Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23490 and RR42_RS23495 are separated by 25 nucleotides RR42_RS23495 and RR42_RS23500 are separated by 59 nucleotides RR42_RS23500 and RR42_RS23505 are separated by 132 nucleotides
RR42_RS23490: RR42_RS23490 - NADH oxidase, at 596,157 to 597,176
_RS23490
RR42_RS23495: RR42_RS23495 - benzene 1,2-dioxygenase, at 597,202 to 597,684
_RS23495
RR42_RS23500: RR42_RS23500 - benzene 1,2-dioxygenase, at 597,744 to 599,132
_RS23500
RR42_RS23505: RR42_RS23505 - catechol 1,2-dioxygenase, at 599,265 to 600,179
_RS23505
Position (kb) 597
598
599
600 Strain fitness (log2 ratio) -2
-1
0
1 at 596.752 kb on + strand, within RR42_RS23490 at 596.752 kb on + strand, within RR42_RS23490 at 596.752 kb on + strand, within RR42_RS23490 at 596.752 kb on + strand, within RR42_RS23490 at 596.752 kb on + strand, within RR42_RS23490 at 596.753 kb on - strand, within RR42_RS23490 at 596.984 kb on + strand, within RR42_RS23490 at 596.985 kb on - strand, within RR42_RS23490 at 596.986 kb on + strand, within RR42_RS23490 at 596.987 kb on - strand, within RR42_RS23490 at 597.169 kb on + strand at 597.169 kb on + strand at 597.169 kb on + strand at 597.169 kb on + strand at 597.212 kb on + strand at 597.212 kb on + strand at 597.212 kb on + strand at 597.212 kb on + strand at 597.213 kb on - strand at 597.213 kb on - strand at 597.213 kb on - strand at 597.236 kb on + strand at 597.257 kb on + strand, within RR42_RS23495 at 597.303 kb on - strand, within RR42_RS23495 at 597.326 kb on + strand, within RR42_RS23495 at 597.327 kb on - strand, within RR42_RS23495 at 597.327 kb on - strand, within RR42_RS23495 at 597.599 kb on + strand, within RR42_RS23495 at 597.818 kb on - strand at 598.045 kb on + strand, within RR42_RS23500 at 598.102 kb on + strand, within RR42_RS23500 at 598.102 kb on + strand, within RR42_RS23500 at 598.339 kb on + strand, within RR42_RS23500 at 598.425 kb on - strand, within RR42_RS23500 at 598.425 kb on - strand, within RR42_RS23500 at 598.438 kb on + strand, within RR42_RS23500 at 598.514 kb on + strand, within RR42_RS23500 at 598.516 kb on + strand, within RR42_RS23500 at 598.516 kb on + strand, within RR42_RS23500 at 598.517 kb on - strand, within RR42_RS23500 at 598.517 kb on - strand, within RR42_RS23500 at 598.795 kb on + strand, within RR42_RS23500 at 598.796 kb on - strand, within RR42_RS23500 at 598.796 kb on - strand, within RR42_RS23500 at 598.918 kb on + strand, within RR42_RS23500 at 598.919 kb on - strand, within RR42_RS23500 at 598.927 kb on + strand, within RR42_RS23500 at 598.927 kb on + strand, within RR42_RS23500 at 598.928 kb on - strand, within RR42_RS23500 at 598.931 kb on - strand, within RR42_RS23500 at 598.931 kb on - strand, within RR42_RS23500 at 598.969 kb on + strand, within RR42_RS23500 at 598.969 kb on + strand, within RR42_RS23500 at 599.120 kb on - strand at 599.120 kb on - strand at 599.267 kb on - strand at 599.603 kb on - strand, within RR42_RS23505 at 599.603 kb on - strand, within