Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS05595 and ABIE51_RS05600 are separated by 507 nucleotides ABIE51_RS05600 and ABIE51_RS05605 are separated by 171 nucleotides ABIE51_RS05605 and ABIE51_RS05610 are separated by 205 nucleotides
ABIE51_RS05595: ABIE51_RS05595 - putative Fe-S cluster assembly protein SufT, at 1,205,527 to 1,206,084
_RS05595
ABIE51_RS05600: ABIE51_RS05600 - S8 family peptidase, at 1,206,592 to 1,208,328
_RS05600
ABIE51_RS05605: ABIE51_RS05605 - proprotein convertase P-domain-containing protein, at 1,208,500 to 1,208,691
_RS05605
ABIE51_RS05610: ABIE51_RS05610 - M12 family metallo-peptidase, at 1,208,897 to 1,210,145
_RS05610
Position (kb)
1206
1207
1208
1209 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1206.083 kb on - strand at 1206.083 kb on - strand at 1206.282 kb on + strand at 1206.282 kb on + strand at 1206.283 kb on - strand at 1206.283 kb on - strand at 1206.283 kb on - strand at 1206.509 kb on + strand at 1206.510 kb on - strand at 1206.510 kb on - strand at 1206.546 kb on + strand at 1206.615 kb on + strand at 1206.616 kb on - strand at 1206.616 kb on - strand at 1206.616 kb on - strand at 1206.763 kb on + strand at 1206.763 kb on + strand at 1206.763 kb on - strand at 1206.764 kb on - strand at 1206.764 kb on - strand at 1206.764 kb on - strand at 1206.764 kb on - strand at 1206.764 kb on - strand at 1207.006 kb on + strand, within ABIE51_RS05600 at 1207.006 kb on + strand, within ABIE51_RS05600 at 1207.007 kb on - strand, within ABIE51_RS05600 at 1207.007 kb on - strand, within ABIE51_RS05600 at 1207.049 kb on - strand, within ABIE51_RS05600 at 1207.060 kb on + strand, within ABIE51_RS05600 at 1207.060 kb on + strand, within ABIE51_RS05600 at 1207.061 kb on - strand, within ABIE51_RS05600 at 1207.061 kb on - strand, within ABIE51_RS05600 at 1207.061 kb on - strand, within ABIE51_RS05600 at 1207.061 kb on - strand, within ABIE51_RS05600 at 1207.376 kb on - strand, within ABIE51_RS05600 at 1207.376 kb on - strand, within ABIE51_RS05600 at 1207.424 kb on - strand, within ABIE51_RS05600 at 1207.424 kb on - strand, within ABIE51_RS05600 at 1207.424 kb on - strand, within ABIE51_RS05600 at 1207.714 kb on + strand, within ABIE51_RS05600 at 1207.801 kb on + strand, within ABIE51_RS05600 at 1207.801 kb on + strand, within ABIE51_RS05600 at 1207.801 kb on + strand, within ABIE51_RS05600 at 1207.801 kb on + strand, within ABIE51_RS05600 at 1207.801 kb on + strand, within ABIE51_RS05600 at 1207.802 kb on - strand, within ABIE51_RS05600 at 1207.802 kb on - strand, within ABIE51_RS05600 at 1207.802 kb on - strand, within ABIE51_RS05600 at 1207.810 kb on + strand, within ABIE51_RS05600 at 1207.810 kb on + strand, within ABIE51_RS05600 at 1207.810 kb on + strand, within ABIE51_RS05600 at 1207.811 kb on - strand, within ABIE51_RS05600 at 1208.089 kb on + strand, within ABIE51_RS05600 at 1208.090 kb on + strand, within ABIE51_RS05600 at 1208.090 kb on - strand, within ABIE51_RS05600 at 1208.200 kb on + strand at 1208.200 kb on + strand at 1208.201 kb on - strand at 