Strain Fitness in Sinorhizobium meliloti 1021 around SMa1591

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1589 and SMa1591 are separated by 494 nucleotidesSMa1591 and SMa1592 overlap by 55 nucleotidesSMa1592 and SMa1593 overlap by 295 nucleotides SMa1589: SMa1589 - hypothetical protein, at 883,252 to 883,638 SMa1589 SMa1591: SMa1591 - CyaI3 adenylate/guanylate cyclase, at 884,133 to 887,612 SMa1591 SMa1592: SMa1592 - oxidoreductase, fragment, at 887,558 to 888,271 SMa1592 SMa1593: SMa1593 - oxidoreductase, fragment, at 887,977 to 889,107 SMa1593 Position (kb) 884 885 886 887 888Strain fitness (log2 ratio) -2 -1 0 1at 883.178 kb on + strandat 883.179 kb on - strandat 883.209 kb on + strandat 883.253 kb on + strandat 883.253 kb on + strandat 883.253 kb on + strandat 883.253 kb on + strandat 883.253 kb on + strandat 883.254 kb on - strandat 883.298 kb on - strand, within SMa1589at 883.318 kb on + strand, within SMa1589at 883.442 kb on - strand, within SMa1589at 883.442 kb on - strand, within SMa1589at 883.455 kb on + strand, within SMa1589at 883.522 kb on + strand, within SMa1589at 883.604 kb on + strandat 883.613 kb on + strandat 883.614 kb on - strandat 883.614 kb on - strandat 883.615 kb on + strandat 883.616 kb on - strandat 883.616 kb on - strandat 883.616 kb on - strandat 883.650 kb on + strandat 883.671 kb on - strandat 883.705 kb on + strandat 884.028 kb on - strandat 884.043 kb on - strandat 884.068 kb on + strandat 884.116 kb on + strandat 884.117 kb on - strandat 884.117 kb on - strandat 884.135 kb on - strandat 884.135 kb on - strandat 884.289 kb on + strandat 884.290 kb on - strandat 884.299 kb on - strandat 884.602 kb on - strand, within SMa1591at 884.653 kb on - strand, within SMa1591at 884.725 kb on - strand, within SMa1591at 884.789 kb on - strand, within SMa1591at 884.852 kb on + strand, within SMa1591at 884.853 kb on - strand, within SMa1591at 884.978 kb on - strand, within SMa1591at 884.978 kb on - strand, within SMa1591at 884.978 kb on - strand, within SMa1591at 885.001 kb on + strand, within SMa1591at 885.002 kb on - strand, within SMa1591at 885.383 kb on + strand, within SMa1591at 885.440 kb on - strand, within SMa1591at 885.623 kb on + strand, within SMa1591at 885.623 kb on + strand, within SMa1591at 885.625 kb on + strand, within SMa1591at 885.625 kb on + strand, within SMa1591at 885.625 kb on + strand, within SMa1591at 885.626 kb on - strand, within SMa1591at 885.912 kb on + strand, within SMa1591at 886.261 kb on - strand, within SMa1591at 886.261 kb on - strand, within SMa1591at 886.499 kb on - strand, within SMa1591at 886.499 kb on - strand, within SMa1591at 886.518 kb on + strand, within SMa1591at 886.519 kb on - strand, within SMa1591at 886.600 kb on - strand, within SMa1591at 886.659 kb on + strand, within SMa1591at 886.659 kb on + strand, within SMa1591at 886.659 kb on + strand, within SMa1591at 886.659 kb on + strand, within SMa1591at 886.659 kb on + strand, within SMa1591at 886.660 kb on - strand, within SMa1591at 886.660 kb on - strand, within SMa1591at 886.660 kb on - strand, within SMa1591at 886.759 kb on - strand, within SMa1591at 886.845 kb on + strand, within SMa1591at 886.845 kb on + strand, within SMa1591at 886.846 kb on - strand, within SMa1591at 887.101 kb on + strand, within SMa1591at 887.125 kb on + strand, within SMa1591at 887.126 kb on - strand, within SMa1591at 887.126 kb on - strand, within SMa1591at 887.179 kb on + strand, within SMa1591at 887.179 kb on + strand, within SMa1591at 887.259 kb on + strand, within SMa1591at 887.259 kb on + strand, within SMa1591at 887.295 kb on + strandat 887.427 kb on - strandat 887.440 kb on - strandat 887.564 kb on + strandat 887.657 kb on - strand, within SMa1592at 888.096 kb on + strandat 888.261 kb on - strandat 888.333 kb on + strand, within SMa1593at 888.429 kb on - strand, within SMa1593at 888.517 kb on - strand, within SMa1593at 888.536 kb on + strand, within SMa1593at 888.537 kb on - strand, within SMa1593

