Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1209 and SMa1210 overlap by 4 nucleotides SMa1210 and SMa1211 overlap by 4 nucleotides
SMa1209: SMa1209 - FixI1 ATPase, at 662,787 to 665,060
SMa1209
SMa1210: SMa1210 - nitrogen fixation protein FixH, at 665,057 to 665,560
SMa1210
SMa1211: SMa1211 - FixG iron sulfur membrane protein, at 665,557 to 667,131
SMa1211
Position (kb) 665
666 Strain fitness (log2 ratio) -1
0
1 at 664.146 kb on + strand, within SMa1209 at 664.239 kb on + strand, within SMa1209 at 664.351 kb on + strand, within SMa1209 at 664.456 kb on + strand, within SMa1209 at 664.534 kb on + strand, within SMa1209 at 664.552 kb on + strand, within SMa1209 at 664.552 kb on + strand, within SMa1209 at 664.553 kb on - strand, within SMa1209 at 664.794 kb on - strand, within SMa1209 at 664.794 kb on - strand, within SMa1209 at 664.921 kb on + strand at 664.938 kb on + strand at 664.939 kb on - strand at 665.042 kb on + strand at 665.042 kb on + strand at 665.400 kb on + strand, within SMa1210 at 665.400 kb on + strand, within SMa1210 at 665.401 kb on - strand at 665.401 kb on - strand, within SMa1210 at 665.806 kb on - strand, within SMa1211 at 665.806 kb on - strand, within SMa1211 at 665.849 kb on + strand, within SMa1211 at 665.849 kb on + strand, within SMa1211 at 665.849 kb on + strand, within SMa1211 at 665.850 kb on - strand, within SMa1211 at 666.125 kb on + strand, within SMa1211 at 666.126 kb on - strand, within SMa1211 at 666.369 kb on - strand, within SMa1211 at 666.394 kb on + strand at 666.394 kb on + strand, within SMa1211 at 666.395 kb on - strand, within SMa1211 at 666.429 kb on + strand, within SMa1211 at 666.429 kb on + strand, within SMa1211 at 666.429 kb on + strand, within SMa1211 at 666.429 kb on + strand, within SMa1211 at 666.429 kb on + strand, within SMa1211 at 666.430 kb on - strand, within SMa1211 at 666.430 kb on - strand, within SMa1211 at 666.430 kb on - strand, within SMa1211 at 666.430 kb on - strand, within SMa1211 at 666.430 kb on - strand, within SMa1211 at 666.430 kb on - strand, within SMa1211 at 666.431 kb on + strand, within SMa1211 at 666.431 kb on + strand, within SMa1211 at 666.431 kb on + strand, within SMa1211 at 666.431 kb on + strand, within SMa1211 at 666.431 kb on + strand, within SMa1211 at 666.432 kb on - strand, within SMa1211 at 666.432 kb on - strand, within SMa1211 at 666.432 kb on - strand, within SMa1211 at 666.432 kb on - strand, within SMa1211 at 666.432 kb on - strand, within SMa1211 at 666.432 kb on - strand, within SMa1211 at 666.470 kb on + strand, within SMa1211 at 666.471 kb on - strand, within SMa1211 at 666.533 kb on - strand, within SMa1211
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 664,146 + SMa1209 0.60 +0.2 664,239 + SMa1209 0.64 +0.4 664,351 + SMa1209 0.69 -0.1 664,456 + SMa1209 0.73 +0.0 664,534 + SMa1209 0.77 +0.2 664,552 + SMa1209 0.78 +0.3 664,552 + SMa1209 0.78 +0.4 664,553 - SMa1209 0.78 +0.4 664,794 - SMa1209 0.88 +0.4 664,794 - SMa1209 0.88 +0.0 664,921 + +0.5 664,938 + -0.3 664,939 - +0.0 665,042 + -0.7 665,042 + +0.4 665,400 + SMa1210 0.68 +0.6 665,400 + SMa1210 0.68 -0.2 665,401 - +0.3 665,401 - SMa1210 0.68 +0.4 665,806 - SMa1211 0.16 -0.3 665,806 - SMa1211 0.16 -0.4 665,849 + SMa1211 0.19 -0.0 665,849 + SMa1211 0.19 -0.0 665,849 + SMa1211 0.19 -0.0 665,850 - SMa1211 0.19 +0.6 666,125 + SMa1211 0.36 -0.2 666,126 - SMa1211 0.36 +0.0 666,369 - SMa1211 0.52 +0.8 666,394 + -0.2 666,394 + SMa1211 0.53 -1.2 666,395 - SMa1211 0.53 +0.5 666,429 + SMa1211 0.55 -0.9 666,429 + SMa1211 0.55 -0.3 666,429 + SMa1211 0.55 +0.4 666,429 + SMa1211 0.55 +0.1 666,429 + SMa1211 0.55 -0.1 666,430 - SMa1211 0.55 +0.1 666,430 - SMa1211 0.55 -0.2 666,430 - SMa1211 0.55 +0.5 666,430 - SMa1211 0.55 +0.8 666,430 - SMa1211 0.55 -0.3 666,430 - SMa1211 0.55 +1.7 666,431 + SMa1211 0.55 -0.1 666,431 + SMa1211 0.55 -0.7 666,431 + SMa1211 0.55 -0.3 666,431 + SMa1211 0.55 +0.3 666,431 + SMa1211 0.55 +0.3 666,432 - SMa1211 0.56 +0.3 666,432 - SMa1211 0.56 -0.1 666,432 - SMa1211 0.56 +0.8 666,432 - SMa1211 0.56 +0.9 666,432 - SMa1211 0.56 +0.4 666,432 - SMa1211 0.56 +0.4 666,470 + SMa1211 0.58 -1.6 666,471 - SMa1211 0.58 -0.1 666,533 - SMa1211 0.62 +1.0
Or see this region's nucleotide sequence