Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS05600

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS05595 and ABIE51_RS05600 are separated by 507 nucleotidesABIE51_RS05600 and ABIE51_RS05605 are separated by 171 nucleotidesABIE51_RS05605 and ABIE51_RS05610 are separated by 205 nucleotides ABIE51_RS05595: ABIE51_RS05595 - putative Fe-S cluster assembly protein SufT, at 1,205,527 to 1,206,084 _RS05595 ABIE51_RS05600: ABIE51_RS05600 - S8 family peptidase, at 1,206,592 to 1,208,328 _RS05600 ABIE51_RS05605: ABIE51_RS05605 - proprotein convertase P-domain-containing protein, at 1,208,500 to 1,208,691 _RS05605 ABIE51_RS05610: ABIE51_RS05610 - M12 family metallo-peptidase, at 1,208,897 to 1,210,145 _RS05610 Position (kb) 1206 1207 1208 1209Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1206.083 kb on - strandat 1206.083 kb on - strandat 1206.282 kb on + strandat 1206.282 kb on + strandat 1206.283 kb on - strandat 1206.283 kb on - strandat 1206.283 kb on - strandat 1206.509 kb on + strandat 1206.510 kb on - strandat 1206.510 kb on - strandat 1206.546 kb on + strandat 1206.615 kb on + strandat 1206.616 kb on - strandat 1206.616 kb on - strandat 1206.616 kb on - strandat 1206.763 kb on + strandat 1206.763 kb on + strandat 1206.763 kb on - strandat 1206.764 kb on - strandat 1206.764 kb on - strandat 1206.764 kb on - strandat 1206.764 kb on - strandat 1206.764 kb on - strandat 1207.006 kb on + strand, within ABIE51_RS05600at 1207.006 kb on + strand, within ABIE51_RS05600at 1207.007 kb on - strand, within ABIE51_RS05600at 1207.007 kb on - strand, within ABIE51_RS05600at 1207.049 kb on - strand, within ABIE51_RS05600at 1207.060 kb on + strand, within ABIE51_RS05600at 1207.060 kb on + strand, within ABIE51_RS05600at 1207.061 kb on - strand, within ABIE51_RS05600at 1207.061 kb on - strand, within ABIE51_RS05600at 1207.061 kb on - strand, within ABIE51_RS05600at 1207.061 kb on - strand, within ABIE51_RS05600at 1207.376 kb on - strand, within ABIE51_RS05600at 1207.376 kb on - strand, within ABIE51_RS05600at 1207.424 kb on - strand, within ABIE51_RS05600at 1207.424 kb on - strand, within ABIE51_RS05600at 1207.424 kb on - strand, within ABIE51_RS05600at 1207.714 kb on + strand, within ABIE51_RS05600at 1207.801 kb on + strand, within ABIE51_RS05600at 1207.801 kb on + strand, within ABIE51_RS05600at 1207.801 kb on + strand, within ABIE51_RS05600at 1207.801 kb on + strand, within ABIE51_RS05600at 1207.801 kb on + strand, within ABIE51_RS05600at 1207.802 kb on - strand, within ABIE51_RS05600at 1207.802 kb on - strand, within ABIE51_RS05600at 1207.802 kb on - strand, within ABIE51_RS05600at 1207.810 kb on + strand, within ABIE51_RS05600at 1207.810 kb on + strand, within ABIE51_RS05600at 1207.810 kb on + strand, within ABIE51_RS05600at 1207.811 kb on - strand, within ABIE51_RS05600at 1208.089 kb on + strand, within ABIE51_RS05600at 1208.090 kb on + strand, within ABIE51_RS05600at 1208.090 kb on - strand, within ABIE51_RS05600at 1208.200 kb on + strandat 1208.200 kb on + strandat 1208.201 kb on - strandat 1208.270 kb on - strandat 1208.270 kb on - strandat 1208.270 kb on - strandat 1208.326 kb on + strandat 1208.327 kb on - strandat 1208.360 kb on - strandat 1208.360 kb on - strandat 1208.378 kb on - strandat 1208.378 kb on - strandat 1208.378 kb on - strandat 1208.483 kb on - strandat 1208.530 kb on + strand, within ABIE51_RS05605at 1208.531 kb on - strand, within ABIE51_RS05605at 1208.531 kb on - strand, within ABIE51_RS05605at 1208.531 kb on - strand, within ABIE51_RS05605at 1208.662 kb on + strand, within ABIE51_RS05605at 1208.700 kb on + strandat 1208.700 kb on + strandat 1208.700 kb on + strandat 1208.701 kb on - strandat 1208.701 kb on - strandat 1208.701 kb on - strandat 1208.701 kb on - strandat 1208.701 kb on - strandat 1208.817 kb on + strandat 1208.817 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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1,206,083 - -0.2
1,206,083 - +1.0
1,206,282 + -0.7
1,206,282 + +0.0
1,206,283 - -0.1
1,206,283 - +0.3
1,206,283 - -0.7
1,206,509 + -0.5
1,206,510 - +0.8
1,206,510 - +0.5
1,206,546 + -1.1
1,206,615 + -0.4
1,206,616 - -1.1
1,206,616 - -2.1
1,206,616 - +2.4
1,206,763 + -2.1
1,206,763 + -0.1
1,206,763 - +1.1
1,206,764 - -2.2
1,206,764 - +0.3
1,206,764 - +0.4
1,206,764 - +1.6
1,206,764 - +0.2
1,207,006 + ABIE51_RS05600 0.24 -0.7
1,207,006 + ABIE51_RS05600 0.24 +0.0
1,207,007 - ABIE51_RS05600 0.24 -0.8
1,207,007 - ABIE51_RS05600 0.24 +0.2
1,207,049 - ABIE51_RS05600 0.26 -4.6
1,207,060 + ABIE51_RS05600 0.27 -0.2
1,207,060 + ABIE51_RS05600 0.27 -0.7
1,207,061 - ABIE51_RS05600 0.27 -0.5
1,207,061 - ABIE51_RS05600 0.27 -0.1
1,207,061 - ABIE51_RS05600 0.27 +0.7
1,207,061 - ABIE51_RS05600 0.27 -0.1
1,207,376 - ABIE51_RS05600 0.45 -0.4
1,207,376 - ABIE51_RS05600 0.45 +1.1
1,207,424 - ABIE51_RS05600 0.48 -2.0
1,207,424 - ABIE51_RS05600 0.48 -2.6
1,207,424 - ABIE51_RS05600 0.48 +0.3
1,207,714 + ABIE51_RS05600 0.65 +0.8
1,207,801 + ABIE51_RS05600 0.70 +0.4
1,207,801 + ABIE51_RS05600 0.70 +0.4
1,207,801 + ABIE51_RS05600 0.70 -0.8
1,207,801 + ABIE51_RS05600 0.70 +0.4
1,207,801 + ABIE51_RS05600 0.70 -0.4
1,207,802 - ABIE51_RS05600 0.70 -1.4
1,207,802 - ABIE51_RS05600 0.70 +1.0
1,207,802 - ABIE51_RS05600 0.70 -0.0
1,207,810 + ABIE51_RS05600 0.70 +0.1
1,207,810 + ABIE51_RS05600 0.70 -0.4
1,207,810 + ABIE51_RS05600 0.70 +1.0
1,207,811 - ABIE51_RS05600 0.70 +0.2
1,208,089 + ABIE51_RS05600 0.86 -0.9
1,208,090 + ABIE51_RS05600 0.86 +0.1
1,208,090 - ABIE51_RS05600 0.86 +0.5
1,208,200 + +2.3
1,208,200 + +0.6
1,208,201 - -1.4
1,208,270 - -0.4
1,208,270 - +0.2
1,208,270 - -3.0
1,208,326 + +0.8
1,208,327 - +0.7
1,208,360 - +0.5
1,208,360 - -0.9
1,208,378 - -0.2
1,208,378 - +0.1
1,208,378 - -0.6
1,208,483 - +0.7
1,208,530 + ABIE51_RS05605 0.16 +0.8
1,208,531 - ABIE51_RS05605 0.16 -2.1
1,208,531 - ABIE51_RS05605 0.16 -0.5
1,208,531 - ABIE51_RS05605 0.16 +0.5
1,208,662 + ABIE51_RS05605 0.84 -1.9
1,208,700 + +0.2
1,208,700 + +0.2
1,208,700 + +1.0
1,208,701 - +1.0
1,208,701 - +2.4
1,208,701 - +0.3
1,208,701 - -0.5
1,208,701 - -0.6
1,208,817 + -1.1
1,208,817 + -2.1

Or see this region's nucleotide sequence