Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24850

Experiment: a-Ketoglutaric (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS24845 and RR42_RS24850 overlap by 1 nucleotidesRR42_RS24850 and RR42_RS24855 are separated by 32 nucleotides RR42_RS24845: RR42_RS24845 - iditol 2-dehydrogenase, at 911,968 to 913,023 _RS24845 RR42_RS24850: RR42_RS24850 - alpha/beta hydrolase, at 913,023 to 913,943 _RS24850 RR42_RS24855: RR42_RS24855 - MFS transporter, at 913,976 to 915,304 _RS24855 Position (kb) 913 914Strain fitness (log2 ratio) -1 0 1at 912.055 kb on - strandat 912.241 kb on + strand, within RR42_RS24845at 912.729 kb on - strand, within RR42_RS24845at 912.896 kb on + strand, within RR42_RS24845at 912.896 kb on + strand, within RR42_RS24845at 913.091 kb on - strandat 913.100 kb on - strandat 913.355 kb on - strand, within RR42_RS24850at 913.525 kb on + strand, within RR42_RS24850at 913.526 kb on - strand, within RR42_RS24850at 913.526 kb on - strand, within RR42_RS24850at 913.692 kb on + strand, within RR42_RS24850at 913.712 kb on - strand, within RR42_RS24850at 913.858 kb on + strandat 913.993 kb on - strandat 914.085 kb on + strandat 914.231 kb on + strand, within RR42_RS24855at 914.232 kb on + strand, within RR42_RS24855at 914.233 kb on - strand, within RR42_RS24855at 914.459 kb on + strand, within RR42_RS24855at 914.646 kb on - strand, within RR42_RS24855at 914.646 kb on - strand, within RR42_RS24855at 914.749 kb on - strand, within RR42_RS24855at 914.914 kb on - strand, within RR42_RS24855

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
remove
912,055 - +0.0
912,241 + RR42_RS24845 0.26 -0.2
912,729 - RR42_RS24845 0.72 +1.0
912,896 + RR42_RS24845 0.88 +0.3
912,896 + RR42_RS24845 0.88 -0.0
913,091 - -1.6
913,100 - +1.4
913,355 - RR42_RS24850 0.36 +0.6
913,525 + RR42_RS24850 0.55 +0.9
913,526 - RR42_RS24850 0.55 +0.2
913,526 - RR42_RS24850 0.55 +0.3
913,692 + RR42_RS24850 0.73 +1.7
913,712 - RR42_RS24850 0.75 +0.7
913,858 + -0.0
913,993 - -0.6
914,085 + -0.7
914,231 + RR42_RS24855 0.19 -1.0
914,232 + RR42_RS24855 0.19 +0.0
914,233 - RR42_RS24855 0.19 -0.4
914,459 + RR42_RS24855 0.36 -0.6
914,646 - RR42_RS24855 0.50 +0.2
914,646 - RR42_RS24855 0.50 +0.2
914,749 - RR42_RS24855 0.58 -0.3
914,914 - RR42_RS24855 0.71 -0.2

Or see this region's nucleotide sequence