Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS31055

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS31050 and RR42_RS31055 are separated by 203 nucleotidesRR42_RS31055 and RR42_RS31060 are separated by 90 nucleotides RR42_RS31050: RR42_RS31050 - 3-hydroxyacyl-CoA dehydrogenase, at 2,345,985 to 2,346,956 _RS31050 RR42_RS31055: RR42_RS31055 - 3-hydroxybutyryl-CoA dehydrogenase, at 2,347,160 to 2,348,086 _RS31055 RR42_RS31060: RR42_RS31060 - diguanylate cyclase, at 2,348,177 to 2,349,748 _RS31060 Position (kb) 2347 2348 2349Strain fitness (log2 ratio) -1 0 1at 2346.185 kb on - strand, within RR42_RS31050at 2346.185 kb on - strand, within RR42_RS31050at 2346.185 kb on - strand, within RR42_RS31050at 2346.185 kb on - strand, within RR42_RS31050at 2346.192 kb on - strand, within RR42_RS31050at 2346.587 kb on + strand, within RR42_RS31050at 2346.588 kb on - strand, within RR42_RS31050at 2346.588 kb on - strand, within RR42_RS31050at 2346.818 kb on + strand, within RR42_RS31050at 2346.819 kb on - strand, within RR42_RS31050at 2346.897 kb on + strandat 2346.898 kb on - strandat 2347.081 kb on + strandat 2347.081 kb on + strandat 2347.081 kb on + strandat 2347.082 kb on - strandat 2347.640 kb on + strand, within RR42_RS31055at 2347.931 kb on - strand, within RR42_RS31055at 2348.148 kb on + strandat 2348.253 kb on + strandat 2348.253 kb on + strandat 2348.253 kb on + strandat 2348.254 kb on - strandat 2348.254 kb on - strandat 2348.500 kb on + strand, within RR42_RS31060at 2348.500 kb on + strand, within RR42_RS31060at 2348.501 kb on - strand, within RR42_RS31060at 2348.501 kb on - strand, within RR42_RS31060at 2348.613 kb on + strand, within RR42_RS31060at 2348.614 kb on - strand, within RR42_RS31060at 2348.614 kb on - strand, within RR42_RS31060at 2348.760 kb on + strand, within RR42_RS31060at 2348.760 kb on + strand, within RR42_RS31060at 2348.760 kb on + strand, within RR42_RS31060at 2348.760 kb on + strand, within RR42_RS31060at 2348.761 kb on - strand, within RR42_RS31060at 2348.761 kb on - strand, within RR42_RS31060at 2348.872 kb on + strand, within RR42_RS31060at 2348.872 kb on + strand, within RR42_RS31060at 2348.872 kb on + strand, within RR42_RS31060at 2348.873 kb on - strand, within RR42_RS31060at 2348.873 kb on - strand, within RR42_RS31060at 2349.006 kb on + strandat 2349.041 kb on + strand, within RR42_RS31060at 2349.041 kb on + strand, within RR42_RS31060at 2349.071 kb on + strand, within RR42_RS31060

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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2,346,185 - RR42_RS31050 0.21 -0.9
2,346,185 - RR42_RS31050 0.21 -0.0
2,346,185 - RR42_RS31050 0.21 -0.3
2,346,185 - RR42_RS31050 0.21 -0.4
2,346,192 - RR42_RS31050 0.21 -0.3
2,346,587 + RR42_RS31050 0.62 +0.5
2,346,588 - RR42_RS31050 0.62 +0.4
2,346,588 - RR42_RS31050 0.62 -0.2
2,346,818 + RR42_RS31050 0.86 +0.1
2,346,819 - RR42_RS31050 0.86 -0.3
2,346,897 + +0.8
2,346,898 - +0.6
2,347,081 + -0.7
2,347,081 + +0.3
2,347,081 + -0.9
2,347,082 - -0.0
2,347,640 + RR42_RS31055 0.52 +0.0
2,347,931 - RR42_RS31055 0.83 +0.7
2,348,148 + -0.3
2,348,253 + -0.2
2,348,253 + -0.6
2,348,253 + -0.7
2,348,254 - -0.9
2,348,254 - +0.9
2,348,500 + RR42_RS31060 0.21 +1.0
2,348,500 + RR42_RS31060 0.21 -0.1
2,348,501 - RR42_RS31060 0.21 -1.6
2,348,501 - RR42_RS31060 0.21 -0.2
2,348,613 + RR42_RS31060 0.28 +0.2
2,348,614 - RR42_RS31060 0.28 -0.6
2,348,614 - RR42_RS31060 0.28 +0.1
2,348,760 + RR42_RS31060 0.37 +0.1
2,348,760 + RR42_RS31060 0.37 -1.3
2,348,760 + RR42_RS31060 0.37 -0.7
2,348,760 + RR42_RS31060 0.37 +0.7
2,348,761 - RR42_RS31060 0.37 -0.1
2,348,761 - RR42_RS31060 0.37 +0.7
2,348,872 + RR42_RS31060 0.44 -0.6
2,348,872 + RR42_RS31060 0.44 -1.1
2,348,872 + RR42_RS31060 0.44 -0.7
2,348,873 - RR42_RS31060 0.44 -0.3
2,348,873 - RR42_RS31060 0.44 +0.2
2,349,006 + -0.3
2,349,041 + RR42_RS31060 0.55 +0.5
2,349,041 + RR42_RS31060 0.55 -1.1
2,349,071 + RR42_RS31060 0.57 +1.3

Or see this region's nucleotide sequence