Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS02540 and ABIE51_RS02545 overlap by 4 nucleotides ABIE51_RS02545 and ABIE51_RS02550 are separated by 92 nucleotides
ABIE51_RS02540: ABIE51_RS02540 - hypothetical protein, at 561,557 to 562,339
_RS02540
ABIE51_RS02545: ABIE51_RS02545 - response regulator transcription factor, at 562,336 to 562,989
_RS02545
ABIE51_RS02550: ABIE51_RS02550 - MASE1 domain-containing protein, at 563,082 to 564,665
_RS02550
Position (kb) 562
563 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 561.358 kb on - strand at 561.389 kb on - strand at 561.448 kb on + strand at 561.448 kb on + strand at 561.449 kb on - strand at 561.449 kb on - strand at 561.449 kb on - strand at 561.449 kb on - strand at 561.449 kb on - strand at 561.449 kb on - strand at 561.449 kb on - strand at 561.449 kb on - strand at 561.449 kb on - strand at 561.455 kb on - strand at 561.482 kb on + strand at 561.573 kb on + strand at 561.791 kb on + strand, within ABIE51_RS02540 at 561.791 kb on + strand, within ABIE51_RS02540 at 561.809 kb on + strand, within ABIE51_RS02540 at 561.889 kb on + strand, within ABIE51_RS02540 at 561.912 kb on - strand, within ABIE51_RS02540 at 561.944 kb on + strand, within ABIE51_RS02540 at 561.944 kb on + strand, within ABIE51_RS02540 at 561.962 kb on + strand, within ABIE51_RS02540 at 561.963 kb on - strand, within ABIE51_RS02540 at 561.999 kb on - strand, within ABIE51_RS02540 at 562.028 kb on + strand, within ABIE51_RS02540 at 562.029 kb on - strand, within ABIE51_RS02540 at 562.029 kb on - strand, within ABIE51_RS02540 at 562.221 kb on - strand, within ABIE51_RS02540 at 562.443 kb on - strand, within ABIE51_RS02545 at 562.443 kb on - strand, within ABIE51_RS02545 at 562.443 kb on - strand, within ABIE51_RS02545 at 562.443 kb on - strand, within ABIE51_RS02545 at 562.613 kb on + strand, within ABIE51_RS02545 at 562.613 kb on + strand, within ABIE51_RS02545 at 562.613 kb on + strand, within ABIE51_RS02545 at 562.613 kb on + strand, within ABIE51_RS02545 at 562.613 kb on + strand, within ABIE51_RS02545 at 562.613 kb on + strand, within ABIE51_RS02545 at 562.613 kb on + strand, within ABIE51_RS02545 at 562.613 kb on + strand, within ABIE51_RS02545 at 562.613 kb on + strand, within ABIE51_RS02545 at 562.614 kb on - strand, within ABIE51_RS02545 at 562.614 kb on - strand, within ABIE51_RS02545 at 562.614 kb on - strand, within ABIE51_RS02545 at 562.682 kb on + strand, within ABIE51_RS02545 at 562.682 kb on + strand, within ABIE51_RS02545 at 562.683 kb on - strand, within ABIE51_RS02545 at 562.683 kb on - strand, within ABIE51_RS02545 at 562.683 kb on - strand, within ABIE51_RS02545 at 563.045 kb on - strand at 563.532 kb on + strand, within ABIE51_RS02550 at 563.633 kb on - strand, within ABIE51_RS02550 at 563.940 kb on + strand, within ABIE51_RS02550 at 563.940 kb on + strand, within ABIE51_RS02550 at 563.940 kb on + strand, within ABIE51_RS02550 at 563.940 kb on + strand, within ABIE51_RS02550 at 563.941 kb on - strand, within ABIE51_RS02550
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 561,358 - -0.1 561,389 - +0.4 561,448 + -1.3 561,448 + -1.2 561,449 - -2.9 561,449 - -0.2 561,449 - -0.4 561,449 - -1.2 561,449 - -0.2 561,449 - +2.3 561,449 - +0.8 561,449 - +0.6 561,449 - +0.8 561,455 - +0.4 561,482 + -0.2 561,573 + -1.3 561,791 + ABIE51_RS02540 0.30 -1.5 561,791 + ABIE51_RS02540 0.30 -2.3 561,809 + ABIE51_RS02540 0.32 -0.1 561,889 + ABIE51_RS02540 0.42 +0.3 561,912 - ABIE51_RS02540 0.45 -2.1 561,944 + ABIE51_RS02540 0.49 +0.4 561,944 + ABIE51_RS02540 0.49 -0.5 561,962 + ABIE51_RS02540 0.52 +1.2 561,963 - ABIE51_RS02540 0.52 -0.9 561,999 - ABIE51_RS02540 0.56 -0.2 562,028 + ABIE51_RS02540 0.60 +0.2 562,029 - ABIE51_RS02540 0.60 -2.6 562,029 - ABIE51_RS02540 0.60 +0.8 562,221 - ABIE51_RS02540 0.85 +0.6 562,443 - ABIE51_RS02545 0.16 +0.6 562,443 - ABIE51_RS02545 0.16 +0.2 562,443 - ABIE51_RS02545 0.16 +0.6 562,443 - ABIE51_RS02545 0.16 +0.3 562,613 + ABIE51_RS02545 0.42 +1.1 562,613 + ABIE51_RS02545 0.42 +0.2 562,613 + ABIE51_RS02545 0.42 -0.0 562,613 + ABIE51_RS02545 0.42 +0.3 562,613 + ABIE51_RS02545 0.42 +0.7 562,613 + ABIE51_RS02545 0.42 +0.2 562,613 + ABIE51_RS02545 0.42 -0.2 562,613 + ABIE51_RS02545 0.42 -1.3 562,613 + ABIE51_RS02545 0.42 +0.5 562,614 - ABIE51_RS02545 0.43 -0.5 562,614 - ABIE51_RS02545 0.43 +0.3 562,614 - ABIE51_RS02545 0.43 +1.3 562,682 + ABIE51_RS02545 0.53 -0.3 562,682 + ABIE51_RS02545 0.53 +0.9 562,683 - ABIE51_RS02545 0.53 -2.7 562,683 - ABIE51_RS02545 0.53 +0.9 562,683 - ABIE51_RS02545 0.53 -0.8 563,045 - -0.1 563,532 + ABIE51_RS02550 0.28 -0.3 563,633 - ABIE51_RS02550 0.35 -2.7 563,940 + ABIE51_RS02550 0.54 +0.5 563,940 + ABIE51_RS02550 0.54 +1.2 563,940 + ABIE51_RS02550 0.54 -1.4 563,940 + ABIE51_RS02550 0.54 -0.7 563,941 - ABIE51_RS02550 0.54 +1.1
Or see this region's nucleotide sequence