Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS06865 and ABIE51_RS06870 are separated by 53 nucleotides ABIE51_RS06870 and ABIE51_RS06875 overlap by 11 nucleotides ABIE51_RS06875 and ABIE51_RS06880 overlap by 11 nucleotides
ABIE51_RS06865: ABIE51_RS06865 - tetratricopeptide repeat protein, at 1,476,318 to 1,477,613
_RS06865
ABIE51_RS06870: ABIE51_RS06870 - hypothetical protein, at 1,477,667 to 1,478,077
_RS06870
ABIE51_RS06875: ABIE51_RS06875 - ribonuclease HII, at 1,478,067 to 1,478,744
_RS06875
ABIE51_RS06880: ABIE51_RS06880 - lipid-A-disaccharide synthase, at 1,478,734 to 1,479,936
_RS06880
Position (kb)
1477
1478
1479 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1476.750 kb on - strand, within ABIE51_RS06865 at 1476.756 kb on + strand, within ABIE51_RS06865 at 1476.756 kb on + strand, within ABIE51_RS06865 at 1476.756 kb on + strand, within ABIE51_RS06865 at 1476.759 kb on + strand, within ABIE51_RS06865 at 1476.759 kb on + strand, within ABIE51_RS06865 at 1476.760 kb on - strand, within ABIE51_RS06865 at 1476.858 kb on + strand, within ABIE51_RS06865 at 1476.859 kb on - strand, within ABIE51_RS06865 at 1476.859 kb on - strand, within ABIE51_RS06865 at 1476.859 kb on - strand, within ABIE51_RS06865 at 1476.859 kb on - strand, within ABIE51_RS06865 at 1476.918 kb on + strand, within ABIE51_RS06865 at 1477.066 kb on - strand, within ABIE51_RS06865 at 1477.066 kb on - strand, within ABIE51_RS06865 at 1477.162 kb on + strand, within ABIE51_RS06865 at 1477.162 kb on + strand, within ABIE51_RS06865 at 1477.163 kb on - strand, within ABIE51_RS06865 at 1477.164 kb on + strand, within ABIE51_RS06865 at 1477.165 kb on - strand, within ABIE51_RS06865 at 1477.165 kb on - strand, within ABIE51_RS06865 at 1477.269 kb on + strand, within ABIE51_RS06865 at 1477.270 kb on - strand, within ABIE51_RS06865 at 1477.270 kb on - strand, within ABIE51_RS06865 at 1477.270 kb on - strand, within ABIE51_RS06865 at 1477.299 kb on + strand, within ABIE51_RS06865 at 1477.299 kb on + strand, within ABIE51_RS06865 at 1477.299 kb on + strand, within ABIE51_RS06865 at 1477.350 kb on + strand, within ABIE51_RS06865 at 1477.351 kb on - strand, within ABIE51_RS06865 at 1477.351 kb on - strand, within ABIE51_RS06865 at 1477.713 kb on + strand, within ABIE51_RS06870 at 1477.713 kb on + strand, within ABIE51_RS06870 at 1477.714 kb on - strand, within ABIE51_RS06870 at 1477.714 kb on - strand, within ABIE51_RS06870 at 1477.714 kb on - strand, within ABIE51_RS06870 at 1477.714 kb on - strand, within ABIE51_RS06870 at 1477.714 kb on - strand, within ABIE51_RS06870 at 1477.787 kb on + strand, within ABIE51_RS06870 at 1477.788 kb on - strand, within ABIE51_RS06870 at 1477.808 kb on - strand, within ABIE51_RS06870 at 1477.982 kb on + strand, within ABIE51_RS06870 at 1477.982 kb on + strand, within ABIE51_RS06870 at 1477.982 kb on + strand, within ABIE51_RS06870 at 1477.983 kb on - strand, within ABIE51_RS06870 at 1477.983 kb on - strand, within ABIE51_RS06870 at 1477.983 kb on - strand, within ABIE51_RS06870 at 1478.015 kb on + strand, within ABIE51_RS06870 at 1478.015 kb on + strand, within ABIE51_RS06870 at 1478.015 kb on + strand, within ABIE51_RS06870 at 1478.016 kb on - strand, within ABIE51_RS06870 at 1478.016 kb on - strand, within ABIE51_RS06870 at 1478.021 kb on + strand, within ABIE51_RS06870 at 1478.021 kb on + strand, within ABIE51_RS06870 at 1478.075 kb on + strand at 1478.199 kb on + strand, within ABIE51_RS06875 at 1478.200 kb on - strand, within ABIE51_RS06875 at 1478.212 kb on + strand, within