Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21218 and SM_b21219 are separated by 2 nucleotides SM_b21219 and SM_b21220 overlap by 1 nucleotides SM_b21220 and SM_b21221 are separated by 242 nucleotides
SM_b21218: SM_b21218 - glucosamine-6-phosphate deaminase, isomerizing (EC 3.5.99.6) <small>(from data)</small>, at 780,746 to 781,765
_b21218
SM_b21219: SM_b21219 - ABC transporter for D-Glucosamine, permease component 1 <small>(from data)</small>, at 781,768 to 782,613
_b21219
SM_b21220: SM_b21220 - ABC transporter for D-Glucosamine, permease component 2 <small>(from data)</small>, at 782,613 to 783,494
_b21220
SM_b21221: SM_b21221 - ABC transporter for D-Glucosamine, periplasmic substrate-binding protein <small>(from data)</small>, at 783,737 to 784,975
_b21221
Position (kb) 782
783
784 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 781.758 kb on - strand at 781.758 kb on - strand at 781.821 kb on + strand at 781.822 kb on - strand at 781.822 kb on - strand at 781.822 kb on - strand at 781.822 kb on - strand at 781.822 kb on - strand at 781.822 kb on - strand at 781.964 kb on + strand, within SM_b21219 at 782.166 kb on - strand, within SM_b21219 at 782.208 kb on - strand, within SM_b21219 at 782.221 kb on - strand, within SM_b21219 at 782.222 kb on + strand, within SM_b21219 at 782.222 kb on + strand, within SM_b21219 at 782.222 kb on + strand, within SM_b21219 at 782.222 kb on + strand, within SM_b21219 at 782.222 kb on + strand, within SM_b21219 at 782.222 kb on + strand, within SM_b21219 at 782.222 kb on + strand, within SM_b21219 at 782.223 kb on - strand, within SM_b21219 at 782.223 kb on - strand, within SM_b21219 at 782.223 kb on - strand, within SM_b21219 at 782.256 kb on + strand, within SM_b21219 at 782.256 kb on + strand, within SM_b21219 at 782.256 kb on + strand, within SM_b21219 at 782.257 kb on - strand, within SM_b21219 at 782.257 kb on - strand, within SM_b21219 at 782.257 kb on - strand, within SM_b21219 at 782.258 kb on + strand, within SM_b21219 at 782.258 kb on + strand, within SM_b21219 at 782.258 kb on + strand, within SM_b21219 at 782.258 kb on + strand, within SM_b21219 at 782.258 kb on + strand, within SM_b21219 at 782.258 kb on + strand, within SM_b21219 at 782.259 kb on - strand, within SM_b21219 at 782.259 kb on - strand, within SM_b21219 at 782.259 kb on - strand, within SM_b21219 at 782.259 kb on - strand, within SM_b21219 at 782.259 kb on - strand, within SM_b21219 at 782.259 kb on - strand, within SM_b21219 at 782.259 kb on - strand, within SM_b21219 at 782.831 kb on + strand, within SM_b21220 at 782.831 kb on + strand, within SM_b21220 at 782.832 kb on - strand, within SM_b21220 at 782.832 kb on - strand, within SM_b21220 at 782.869 kb on + strand, within SM_b21220 at 782.870 kb on - strand, within SM_b21220 at 783.058 kb on + strand, within SM_b21220 at 783.059 kb on - strand, within SM_b21220 at 783.118 kb on + strand, within SM_b21220 at 783.118 kb on + strand, within SM_b21220 at 783.118 kb on + strand, within SM_b21220 at 783.118 kb on + strand, within SM_b21220 at 783.119 kb on - strand, within SM_b21220 at 783.119 kb on - strand, within SM_b21220 at 783.119 kb on - strand, within SM_b21220 at 783.331 kb on + strand, within SM_b21220 at 783.332 kb on - strand, within SM_b21220 at 783.332 kb on - strand, within SM_b21220 at 783.529 kb on + strand at 783.530 kb on - strand at 783.843 kb on + strand at 783.867 kb on + strand, within SM_b21221 at 783.867 kb on + strand, within SM_b21221 at 783.867 kb on + strand, within SM_b21221 at 783.940 kb on - strand, within SM_b21221 at 784.003 kb on + strand, within SM_b21221 at 784.003 kb on + strand, within SM_b21221 at 784.014 kb on + strand, within SM_b21221 at 784.015 kb on - strand, within SM_b21221 at 784.173 kb on + strand, within SM_b21221 at 784.173 kb on + strand, within SM_b21221 at 784.173 kb on + strand, within SM_b21221 at 784.173 kb on + strand, within SM_b21221 at 784.174 kb on - strand, within SM_b21221 at 784.174 kb on - strand, within SM_b21221 at 784.174 kb on - strand, within SM_b21221 at 784.174 kb on - strand, within SM_b21221 at 784.174 kb on - strand, within SM_b21221 at 784.179 kb on + strand, within SM_b21221 at 784.180 kb on - strand, within SM_b21221 at 784.180 kb on - strand, within SM_b21221 at 784.180 kb on - strand, within SM_b21221 at 784.180 kb on - strand, within SM_b21221 at 784.180 kb on - strand, within SM_b21221 at 784.229 kb on + strand, within SM_b21221 at 784.229 kb on + strand, within SM_b21221 at 784.229 kb on + strand, within SM_b21221 at 784.230 kb on - strand, within SM_b21221 at 784.268 kb on - strand, within SM_b21221 at 784.281 kb on + strand, within SM_b21221 at 784.282 kb on - strand, within SM_b21221 at 784.282 kb on - strand, within SM_b21221 at 784.296 kb on + strand, within SM_b21221 at 784.296 kb on + strand, within SM_b21221 at 784.297 kb on - strand, within SM_b21221 at 784.297 kb on - strand, within SM_b21221 at 784.297 kb on - strand, within SM_b21221 at 784.297 kb on - strand, within SM_b21221 at 784.297 kb on - strand, within SM_b21221 at 784.297 kb on - strand, within SM_b21221
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 781,758 - -1.7 781,758 - +1.3 781,821 + -0.3 781,822 - -0.2 781,822 - -0.2 781,822 - -1.8 781,822 - -1.3 781,822 - -0.5 781,822 - +0.1 781,964 + SM_b21219 0.23 +0.7 782,166 - SM_b21219 0.47 -0.7 782,208 - SM_b21219 0.52 -1.1 782,221 - SM_b21219 0.54 -0.8 782,222 + SM_b21219 0.54 -1.1 782,222 + SM_b21219 0.54 -1.1 782,222 + SM_b21219 0.54 -1.7 782,222 + SM_b21219 0.54 -0.5 782,222 + SM_b21219 0.54 -0.0 782,222 + SM_b21219 0.54 -2.5 782,222 + SM_b21219 0.54 -0.3 782,223 - SM_b21219 0.54 -0.8 782,223 - SM_b21219 0.54 -0.7 782,223 - SM_b21219 0.54 -0.2 782,256 + SM_b21219 0.58 -0.1 782,256 + SM_b21219 0.58 -0.6 782,256 + SM_b21219 0.58 -0.9 782,257 - SM_b21219 0.58 -0.7 782,257 - SM_b21219 0.58 -0.5 782,257 - SM_b21219 0.58 -1.0 782,258 + SM_b21219 0.58 -1.6 782,258 + SM_b21219 0.58 -1.2 782,258 + SM_b21219 0.58 -1.4 782,258 + SM_b21219 0.58 -4.6 782,258 + SM_b21219 0.58 -0.7 782,258 + SM_b21219 0.58 -0.6 782,259 - SM_b21219 0.58 -0.1 782,259 - SM_b21219 0.58 -0.3 782,259 - SM_b21219 0.58 -1.3 782,259 - SM_b21219 0.58 -0.3 782,259 - SM_b21219 0.58 -0.8 782,259 - SM_b21219 0.58 -0.8 782,259 - SM_b21219 0.58 -0.8 782,831 + SM_b21220 0.25 -1.8 782,831 + SM_b21220 0.25 -0.8 782,832 - SM_b21220 0.25 +0.2 782,832 - SM_b21220 0.25 +0.7 782,869 + SM_b21220 0.29 -0.6 782,870 - SM_b21220 0.29 -1.3 783,058 + SM_b21220 0.50 -0.4 783,059 - SM_b21220 0.51 +0.3 783,118 + SM_b21220 0.57 -0.8 783,118 + SM_b21220 0.57 -0.4 783,118 + SM_b21220 0.57 -0.5 783,118 + SM_b21220 0.57 +1.3 783,119 - SM_b21220 0.57 -0.1 783,119 - SM_b21220 0.57 -0.9 783,119 - SM_b21220 0.57 -0.3 783,331 + SM_b21220 0.81 -0.6 783,332 - SM_b21220 0.82 +0.2 783,332 - SM_b21220 0.82 +0.7 783,529 + -1.2 783,530 - -0.6 783,843 + -0.3 783,867 + SM_b21221 0.10 +0.1 783,867 + SM_b21221 0.10 +2.3 783,867 + SM_b21221 0.10 -0.7 783,940 - SM_b21221 0.16 -0.8 784,003 + SM_b21221 0.21 -0.5 784,003 + SM_b21221 0.21 -1.4 784,014 + SM_b21221 0.22 -1.8 784,015 - SM_b21221 0.22 -0.8 784,173 + SM_b21221 0.35 -0.4 784,173 + SM_b21221 0.35 -3.1 784,173 + SM_b21221 0.35 -1.0 784,173 + SM_b21221 0.35 -1.5 784,174 - SM_b21221 0.35 -0.7 784,174 - SM_b21221 0.35 -0.4 784,174 - SM_b21221 0.35 -0.6 784,174 - SM_b21221 0.35 -0.5 784,174 - SM_b21221 0.35 -0.1 784,179 + SM_b21221 0.36 -1.2 784,180 - SM_b21221 0.36 -0.6 784,180 - SM_b21221 0.36 -0.6 784,180 - SM_b21221 0.36 -0.2 784,180 - SM_b21221 0.36 -0.3 784,180 - SM_b21221 0.36 -1.1 784,229 + SM_b21221 0.40 -0.3 784,229 + SM_b21221 0.40 -0.3 784,229 + SM_b21221 0.40 -1.0 784,230 - SM_b21221 0.40 -0.6 784,268 - SM_b21221 0.43 -1.5 784,281 + SM_b21221 0.44 -0.7 784,282 - SM_b21221 0.44 +0.4 784,282 - SM_b21221 0.44 -1.0 784,296 + SM_b21221 0.45 -0.8 784,296 + SM_b21221 0.45 -0.6 784,297 - SM_b21221 0.45 -0.6 784,297 - SM_b21221 0.45 -0.6 784,297 - SM_b21221 0.45 -0.4 784,297 - SM_b21221 0.45 -0.9 784,297 - SM_b21221 0.45 +0.1 784,297 - SM_b21221 0.45 -0.4
Or see this region's nucleotide sequence