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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883,178 + +1.1
883,179 - -0.8
883,209 + +0.2
883,253 + -0.7
883,253 + +1.3
883,253 + +0.1
883,253 + -1.1
883,253 + +0.1
883,254 - -0.4
883,298 - SMa1589 0.12 +0.2
883,318 + SMa1589 0.17 -0.4
883,442 - SMa1589 0.49 -0.2
883,442 - SMa1589 0.49 +0.1
883,455 + SMa1589 0.52 -0.6
883,522 + SMa1589 0.70 -0.7
883,604 + -0.4
883,613 + -0.0
883,614 - +0.9
883,614 - +0.3
883,615 + -1.5
883,616 - -0.4
883,616 - -0.5
883,616 - -0.1
883,650 + -0.2
883,671 - -0.4
883,705 + -0.1
884,028 - -0.1
884,043 - -0.3
884,068 + -0.5
884,116 + +0.2
884,117 - +0.3
884,117 - -0.3
884,135 - -0.6
884,135 - +0.1
884,289 + +0.9
884,290 - -0.6
884,299 - -0.5
884,602 - SMa1591 0.13 +0.1
884,653 - SMa1591 0.15 +0.2
884,725 - SMa1591 0.17 -0.2
884,789 - SMa1591 0.19 +1.0
884,852 + SMa1591 0.21 -0.4
884,853 - SMa1591 0.21 +0.6
884,978 - SMa1591 0.24 +0.0
884,978 - SMa1591 0.24 +0.3
884,978 - SMa1591 0.24 +0.2
885,001 + SMa1591 0.25 -0.1
885,002 - SMa1591 0.25 +0.1
885,383 + SMa1591 0.36 -1.3
885,440 - SMa1591 0.38 -0.2
885,623 + SMa1591 0.43 +0.1
885,623 + SMa1591 0.43 +1.0
885,625 + SMa1591 0.43 +1.7
885,625 + SMa1591 0.43 +1.0
885,625 + SMa1591 0.43 +0.7
885,626 - SMa1591 0.43 -0.0
885,912 + SMa1591 0.51 +0.9
886,261 - SMa1591 0.61 -0.4
886,261 - SMa1591 0.61 +0.8
886,499 - SMa1591 0.68 -0.1
886,499 - SMa1591 0.68 +0.1
886,518 + SMa1591 0.69 +0.1
886,519 - SMa1591 0.69 -0.1
886,600 - SMa1591 0.71 +0.2
886,659 + SMa1591 0.73 +0.6
886,659 + SMa1591 0.73 +0.2
886,659 + SMa1591 0.73 -0.1
886,659 + SMa1591 0.73 +0.3
886,659 + SMa1591 0.73 +0.1
886,660 - SMa1591 0.73 -0.3
886,660 - SMa1591 0.73 +0.2
886,660 - SMa1591 0.73 +0.0
886,759 - SMa1591 0.75 +0.0
886,845 + SMa1591 0.78 -0.1
886,845 + SMa1591 0.78 -1.8
886,846 - SMa1591 0.78 +0.3
887,101 + SMa1591 0.85 -0.3
887,125 + SMa1591 0.86 +0.2
887,126 - SMa1591 0.86 +0.7
887,126 - SMa1591 0.86 -1.1
887,179 + SMa1591 0.88 -0.8
887,179 + SMa1591 0.88 +0.4
887,259 + SMa1591 0.90 -0.3
887,259 + SMa1591 0.90 +0.1
887,295 + -0.3
887,427 - +0.1
887,440 - +0.3
887,564 + -0.2
887,657 - SMa1592 0.14 -0.5
888,096 + +0.7
888,261 - +0.0
888,333 + SMa1593 0.31 -0.1
888,429 - SMa1593 0.40 -0.0
888,517 - SMa1593 0.48 -0.2
888,536 + SMa1593 0.49 +0.3
888,537 - SMa1593 0.50 -0.4

Or see this region's nucleotide sequence