Strain Fitness in Sinorhizobium meliloti 1021 around SMc03796

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03794 and SMc03795 are separated by 147 nucleotidesSMc03795 and SMc03796 are separated by 8 nucleotidesSMc03796 and SMc03797 are separated by 263 nucleotides SMc03794: SMc03794 - hypothetical protein, at 3,460,182 to 3,460,433 SMc03794 SMc03795: SMc03795 - isopropylmalate isomerase small subunit, at 3,460,581 to 3,461,186 SMc03795 SMc03796: SMc03796 - hypothetical protein, at 3,461,195 to 3,461,575 SMc03796 SMc03797: SMc03797 - homoserine O-succinyltransferase, at 3,461,839 to 3,462,834 SMc03797 Position (kb) 3461 3462Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3460.432 kb on - strandat 3460.457 kb on - strandat 3460.538 kb on + strandat 3460.723 kb on - strand, within SMc03795at 3460.902 kb on + strand, within SMc03795at 3461.148 kb on + strandat 3461.246 kb on + strand, within SMc03796at 3461.300 kb on + strand, within SMc03796at 3461.307 kb on - strand, within SMc03796at 3461.307 kb on - strand, within SMc03796at 3461.423 kb on + strand, within SMc03796at 3461.424 kb on - strand, within SMc03796at 3461.426 kb on + strand, within SMc03796at 3461.426 kb on + strand, within SMc03796at 3461.426 kb on + strand, within SMc03796at 3461.427 kb on - strand, within SMc03796at 3461.427 kb on - strand, within SMc03796at 3461.921 kb on + strandat 3462.006 kb on - strand, within SMc03797at 3462.006 kb on - strand, within SMc03797at 3462.006 kb on - strand, within SMc03797at 3462.173 kb on - strand, within SMc03797at 3462.173 kb on - strand, within SMc03797at 3462.173 kb on - strand, within SMc03797at 3462.173 kb on - strand, within SMc03797at 3462.355 kb on + strand, within SMc03797at 3462.442 kb on + strand, within SMc03797at 3462.442 kb on + strand, within SMc03797at 3462.572 kb on + strand, within SMc03797at 3462.573 kb on - strand, within SMc03797

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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3,460,432 - -0.3
3,460,457 - -0.3
3,460,538 + +1.0
3,460,723 - SMc03795 0.23 -3.8
3,460,902 + SMc03795 0.53 -2.8
3,461,148 + -1.2
3,461,246 + SMc03796 0.13 -0.1
3,461,300 + SMc03796 0.28 +0.1
3,461,307 - SMc03796 0.29 -0.4
3,461,307 - SMc03796 0.29 -0.3
3,461,423 + SMc03796 0.60 -0.9
3,461,424 - SMc03796 0.60 +0.6
3,461,426 + SMc03796 0.61 -0.7
3,461,426 + SMc03796 0.61 -0.2
3,461,426 + SMc03796 0.61 -0.3
3,461,427 - SMc03796 0.61 -0.5
3,461,427 - SMc03796 0.61 -0.1
3,461,921 + -3.7
3,462,006 - SMc03797 0.17 -5.8
3,462,006 - SMc03797 0.17 -4.6
3,462,006 - SMc03797 0.17 -3.8
3,462,173 - SMc03797 0.34 -3.0
3,462,173 - SMc03797 0.34 -5.4
3,462,173 - SMc03797 0.34 -3.9
3,462,173 - SMc03797 0.34 -5.6
3,462,355 + SMc03797 0.52 -1.7
3,462,442 + SMc03797 0.61 -0.7
3,462,442 + SMc03797 0.61 -6.3
3,462,572 + SMc03797 0.74 -5.4
3,462,573 - SMc03797 0.74 -4.9

Or see this region's nucleotide sequence