Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00310

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00305 and RR42_RS00310 are separated by 137 nucleotidesRR42_RS00310 and RR42_RS00315 are separated by 43 nucleotidesRR42_RS00315 and RR42_RS00320 are separated by 256 nucleotides RR42_RS00305: RR42_RS00305 - hypothetical protein, at 87,009 to 88,082 _RS00305 RR42_RS00310: RR42_RS00310 - TetR family transcriptional regulator, at 88,220 to 88,888 _RS00310 RR42_RS00315: RR42_RS00315 - iron-binding protein, at 88,932 to 89,579 _RS00315 RR42_RS00320: RR42_RS00320 - histidine kinase, at 89,836 to 90,285 _RS00320 Position (kb) 88 89Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 87.232 kb on + strand, within RR42_RS00305at 87.232 kb on + strand, within RR42_RS00305at 87.310 kb on + strand, within RR42_RS00305at 87.311 kb on - strand, within RR42_RS00305at 87.379 kb on + strand, within RR42_RS00305at 87.379 kb on + strand, within RR42_RS00305at 87.380 kb on - strand, within RR42_RS00305at 87.380 kb on - strand, within RR42_RS00305at 87.380 kb on - strand, within RR42_RS00305at 87.380 kb on - strand, within RR42_RS00305at 87.380 kb on - strand, within RR42_RS00305at 87.422 kb on - strand, within RR42_RS00305at 87.440 kb on - strand, within RR42_RS00305at 87.482 kb on + strand, within RR42_RS00305at 87.482 kb on + strand, within RR42_RS00305at 87.483 kb on - strand, within RR42_RS00305at 87.644 kb on - strand, within RR42_RS00305at 87.703 kb on + strand, within RR42_RS00305at 87.703 kb on + strand, within RR42_RS00305at 87.703 kb on + strand, within RR42_RS00305at 87.704 kb on - strand, within RR42_RS00305at 87.712 kb on + strand, within RR42_RS00305at 87.751 kb on + strand, within RR42_RS00305at 87.752 kb on - strand, within RR42_RS00305at 87.752 kb on - strand, within RR42_RS00305at 87.752 kb on - strand, within RR42_RS00305at 87.791 kb on + strand, within RR42_RS00305at 87.792 kb on - strand, within RR42_RS00305at 87.811 kb on + strand, within RR42_RS00305at 87.818 kb on - strand, within RR42_RS00305at 87.818 kb on - strand, within RR42_RS00305at 87.888 kb on - strand, within RR42_RS00305at 87.928 kb on + strand, within RR42_RS00305at 87.955 kb on + strand, within RR42_RS00305at 87.956 kb on - strand, within RR42_RS00305at 88.060 kb on - strandat 88.060 kb on - strandat 88.232 kb on + strandat 88.233 kb on - strandat 88.355 kb on + strand, within RR42_RS00310at 88.356 kb on - strand, within RR42_RS00310at 88.356 kb on - strand, within RR42_RS00310at 88.457 kb on + strand, within RR42_RS00310at 88.457 kb on + strand, within RR42_RS00310at 88.457 kb on + strand, within RR42_RS00310at 88.491 kb on - strand, within RR42_RS00310at 88.491 kb on - strand, within RR42_RS00310at 88.491 kb on - strand, within RR42_RS00310at 88.704 kb on - strand, within RR42_RS00310at 88.704 kb on - strand, within RR42_RS00310at 88.704 kb on - strand, within RR42_RS00310at 88.704 kb on - strand, within RR42_RS00310at 88.916 kb on - strandat 88.925 kb on - strandat 88.933 kb on + strandat 88.933 kb on + strandat 88.933 kb on + strandat 88.934 kb on - strandat 88.934 kb on - strandat 88.935 kb on + strandat 88.935 kb on + strandat 88.935 kb on + strandat 88.936 kb on - strandat 88.936 kb on - strandat 89.117 kb on + strand, within RR42_RS00315at 89.117 kb on + strand, within RR42_RS00315at 89.118 kb on - strand, within RR42_RS00315at 89.121 kb on + strand, within RR42_RS00315at 89.121 kb on + strand, within RR42_RS00315at 89.467 kb on - strand, within RR42_RS00315at 89.467 kb on - strand, within RR42_RS00315at 89.629 kb on + strandat 89.630 kb on - strandat 89.630 kb on - strandat 89.631 kb on + strandat 89.631 kb on + strandat 89.632 kb on - strandat 89.681 kb on + strandat 89.682 kb on - strandat 89.682 kb on - strandat 89.707 kb on + strandat 89.708 kb on - strandat 89.728 kb on + strandat 89.728 kb on + strandat 89.729 kb on - strandat 89.729 kb on - strandat 89.729 kb on - strandat 89.729 kb on - strandat 89.729 kb on - strandat 89.881 kb on - strand, within RR42_RS00320at 89.881 kb on - strand, within RR42_RS00320at 89.881 kb on - strand, within RR42_RS00320at 89.881 kb on - strand, within RR42_RS00320at 89.881 kb on - strand, within RR42_RS00320at 89.884 kb on + strand, within RR42_RS00320at 89.884 kb on + strand, within RR42_RS00320at 89.884 kb on + strand, within RR42_RS00320at 89.884 kb on + strand, within RR42_RS00320at 89.885 kb on - strand, within RR42_RS00320at 89.885 kb on - strand, within RR42_RS00320at 89.885 kb on - strand, within RR42_RS00320at 89.885 kb on - strand, within RR42_RS00320at 89.885 kb on - strand, within RR42_RS00320at 89.885 kb on - strand, within RR42_RS00320at 89.885 kb on - strand, within RR42_RS00320at 89.885 kb on - strand, within RR42_RS00320

