Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22325

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22320 and RR42_RS22325 overlap by 4 nucleotidesRR42_RS22325 and RR42_RS22330 are separated by 31 nucleotidesRR42_RS22330 and RR42_RS22335 are separated by 414 nucleotides RR42_RS22320: RR42_RS22320 - MFS transporter, at 347,867 to 349,171 _RS22320 RR42_RS22325: RR42_RS22325 - hypothetical protein, at 349,168 to 350,265 _RS22325 RR42_RS22330: RR42_RS22330 - ester cyclase, at 350,297 to 350,800 _RS22330 RR42_RS22335: RR42_RS22335 - hemagglutinin, at 351,215 to 352,492 _RS22335 Position (kb) 349 350 351Strain fitness (log2 ratio) -2 -1 0 1at 348.354 kb on + strand, within RR42_RS22320at 348.354 kb on + strand, within RR42_RS22320at 348.354 kb on + strand, within RR42_RS22320at 348.355 kb on - strand, within RR42_RS22320at 348.355 kb on - strand, within RR42_RS22320at 348.355 kb on - strand, within RR42_RS22320at 348.685 kb on - strand, within RR42_RS22320at 348.732 kb on + strand, within RR42_RS22320at 348.750 kb on + strand, within RR42_RS22320at 348.750 kb on + strand, within RR42_RS22320at 348.750 kb on + strand, within RR42_RS22320at 348.751 kb on - strand, within RR42_RS22320at 348.808 kb on - strand, within RR42_RS22320at 348.808 kb on - strand, within RR42_RS22320at 348.939 kb on + strand, within RR42_RS22320at 348.940 kb on - strand, within RR42_RS22320at 349.044 kb on + strandat 349.045 kb on - strandat 349.056 kb on + strandat 349.056 kb on + strandat 349.056 kb on + strandat 349.056 kb on + strandat 349.056 kb on + strandat 349.056 kb on + strandat 349.057 kb on - strandat 349.057 kb on - strandat 349.068 kb on - strandat 349.355 kb on + strand, within RR42_RS22325at 349.355 kb on + strand, within RR42_RS22325at 349.355 kb on + strand, within RR42_RS22325at 349.355 kb on + strand, within RR42_RS22325at 349.356 kb on - strand, within RR42_RS22325at 349.380 kb on + strand, within RR42_RS22325at 349.465 kb on - strand, within RR42_RS22325at 349.517 kb on + strand, within RR42_RS22325at 349.647 kb on - strand, within RR42_RS22325at 349.787 kb on + strand, within RR42_RS22325at 349.787 kb on + strand, within RR42_RS22325at 349.788 kb on - strand, within RR42_RS22325at 349.788 kb on - strand, within RR42_RS22325at 349.788 kb on - strand, within RR42_RS22325at 349.797 kb on - strand, within RR42_RS22325at 349.878 kb on + strand, within RR42_RS22325at 349.879 kb on + strand, within RR42_RS22325at 349.914 kb on - strand, within RR42_RS22325at 350.051 kb on + strand, within RR42_RS22325at 350.051 kb on + strand, within RR42_RS22325at 350.051 kb on + strand, within RR42_RS22325at 350.069 kb on + strand, within RR42_RS22325at 350.070 kb on - strand, within RR42_RS22325at 350.299 kb on - strandat 350.622 kb on + strand, within RR42_RS22330at 350.622 kb on + strand, within RR42_RS22330at 350.623 kb on - strand, within RR42_RS22330at 350.623 kb on - strand, within RR42_RS22330at 350.679 kb on + strand, within RR42_RS22330at 350.679 kb on + strand, within RR42_RS22330at 350.871 kb on + strandat 350.872 kb on - strandat 351.001 kb on - strandat 351.005 kb on - strandat 351.064 kb on + strandat 351.155 kb on + strandat 351.156 kb on - strandat 351.159 kb on + strandat 351.159 kb on + strandat 351.230 kb on + strandat 351.241 kb on + strandat 351.242 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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348,354 + RR42_RS22320 0.37 -0.6
348,354 + RR42_RS22320 0.37 +0.5
348,354 + RR42_RS22320 0.37 -0.7
348,355 - RR42_RS22320 0.37 +0.4
348,355 - RR42_RS22320 0.37 +0.2
348,355 - RR42_RS22320 0.37 +0.7
348,685 - RR42_RS22320 0.63 +0.4
348,732 + RR42_RS22320 0.66 -0.2
348,750 + RR42_RS22320 0.68 -0.1
348,750 + RR42_RS22320 0.68 +0.2
348,750 + RR42_RS22320 0.68 +0.6
348,751 - RR42_RS22320 0.68 +0.4
348,808 - RR42_RS22320 0.72 -0.3
348,808 - RR42_RS22320 0.72 +0.6
348,939 + RR42_RS22320 0.82 -0.1
348,940 - RR42_RS22320 0.82 +0.3
349,044 + +1.0
349,045 - +0.8
349,056 + +0.1
349,056 + +0.5
349,056 + +0.2
349,056 + -0.9
349,056 + +0.1
349,056 + +0.1
349,057 - -0.2
349,057 - +0.2
349,068 - +1.4
349,355 + RR42_RS22325 0.17 -1.3
349,355 + RR42_RS22325 0.17 +0.3
349,355 + RR42_RS22325 0.17 +0.5
349,355 + RR42_RS22325 0.17 +1.2
349,356 - RR42_RS22325 0.17 +0.2
349,380 + RR42_RS22325 0.19 -0.9
349,465 - RR42_RS22325 0.27 +0.2
349,517 + RR42_RS22325 0.32 -0.5
349,647 - RR42_RS22325 0.44 -0.1
349,787 + RR42_RS22325 0.56 +0.1
349,787 + RR42_RS22325 0.56 -1.4
349,788 - RR42_RS22325 0.56 -0.3
349,788 - RR42_RS22325 0.56 -0.3
349,788 - RR42_RS22325 0.56 -2.0
349,797 - RR42_RS22325 0.57 +0.5
349,878 + RR42_RS22325 0.65 -1.4
349,879 + RR42_RS22325 0.65 +0.3
349,914 - RR42_RS22325 0.68 +0.3
350,051 + RR42_RS22325 0.80 -0.2
350,051 + RR42_RS22325 0.80 +0.3
350,051 + RR42_RS22325 0.80 +1.2
350,069 + RR42_RS22325 0.82 +1.0
350,070 - RR42_RS22325 0.82 +0.1
350,299 - -1.0
350,622 + RR42_RS22330 0.64 -0.2
350,622 + RR42_RS22330 0.64 +0.4
350,623 - RR42_RS22330 0.65 +0.4
350,623 - RR42_RS22330 0.65 -0.1
350,679 + RR42_RS22330 0.76 +0.7
350,679 + RR42_RS22330 0.76 +0.8
350,871 + -0.4
350,872 - -0.3
351,001 - +0.4
351,005 - -0.2
351,064 + -0.2
351,155 + +1.2
351,156 - -1.4
351,159 + -0.2
351,159 + +0.2
351,230 + +0.7
351,241 + -0.0
351,242 - -1.7

Or see this region's nucleotide sequence