Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS02865 and ABIE51_RS02870 are separated by 106 nucleotides ABIE51_RS02870 and ABIE51_RS02875 are separated by 98 nucleotides
ABIE51_RS02865: ABIE51_RS02865 - rhamnogalacturonan acetylesterase, at 634,295 to 635,041
_RS02865
ABIE51_RS02870: ABIE51_RS02870 - pectinesterase family protein, at 635,148 to 636,191
_RS02870
ABIE51_RS02875: ABIE51_RS02875 - pectate lyase, at 636,290 to 637,633
_RS02875
Position (kb) 635
636
637 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 634.419 kb on + strand, within ABIE51_RS02865 at 634.420 kb on - strand, within ABIE51_RS02865 at 634.692 kb on + strand, within ABIE51_RS02865 at 634.693 kb on - strand, within ABIE51_RS02865 at 634.693 kb on - strand, within ABIE51_RS02865 at 634.693 kb on - strand, within ABIE51_RS02865 at 635.015 kb on + strand at 635.016 kb on - strand at 635.189 kb on - strand at 635.321 kb on - strand, within ABIE51_RS02870 at 635.321 kb on - strand, within ABIE51_RS02870 at 635.410 kb on + strand, within ABIE51_RS02870 at 635.411 kb on - strand, within ABIE51_RS02870 at 635.522 kb on - strand, within ABIE51_RS02870 at 635.522 kb on - strand, within ABIE51_RS02870 at 635.522 kb on - strand, within ABIE51_RS02870 at 635.558 kb on - strand, within ABIE51_RS02870 at 635.833 kb on + strand, within ABIE51_RS02870 at 636.151 kb on - strand at 636.414 kb on + strand at 636.414 kb on + strand at 636.414 kb on + strand at 636.415 kb on - strand at 636.591 kb on + strand, within ABIE51_RS02875 at 636.598 kb on - strand, within ABIE51_RS02875 at 636.627 kb on + strand, within ABIE51_RS02875 at 636.964 kb on - strand, within ABIE51_RS02875 at 636.964 kb on - strand, within ABIE51_RS02875
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 634,419 + ABIE51_RS02865 0.17 +1.5 634,420 - ABIE51_RS02865 0.17 -0.4 634,692 + ABIE51_RS02865 0.53 +1.4 634,693 - ABIE51_RS02865 0.53 +0.2 634,693 - ABIE51_RS02865 0.53 -2.9 634,693 - ABIE51_RS02865 0.53 +1.0 635,015 + +0.2 635,016 - +0.2 635,189 - -0.1 635,321 - ABIE51_RS02870 0.17 +0.4 635,321 - ABIE51_RS02870 0.17 +0.5 635,410 + ABIE51_RS02870 0.25 +0.2 635,411 - ABIE51_RS02870 0.25 +0.1 635,522 - ABIE51_RS02870 0.36 -1.6 635,522 - ABIE51_RS02870 0.36 -0.6 635,522 - ABIE51_RS02870 0.36 -0.2 635,558 - ABIE51_RS02870 0.39 -1.1 635,833 + ABIE51_RS02870 0.66 -1.4 636,151 - -0.2 636,414 + -1.1 636,414 + +0.2 636,414 + -0.0 636,415 - -0.0 636,591 + ABIE51_RS02875 0.22 +0.0 636,598 - ABIE51_RS02875 0.23 +0.0 636,627 + ABIE51_RS02875 0.25 -0.6 636,964 - ABIE51_RS02875 0.50 -2.4 636,964 - ABIE51_RS02875 0.50 +0.2
Or see this region's nucleotide sequence