Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01240 and RR42_RS01245 are separated by 52 nucleotides RR42_RS01245 and RR42_RS01250 are separated by 48 nucleotides
RR42_RS01240: RR42_RS01240 - membrane protein, at 280,383 to 281,735
_RS01240
RR42_RS01245: RR42_RS01245 - polyphosphate kinase, at 281,788 to 282,597
_RS01245
RR42_RS01250: RR42_RS01250 - diaminopimelate epimerase, at 282,646 to 283,512
_RS01250
Position (kb) 281
282
283 Strain fitness (log2 ratio) -1
0
1
2 at 280.788 kb on + strand, within RR42_RS01240 at 280.789 kb on - strand, within RR42_RS01240 at 280.789 kb on - strand, within RR42_RS01240 at 280.827 kb on + strand, within RR42_RS01240 at 280.992 kb on + strand, within RR42_RS01240 at 280.992 kb on + strand, within RR42_RS01240 at 280.995 kb on + strand, within RR42_RS01240 at 280.995 kb on + strand, within RR42_RS01240 at 281.000 kb on + strand, within RR42_RS01240 at 281.000 kb on + strand, within RR42_RS01240 at 281.000 kb on + strand, within RR42_RS01240 at 281.000 kb on + strand, within RR42_RS01240 at 281.000 kb on + strand, within RR42_RS01240 at 281.119 kb on - strand, within RR42_RS01240 at 281.218 kb on - strand, within RR42_RS01240 at 281.376 kb on + strand, within RR42_RS01240 at 281.377 kb on - strand, within RR42_RS01240 at 281.387 kb on + strand, within RR42_RS01240 at 281.406 kb on + strand, within RR42_RS01240 at 281.407 kb on - strand, within RR42_RS01240 at 281.407 kb on - strand, within RR42_RS01240 at 281.407 kb on - strand, within RR42_RS01240 at 281.407 kb on - strand, within RR42_RS01240 at 281.508 kb on + strand, within RR42_RS01240 at 281.509 kb on - strand, within RR42_RS01240 at 281.509 kb on - strand, within RR42_RS01240 at 281.832 kb on - strand at 281.918 kb on + strand, within RR42_RS01245 at 281.918 kb on + strand, within RR42_RS01245 at 281.918 kb on + strand, within RR42_RS01245 at 281.919 kb on - strand, within RR42_RS01245 at 281.919 kb on - strand, within RR42_RS01245 at 281.961 kb on + strand, within RR42_RS01245 at 281.964 kb on - strand, within RR42_RS01245 at 281.964 kb on - strand, within RR42_RS01245 at 282.145 kb on + strand, within RR42_RS01245 at 282.156 kb on - strand, within RR42_RS01245 at 282.284 kb on + strand, within RR42_RS01245 at 282.440 kb on + strand, within RR42_RS01245 at 282.440 kb on + strand, within RR42_RS01245 at 282.642 kb on - strand at 283.523 kb on + strand at 283.523 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 280,788 + RR42_RS01240 0.30 +0.3 280,789 - RR42_RS01240 0.30 +0.3 280,789 - RR42_RS01240 0.30 +1.0 280,827 + RR42_RS01240 0.33 +0.2 280,992 + RR42_RS01240 0.45 -0.2 280,992 + RR42_RS01240 0.45 +0.3 280,995 + RR42_RS01240 0.45 +0.3 280,995 + RR42_RS01240 0.45 +0.7 281,000 + RR42_RS01240 0.46 -0.7 281,000 + RR42_RS01240 0.46 +0.2 281,000 + RR42_RS01240 0.46 +2.1 281,000 + RR42_RS01240 0.46 +0.6 281,000 + RR42_RS01240 0.46 -0.1 281,119 - RR42_RS01240 0.54 +0.3 281,218 - RR42_RS01240 0.62 +0.2 281,376 + RR42_RS01240 0.73 +0.4 281,377 - RR42_RS01240 0.73 -1.0 281,387 + RR42_RS01240 0.74 +0.5 281,406 + RR42_RS01240 0.76 +0.1 281,407 - RR42_RS01240 0.76 -0.1 281,407 - RR42_RS01240 0.76 +0.1 281,407 - RR42_RS01240 0.76 +0.7 281,407 - RR42_RS01240 0.76 +0.2 281,508 + RR42_RS01240 0.83 +0.7 281,509 - RR42_RS01240 0.83 +0.1 281,509 - RR42_RS01240 0.83 +1.4 281,832 - -0.2 281,918 + RR42_RS01245 0.16 -0.5 281,918 + RR42_RS01245 0.16 -0.1 281,918 + RR42_RS01245 0.16 +0.1 281,919 - RR42_RS01245 0.16 +0.8 281,919 - RR42_RS01245 0.16 -0.1 281,961 + RR42_RS01245 0.21 -0.6 281,964 - RR42_RS01245 0.22 +0.5 281,964 - RR42_RS01245 0.22 -0.7 282,145 + RR42_RS01245 0.44 +1.8 282,156 - RR42_RS01245 0.45 +0.1 282,284 + RR42_RS01245 0.61 -0.0 282,440 + RR42_RS01245 0.80 -1.0 282,440 + RR42_RS01245 0.80 -0.3 282,642 - -0.7 283,523 + -0.6 283,523 + -0.2
Or see this region's nucleotide sequence