ABIE51_RS06875 at 1478.212 kb on + strand, within ABIE51_RS06875 at 1478.212 kb on + strand, within ABIE51_RS06875 at 1478.213 kb on - strand, within ABIE51_RS06875 at 1478.269 kb on + strand, within ABIE51_RS06875 at 1478.270 kb on - strand, within ABIE51_RS06875 at 1478.270 kb on - strand, within ABIE51_RS06875 at 1478.284 kb on - strand, within ABIE51_RS06875 at 1478.458 kb on + strand, within ABIE51_RS06875 at 1478.459 kb on - strand, within ABIE51_RS06875 at 1478.459 kb on - strand, within ABIE51_RS06875 at 1478.536 kb on + strand, within ABIE51_RS06875 at 1478.536 kb on + strand, within ABIE51_RS06875 at 1478.536 kb on + strand, within ABIE51_RS06875 at 1478.537 kb on - strand, within ABIE51_RS06875 at 1478.537 kb on - strand, within ABIE51_RS06875
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 1,476,750 - ABIE51_RS06865 0.33 -0.2 1,476,756 + ABIE51_RS06865 0.34 -0.1 1,476,756 + ABIE51_RS06865 0.34 +0.2 1,476,756 + ABIE51_RS06865 0.34 -0.1 1,476,759 + ABIE51_RS06865 0.34 +0.7 1,476,759 + ABIE51_RS06865 0.34 -0.2 1,476,760 - ABIE51_RS06865 0.34 +0.7 1,476,858 + ABIE51_RS06865 0.42 -0.3 1,476,859 - ABIE51_RS06865 0.42 -0.3 1,476,859 - ABIE51_RS06865 0.42 +1.2 1,476,859 - ABIE51_RS06865 0.42 -0.4 1,476,859 - ABIE51_RS06865 0.42 +0.1 1,476,918 + ABIE51_RS06865 0.46 +0.6 1,477,066 - ABIE51_RS06865 0.58 +0.2 1,477,066 - ABIE51_RS06865 0.58 +1.0 1,477,162 + ABIE51_RS06865 0.65 -4.4 1,477,162 + ABIE51_RS06865 0.65 +0.1 1,477,163 - ABIE51_RS06865 0.65 -1.4 1,477,164 + ABIE51_RS06865 0.65 +0.4 1,477,165 - ABIE51_RS06865 0.65 -0.3 1,477,165 - ABIE51_RS06865 0.65 -1.5 1,477,269 + ABIE51_RS06865 0.73 +0.1 1,477,270 - ABIE51_RS06865 0.73 -0.2 1,477,270 - ABIE51_RS06865 0.73 +0.7 1,477,270 - ABIE51_RS06865 0.73 +1.1 1,477,299 + ABIE51_RS06865 0.76 -0.0 1,477,299 + ABIE51_RS06865 0.76 -0.6 1,477,299 + ABIE51_RS06865 0.76 -0.1 1,477,350 + ABIE51_RS06865 0.80 +1.2 1,477,351 - ABIE51_RS06865 0.80 +0.2 1,477,351 - ABIE51_RS06865 0.80 -0.0 1,477,713 + ABIE51_RS06870 0.11 -0.1 1,477,713 + ABIE51_RS06870 0.11 +2.5 1,477,714 - ABIE51_RS06870 0.11 +0.2 1,477,714 - ABIE51_RS06870 0.11 -2.2 1,477,714 - ABIE51_RS06870 0.11 +0.4 1,477,714 - ABIE51_RS06870 0.11 +0.6 1,477,714 - ABIE51_RS06870 0.11 +0.5 1,477,787 + ABIE51_RS06870 0.29 -1.5 1,477,788 - ABIE51_RS06870 0.29 -0.8 1,477,808 - ABIE51_RS06870 0.34 -1.5 1,477,982 + ABIE51_RS06870 0.77 -0.4 1,477,982 + ABIE51_RS06870 0.77 +0.8 1,477,982 + ABIE51_RS06870 0.77 -1.9 1,477,983 - ABIE51_RS06870 0.77 -0.7 1,477,983 - ABIE51_RS06870 0.77 -1.2 1,477,983 - ABIE51_RS06870 0.77 +2.1 1,478,015 + ABIE51_RS06870 0.85 -0.0 1,478,015 + ABIE51_RS06870 0.85 -0.7 1,478,015 + ABIE51_RS06870 0.85 +0.3 1,478,016 - ABIE51_RS06870 0.85 +0.9 1,478,016 - ABIE51_RS06870 0.85 -0.2 1,478,021 + ABIE51_RS06870 0.86 -0.4 1,478,021 + ABIE51_RS06870 0.86 +0.2 1,478,075 + +0.0 1,478,199 + ABIE51_RS06875 0.19 -0.6 1,478,200 - ABIE51_RS06875 0.20 +0.3 1,478,212 + ABIE51_RS06875 0.21 -0.5 1,478,212 + ABIE51_RS06875 0.21 +0.2 1,478,212 + ABIE51_RS06875 0.21 +0.1 1,478,213 - ABIE51_RS06875 0.22 +0.8 1,478,269 + ABIE51_RS06875 0.30 -2.2 1,478,270 - ABIE51_RS06875 0.30 -1.1 1,478,270 - ABIE51_RS06875 0.30 +0.4 1,478,284 - ABIE51_RS06875 0.32 +0.0 1,478,458 + ABIE51_RS06875 0.58 +1.2 1,478,459 - ABIE51_RS06875 0.58 -1.7 1,478,459 - ABIE51_RS06875 0.58 +0.2 1,478,536 + ABIE51_RS06875 0.69 -0.2 1,478,536 + ABIE51_RS06875 0.69 -1.1 1,478,536 + ABIE51_RS06875 0.69 +1.8 1,478,537 - ABIE51_RS06875 0.69 +0.3 1,478,537 - ABIE51_RS06875 0.69 -0.2
Or see this region's nucleotide sequence