1208.270 kb on - strand at 1208.270 kb on - strand at 1208.270 kb on - strand at 1208.326 kb on + strand at 1208.327 kb on - strand at 1208.360 kb on - strand at 1208.360 kb on - strand at 1208.378 kb on - strand at 1208.378 kb on - strand at 1208.378 kb on - strand at 1208.483 kb on - strand at 1208.530 kb on + strand, within ABIE51_RS05605 at 1208.531 kb on - strand, within ABIE51_RS05605 at 1208.531 kb on - strand, within ABIE51_RS05605 at 1208.531 kb on - strand, within ABIE51_RS05605 at 1208.662 kb on + strand, within ABIE51_RS05605 at 1208.700 kb on + strand at 1208.700 kb on + strand at 1208.700 kb on + strand at 1208.701 kb on - strand at 1208.701 kb on - strand at 1208.701 kb on - strand at 1208.701 kb on - strand at 1208.701 kb on - strand at 1208.817 kb on + strand at 1208.817 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 1,206,083 - -0.2 1,206,083 - +1.0 1,206,282 + -0.7 1,206,282 + +0.0 1,206,283 - -0.1 1,206,283 - +0.3 1,206,283 - -0.7 1,206,509 + -0.5 1,206,510 - +0.8 1,206,510 - +0.5 1,206,546 + -1.1 1,206,615 + -0.4 1,206,616 - -1.1 1,206,616 - -2.1 1,206,616 - +2.4 1,206,763 + -2.1 1,206,763 + -0.1 1,206,763 - +1.1 1,206,764 - -2.2 1,206,764 - +0.3 1,206,764 - +0.4 1,206,764 - +1.6 1,206,764 - +0.2 1,207,006 + ABIE51_RS05600 0.24 -0.7 1,207,006 + ABIE51_RS05600 0.24 +0.0 1,207,007 - ABIE51_RS05600 0.24 -0.8 1,207,007 - ABIE51_RS05600 0.24 +0.2 1,207,049 - ABIE51_RS05600 0.26 -4.6 1,207,060 + ABIE51_RS05600 0.27 -0.2 1,207,060 + ABIE51_RS05600 0.27 -0.7 1,207,061 - ABIE51_RS05600 0.27 -0.5 1,207,061 - ABIE51_RS05600 0.27 -0.1 1,207,061 - ABIE51_RS05600 0.27 +0.7 1,207,061 - ABIE51_RS05600 0.27 -0.1 1,207,376 - ABIE51_RS05600 0.45 -0.4 1,207,376 - ABIE51_RS05600 0.45 +1.1 1,207,424 - ABIE51_RS05600 0.48 -2.0 1,207,424 - ABIE51_RS05600 0.48 -2.6 1,207,424 - ABIE51_RS05600 0.48 +0.3 1,207,714 + ABIE51_RS05600 0.65 +0.8 1,207,801 + ABIE51_RS05600 0.70 +0.4 1,207,801 + ABIE51_RS05600 0.70 +0.4 1,207,801 + ABIE51_RS05600 0.70 -0.8 1,207,801 + ABIE51_RS05600 0.70 +0.4 1,207,801 + ABIE51_RS05600 0.70 -0.4 1,207,802 - ABIE51_RS05600 0.70 -1.4 1,207,802 - ABIE51_RS05600 0.70 +1.0 1,207,802 - ABIE51_RS05600 0.70 -0.0 1,207,810 + ABIE51_RS05600 0.70 +0.1 1,207,810 + ABIE51_RS05600 0.70 -0.4 1,207,810 + ABIE51_RS05600 0.70 +1.0 1,207,811 - ABIE51_RS05600 0.70 +0.2 1,208,089 + ABIE51_RS05600 0.86 -0.9 1,208,090 + ABIE51_RS05600 0.86 +0.1 1,208,090 - ABIE51_RS05600 0.86 +0.5 1,208,200 + +2.3 1,208,200 + +0.6 1,208,201 - -1.4 1,208,270 - -0.4 1,208,270 - +0.2 1,208,270 - -3.0 1,208,326 + +0.8 1,208,327 - +0.7 1,208,360 - +0.5 1,208,360 - -0.9 1,208,378 - -0.2 1,208,378 - +0.1 1,208,378 - -0.6 1,208,483 - +0.7 1,208,530 + ABIE51_RS05605 0.16 +0.8 1,208,531 - ABIE51_RS05605 0.16 -2.1 1,208,531 - ABIE51_RS05605 0.16 -0.5 1,208,531 - ABIE51_RS05605 0.16 +0.5 1,208,662 + ABIE51_RS05605 0.84 -1.9 1,208,700 + +0.2 1,208,700 + +0.2 1,208,700 + +1.0 1,208,701 - +1.0 1,208,701 - +2.4 1,208,701 - +0.3 1,208,701 - -0.5 1,208,701 - -0.6 1,208,817 + -1.1 1,208,817 + -2.1
Or see this region's nucleotide sequence