RR42_RS23505 at 599.704 kb on + strand, within RR42_RS23505 at 599.704 kb on + strand, within RR42_RS23505 at 599.704 kb on + strand, within RR42_RS23505 at 599.705 kb on - strand, within RR42_RS23505 at 599.869 kb on + strand, within RR42_RS23505 at 599.869 kb on + strand, within RR42_RS23505 at 599.869 kb on + strand, within RR42_RS23505 at 599.870 kb on - strand, within RR42_RS23505 at 599.870 kb on - strand, within RR42_RS23505 at 599.870 kb on - strand, within RR42_RS23505 at 599.870 kb on - strand, within RR42_RS23505 at 599.870 kb on - strand, within RR42_RS23505 at 599.870 kb on - strand, within RR42_RS23505 at 599.870 kb on - strand, within RR42_RS23505 at 599.870 kb on - strand, within RR42_RS23505 at 600.010 kb on + strand, within RR42_RS23505
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 596,752 + RR42_RS23490 0.58 +0.5 596,752 + RR42_RS23490 0.58 -0.8 596,752 + RR42_RS23490 0.58 +0.8 596,752 + RR42_RS23490 0.58 +0.9 596,752 + RR42_RS23490 0.58 -0.9 596,753 - RR42_RS23490 0.58 +0.1 596,984 + RR42_RS23490 0.81 -0.5 596,985 - RR42_RS23490 0.81 +0.1 596,986 + RR42_RS23490 0.81 -1.2 596,987 - RR42_RS23490 0.81 +0.4 597,169 + +0.4 597,169 + +0.1 597,169 + +0.4 597,169 + -0.5 597,212 + -0.6 597,212 + +0.2 597,212 + +0.0 597,212 + +0.6 597,213 - +0.2 597,213 - +0.8 597,213 - -1.2 597,236 + -0.1 597,257 + RR42_RS23495 0.11 +0.1 597,303 - RR42_RS23495 0.21 +0.4 597,326 + RR42_RS23495 0.26 -0.6 597,327 - RR42_RS23495 0.26 +1.2 597,327 - RR42_RS23495 0.26 +0.3 597,599 + RR42_RS23495 0.82 +0.7 597,818 - -0.2 598,045 + RR42_RS23500 0.22 -0.4 598,102 + RR42_RS23500 0.26 +1.1 598,102 + RR42_RS23500 0.26 +0.1 598,339 + RR42_RS23500 0.43 -1.1 598,425 - RR42_RS23500 0.49 +0.8 598,425 - RR42_RS23500 0.49 -0.5 598,438 + RR42_RS23500 0.50 -0.3 598,514 + RR42_RS23500 0.55 +0.0 598,516 + RR42_RS23500 0.56 -0.5 598,516 + RR42_RS23500 0.56 -0.4 598,517 - RR42_RS23500 0.56 -1.3 598,517 - RR42_RS23500 0.56 +0.6 598,795 + RR42_RS23500 0.76 +0.3 598,796 - RR42_RS23500 0.76 +0.7 598,796 - RR42_RS23500 0.76 -0.5 598,918 + RR42_RS23500 0.85 +0.1 598,919 - RR42_RS23500 0.85 +1.1 598,927 + RR42_RS23500 0.85 -0.2 598,927 + RR42_RS23500 0.85 -0.1 598,928 - RR42_RS23500 0.85 -1.1 598,931 - RR42_RS23500 0.85 +1.1 598,931 - RR42_RS23500 0.85 -0.0 598,969 + RR42_RS23500 0.88 -0.5 598,969 + RR42_RS23500 0.88 -1.0 599,120 - -2.1 599,120 - -0.1 599,267 - +0.5 599,603 - RR42_RS23505 0.37 -0.1 599,603 - RR42_RS23505 0.37 +0.7 599,704 + RR42_RS23505 0.48 +0.4 599,704 + RR42_RS23505 0.48 -0.6 599,704 + RR42_RS23505 0.48 +0.6 599,705 - RR42_RS23505 0.48 +0.3 599,869 + RR42_RS23505 0.66 +0.4 599,869 + RR42_RS23505 0.66 -0.1 599,869 + RR42_RS23505 0.66 -1.1 599,870 - RR42_RS23505 0.66 +1.3 599,870 - RR42_RS23505 0.66 -0.8 599,870 - RR42_RS23505 0.66 +0.3 599,870 - RR42_RS23505 0.66 +0.5 599,870 - RR42_RS23505 0.66 -0.9 599,870 - RR42_RS23505 0.66 +0.2 599,870 - RR42_RS23505 0.66 -1.2 599,870 - RR42_RS23505 0.66 +0.1 600,010 + RR42_RS23505 0.81 +0.4
Or see this region's nucleotide sequence