS08065 0.71 +0.4
1,717,165 - ABIE51_RS08065 0.71 +0.1
1,717,206 - ABIE51_RS08065 0.73 +0.1
1,717,932 + ABIE51_RS08070 0.24 -0.1
1,717,932 + ABIE51_RS08070 0.24 -1.4
1,717,933 - ABIE51_RS08070 0.24 +0.1
1,717,933 - ABIE51_RS08070 0.24 -1.4
1,717,933 - ABIE51_RS08070 0.24 -1.7
1,717,933 - ABIE51_RS08070 0.24 +0.2
1,718,176 - ABIE51_RS08070 0.50 -0.3
1,718,235 + ABIE51_RS08070 0.56 -1.0
1,718,236 - ABIE51_RS08070 0.56 +0.6
1,718,327 + ABIE51_RS08070 0.66 +0.4
1,718,460 + ABIE51_RS08070 0.80 +0.5
1,718,631 + -0.9
1,718,631 + +0.2
1,718,631 + +0.1
1,718,631 + +0.3
1,718,631 + +0.5
1,718,631 + -0.5
1,718,632 - +0.4
1,718,632 - -0.5
1,718,632 - +0.7
1,718,632 - +0.1

Or see this region's nucleotide sequence