Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS02880

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS02875 and ABIE51_RS02880 are separated by 215 nucleotidesABIE51_RS02880 and ABIE51_RS02885 are separated by 258 nucleotides ABIE51_RS02875: ABIE51_RS02875 - pectate lyase, at 636,290 to 637,633 _RS02875 ABIE51_RS02880: ABIE51_RS02880 - TonB-dependent receptor, at 637,849 to 640,692 _RS02880 ABIE51_RS02885: ABIE51_RS02885 - sugar kinase, at 640,951 to 641,958 _RS02885 Position (kb) 637 638 639 640 641Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 636.964 kb on - strand, within ABIE51_RS02875at 636.964 kb on - strand, within ABIE51_RS02875at 637.287 kb on + strand, within ABIE51_RS02875at 637.321 kb on - strand, within ABIE51_RS02875at 637.649 kb on + strandat 637.649 kb on + strandat 637.650 kb on - strandat 637.704 kb on - strandat 637.860 kb on - strandat 637.860 kb on - strandat 637.860 kb on - strandat 637.878 kb on - strandat 637.898 kb on + strandat 637.899 kb on - strandat 638.093 kb on + strandat 638.135 kb on + strand, within ABIE51_RS02880at 638.150 kb on + strand, within ABIE51_RS02880at 638.151 kb on - strand, within ABIE51_RS02880at 638.213 kb on + strand, within ABIE51_RS02880at 638.214 kb on - strand, within ABIE51_RS02880at 638.235 kb on - strand, within ABIE51_RS02880at 638.235 kb on - strand, within ABIE51_RS02880at 638.235 kb on - strand, within ABIE51_RS02880at 638.240 kb on + strand, within ABIE51_RS02880at 638.241 kb on - strand, within ABIE51_RS02880at 638.300 kb on + strand, within ABIE51_RS02880at 638.420 kb on + strand, within ABIE51_RS02880at 638.420 kb on + strand, within ABIE51_RS02880at 638.420 kb on + strand, within ABIE51_RS02880at 638.421 kb on - strand, within ABIE51_RS02880at 638.421 kb on - strand, within ABIE51_RS02880at 638.423 kb on + strand, within ABIE51_RS02880at 638.423 kb on + strand, within ABIE51_RS02880at 638.424 kb on - strand, within ABIE51_RS02880at 638.471 kb on + strand, within ABIE51_RS02880at 638.471 kb on + strand, within ABIE51_RS02880at 638.472 kb on - strand, within ABIE51_RS02880at 638.726 kb on + strand, within ABIE51_RS02880at 638.960 kb on + strand, within ABIE51_RS02880at 639.137 kb on + strand, within ABIE51_RS02880at 639.137 kb on + strand, within ABIE51_RS02880at 639.137 kb on + strand, within ABIE51_RS02880at 639.138 kb on - strand, within ABIE51_RS02880at 639.138 kb on - strand, within ABIE51_RS02880at 639.138 kb on - strand, within ABIE51_RS02880at 639.138 kb on - strand, within ABIE51_RS02880at 639.138 kb on - strand, within ABIE51_RS02880at 639.349 kb on - strand, within ABIE51_RS02880at 639.350 kb on + strand, within ABIE51_RS02880at 639.350 kb on + strand, within ABIE51_RS02880at 639.351 kb on - strand, within ABIE51_RS02880at 639.351 kb on - strand, within ABIE51_RS02880at 639.470 kb on + strand, within ABIE51_RS02880at 639.471 kb on - strand, within ABIE51_RS02880at 639.510 kb on - strand, within ABIE51_RS02880at 639.552 kb on - strand, within ABIE51_RS02880at 639.722 kb on + strand, within ABIE51_RS02880at 639.722 kb on + strand, within ABIE51_RS02880at 639.722 kb on + strand, within ABIE51_RS02880at 639.722 kb on + strand, within ABIE51_RS02880at 639.722 kb on + strand, within ABIE51_RS02880at 639.723 kb on - strand, within ABIE51_RS02880at 639.819 kb on - strand, within ABIE51_RS02880at 639.947 kb on + strand, within ABIE51_RS02880at 640.043 kb on + strand, within ABIE51_RS02880at 640.044 kb on - strand, within ABIE51_RS02880at 640.082 kb on + strand, within ABIE51_RS02880at 640.692 kb on + strandat 640.692 kb on + strandat 640.692 kb on + strandat 640.692 kb on + strandat 640.693 kb on - strandat 640.693 kb on - strandat 640.693 kb on - strandat 640.717 kb on + strandat 640.718 kb on - strandat 640.718 kb on - strandat 640.759 kb on - strandat 640.759 kb on - strandat 640.759 kb on - strandat 640.770 kb on + strandat 641.109 kb on - strand, within ABIE51_RS02885at 641.109 kb on - strand, within ABIE51_RS02885at 641.109 kb on - strand, within ABIE51_RS02885at 641.215 kb on + strand, within ABIE51_RS02885at 641.215 kb on + strand, within ABIE51_RS02885at 641.215 kb on + strand, within ABIE51_RS02885at 641.216 kb on - strand, within ABIE51_RS02885at 641.261 kb on - strand, within ABIE51_RS02885at 641.261 kb on - strand, within ABIE51_RS02885at 641.300 kb on - strand, within ABIE51_RS02885