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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87,232 + RR42_RS00305 0.21 -0.3
87,232 + RR42_RS00305 0.21 -0.7
87,310 + RR42_RS00305 0.28 -0.8
87,311 - RR42_RS00305 0.28 +0.2
87,379 + RR42_RS00305 0.34 -0.5
87,379 + RR42_RS00305 0.34 +1.3
87,380 - RR42_RS00305 0.35 +0.8
87,380 - RR42_RS00305 0.35 -1.1
87,380 - RR42_RS00305 0.35 -0.3
87,380 - RR42_RS00305 0.35 -0.5
87,380 - RR42_RS00305 0.35 -0.6
87,422 - RR42_RS00305 0.38 -1.1
87,440 - RR42_RS00305 0.40 +0.8
87,482 + RR42_RS00305 0.44 +0.8
87,482 + RR42_RS00305 0.44 +0.2
87,483 - RR42_RS00305 0.44 -0.0
87,644 - RR42_RS00305 0.59 +0.0
87,703 + RR42_RS00305 0.65 +0.3
87,703 + RR42_RS00305 0.65 -0.8
87,703 + RR42_RS00305 0.65 -1.0
87,704 - RR42_RS00305 0.65 +0.2
87,712 + RR42_RS00305 0.65 -1.3
87,751 + RR42_RS00305 0.69 +0.2
87,752 - RR42_RS00305 0.69 +0.3
87,752 - RR42_RS00305 0.69 +0.2
87,752 - RR42_RS00305 0.69 -1.1
87,791 + RR42_RS00305 0.73 -0.8
87,792 - RR42_RS00305 0.73 +0.7
87,811 + RR42_RS00305 0.75 +0.4
87,818 - RR42_RS00305 0.75 -2.5
87,818 - RR42_RS00305 0.75 -0.3
87,888 - RR42_RS00305 0.82 -0.4
87,928 + RR42_RS00305 0.86 +0.3
87,955 + RR42_RS00305 0.88 +0.1
87,956 - RR42_RS00305 0.88 +0.3
88,060 - +0.2
88,060 - -0.8
88,232 + +0.5
88,233 - -0.1
88,355 + RR42_RS00310 0.20 +0.6
88,356 - RR42_RS00310 0.20 +0.1
88,356 - RR42_RS00310 0.20 -0.3
88,457 + RR42_RS00310 0.35 -0.4
88,457 + RR42_RS00310 0.35 +0.4
88,457 + RR42_RS00310 0.35 +0.0
88,491 - RR42_RS00310 0.41 +0.1
88,491 - RR42_RS00310 0.41 +0.1
88,491 - RR42_RS00310 0.41 -1.6
88,704 - RR42_RS00310 0.72 +0.6
88,704 - RR42_RS00310 0.72 -0.9
88,704 - RR42_RS00310 0.72 -0.8
88,704 - RR42_RS00310 0.72 +0.4
88,916 - -0.1
88,925 - -0.4
88,933 + -1.7
88,933 + -0.1
88,933 + -0.1
88,934 - -0.5
88,934 - -2.1
88,935 + +0.2
88,935 + +0.8
88,935 + +2.1
88,936 - +0.7
88,936 - +0.3
89,117 + RR42_RS00315 0.29 -1.0
89,117 + RR42_RS00315 0.29 -0.8
89,118 - RR42_RS00315 0.29 -0.5
89,121 + RR42_RS00315 0.29 +0.5
89,121 + RR42_RS00315 0.29 +0.1
89,467 - RR42_RS00315 0.83 -0.7
89,467 - RR42_RS00315 0.83 -0.4
89,629 + -0.1
89,630 - +1.0
89,630 - -0.4
89,631 + -0.6
89,631 + -0.3
89,632 - +0.5
89,681 + -0.8
89,682 - -0.5
89,682 - +0.6
89,707 + -0.5
89,708 - -2.2
89,728 + +1.1
89,728 + -0.7
89,729 - -0.3
89,729 - -0.4
89,729 - -0.2
89,729 - +0.1
89,729 - -0.1
89,881 - RR42_RS00320 0.10 -0.2
89,881 - RR42_RS00320 0.10 +1.0
89,881 - RR42_RS00320 0.10 -3.0
89,881 - RR42_RS00320 0.10 -2.0
89,881 - RR42_RS00320 0.10 +0.6
89,884 + RR42_RS00320 0.11 -1.8
89,884 + RR42_RS00320 0.11 +0.3
89,884 + RR42_RS00320 0.11 -0.8
89,884 + RR42_RS00320 0.11 -0.3
89,885 - RR42_RS00320 0.11 +1.3
89,885 - RR42_RS00320 0.11 +1.1
89,885 - RR42_RS00320 0.11 -1.0
89,885 - RR42_RS00320 0.11 -0.3
89,885 - RR42_RS00320 0.11 -1.0
89,885 - RR42_RS00320 0.11 +0.1
89,885 - RR42_RS00320 0.11 -0.3
89,885 - RR42_RS00320 0.11 +0.9

Or see this region's nucleotide sequence