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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636,964 - ABIE51_RS02875 0.50 -2.4
636,964 - ABIE51_RS02875 0.50 +0.2
637,287 + ABIE51_RS02875 0.74 -0.0
637,321 - ABIE51_RS02875 0.77 +0.9
637,649 + -0.3
637,649 + -0.3
637,650 - +0.8
637,704 - +0.4
637,860 - +0.9
637,860 - +1.0
637,860 - +0.0
637,878 - +0.0
637,898 + +0.2
637,899 - -0.7
638,093 + +0.5
638,135 + ABIE51_RS02880 0.10 -0.0
638,150 + ABIE51_RS02880 0.11 +0.3
638,151 - ABIE51_RS02880 0.11 +0.3
638,213 + ABIE51_RS02880 0.13 +1.2
638,214 - ABIE51_RS02880 0.13 +0.5
638,235 - ABIE51_RS02880 0.14 +0.7
638,235 - ABIE51_RS02880 0.14 -1.3
638,235 - ABIE51_RS02880 0.14 +1.6
638,240 + ABIE51_RS02880 0.14 +0.2
638,241 - ABIE51_RS02880 0.14 +0.2
638,300 + ABIE51_RS02880 0.16 -1.0
638,420 + ABIE51_RS02880 0.20 +0.4
638,420 + ABIE51_RS02880 0.20 -0.2
638,420 + ABIE51_RS02880 0.20 -2.0
638,421 - ABIE51_RS02880 0.20 -0.3
638,421 - ABIE51_RS02880 0.20 +2.2
638,423 + ABIE51_RS02880 0.20 +1.2
638,423 + ABIE51_RS02880 0.20 -0.3
638,424 - ABIE51_RS02880 0.20 -0.5
638,471 + ABIE51_RS02880 0.22 -0.3
638,471 + ABIE51_RS02880 0.22 +0.8
638,472 - ABIE51_RS02880 0.22 +0.4
638,726 + ABIE51_RS02880 0.31 -0.1
638,960 + ABIE51_RS02880 0.39 -0.3
639,137 + ABIE51_RS02880 0.45 +0.6
639,137 + ABIE51_RS02880 0.45 +0.4
639,137 + ABIE51_RS02880 0.45 +0.8
639,138 - ABIE51_RS02880 0.45 +0.3
639,138 - ABIE51_RS02880 0.45 +1.2
639,138 - ABIE51_RS02880 0.45 +0.8
639,138 - ABIE51_RS02880 0.45 -0.5
639,138 - ABIE51_RS02880 0.45 +0.0
639,349 - ABIE51_RS02880 0.53 -0.7
639,350 + ABIE51_RS02880 0.53 -0.5
639,350 + ABIE51_RS02880 0.53 -0.1
639,351 - ABIE51_RS02880 0.53 +1.6
639,351 - ABIE51_RS02880 0.53 +0.6
639,470 + ABIE51_RS02880 0.57 +0.1
639,471 - ABIE51_RS02880 0.57 -0.3
639,510 - ABIE51_RS02880 0.58 +0.4
639,552 - ABIE51_RS02880 0.60 -0.3
639,722 + ABIE51_RS02880 0.66 -1.9
639,722 + ABIE51_RS02880 0.66 -0.4
639,722 + ABIE51_RS02880 0.66 -0.7
639,722 + ABIE51_RS02880 0.66 -0.4
639,722 + ABIE51_RS02880 0.66 +0.7
639,723 - ABIE51_RS02880 0.66 +0.7
639,819 - ABIE51_RS02880 0.69 +1.2
639,947 + ABIE51_RS02880 0.74 +0.5
640,043 + ABIE51_RS02880 0.77 +0.1
640,044 - ABIE51_RS02880 0.77 -0.6
640,082 + ABIE51_RS02880 0.79 +0.3
640,692 + -2.6
640,692 + -0.6
640,692 + -0.1
640,692 + -0.4
640,693 - -0.1
640,693 - -1.6
640,693 - -0.2
640,717 + -2.9
640,718 - -0.2
640,718 - -0.3
640,759 - +0.2
640,759 - -0.1
640,759 - -0.5
640,770 + -0.3
641,109 - ABIE51_RS02885 0.16 -2.2
641,109 - ABIE51_RS02885 0.16 +0.5
641,109 - ABIE51_RS02885 0.16 +0.6
641,215 + ABIE51_RS02885 0.26 -0.8
641,215 + ABIE51_RS02885 0.26 -0.1
641,215 + ABIE51_RS02885 0.26 -0.1
641,216 - ABIE51_RS02885 0.26 +1.2
641,261 - ABIE51_RS02885 0.31 -0.2
641,261 - ABIE51_RS02885 0.31 +0.5
641,300 - ABIE51_RS02885 0.35 +1.2

Or see this region's nucleotide sequence