Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04530

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 Vitamin & Casamino Acid FREE

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMJJ_RS04520 and MMJJ_RS04525 are separated by 81 nucleotidesMMJJ_RS04525 and MMJJ_RS04530 are separated by 2 nucleotidesMMJJ_RS04530 and MMJJ_RS04535 are separated by 3 nucleotidesMMJJ_RS04535 and MMJJ_RS04540 are separated by 21 nucleotides MMJJ_RS04520: MMJJ_RS04520 - coenzyme F430 synthase, at 843,922 to 845,124 _RS04520 MMJJ_RS04525: MMJJ_RS04525 - hypothetical protein, at 845,206 to 845,490 _RS04525 MMJJ_RS04530: MMJJ_RS04530 - iron export ABC transporter permease subunit FetB, at 845,493 to 846,239 _RS04530 MMJJ_RS04535: MMJJ_RS04535 - coenzyme gamma-F420-2:alpha-L-glutamate ligase, at 846,243 to 847,100 _RS04535 MMJJ_RS04540: MMJJ_RS04540 - site-2 protease family protein, at 847,122 to 848,249 _RS04540 Position (kb) 845 846 847Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 844.558 kb on + strand, within MMJJ_RS04520at 844.575 kb on + strand, within MMJJ_RS04520at 844.690 kb on - strand, within MMJJ_RS04520at 844.729 kb on + strand, within MMJJ_RS04520at 844.732 kb on + strand, within MMJJ_RS04520at 844.786 kb on + strand, within MMJJ_RS04520at 844.935 kb on + strand, within MMJJ_RS04520at 845.092 kb on - strandat 845.147 kb on + strandat 845.163 kb on - strandat 845.213 kb on - strandat 845.213 kb on - strandat 845.213 kb on - strandat 845.213 kb on - strandat 845.213 kb on - strandat 845.213 kb on - strandat 845.214 kb on + strandat 845.214 kb on + strandat 845.214 kb on + strandat 845.228 kb on - strandat 845.231 kb on - strandat 845.231 kb on - strandat 845.231 kb on - strandat 845.232 kb on + strandat 845.236 kb on + strand, within MMJJ_RS04525at 845.238 kb on - strand, within MMJJ_RS04525at 845.238 kb on - strand, within MMJJ_RS04525at 845.239 kb on + strand, within MMJJ_RS04525at 845.359 kb on + strand, within MMJJ_RS04525at 845.385 kb on - strand, within MMJJ_RS04525at 845.468 kb on - strandat 845.513 kb on - strandat 845.514 kb on + strandat 845.525 kb on + strandat 845.533 kb on - strandat 845.561 kb on - strandat 845.562 kb on + strandat 845.585 kb on - strand, within MMJJ_RS04530at 845.585 kb on - strand, within MMJJ_RS04530at 845.585 kb on - strand, within MMJJ_RS04530at 845.585 kb on - strand, within MMJJ_RS04530at 845.585 kb on - strand, within MMJJ_RS04530at 845.586 kb on + strand, within MMJJ_RS04530at 845.586 kb on + strand, within MMJJ_RS04530at 845.586 kb on + strand, within MMJJ_RS04530at 845.590 kb on + strand, within MMJJ_RS04530at 845.611 kb on + strand, within MMJJ_RS04530at 845.657 kb on - strand, within MMJJ_RS04530at 845.658 kb on + strand, within MMJJ_RS04530at 845.689 kb on + strand, within MMJJ_RS04530at 845.733 kb on + strand, within MMJJ_RS04530at 845.826 kb on - strand, within MMJJ_RS04530at 845.828 kb on - strand, within MMJJ_RS04530at 845.829 kb on + strand, within MMJJ_RS04530at 845.877 kb on - strand, within MMJJ_RS04530at 845.878 kb on + strand, within MMJJ_RS04530at 845.895 kb on - strand, within MMJJ_RS04530at 845.895 kb on - strand, within MMJJ_RS04530at 845.895 kb on - strand, within MMJJ_RS04530at 845.946 kb on + strand, within MMJJ_RS04530at 845.970 kb on - strand, within MMJJ_RS04530at 845.970 kb on - strand, within MMJJ_RS04530at 845.970 kb on - strand, within MMJJ_RS04530at 845.973 kb on - strand, within MMJJ_RS04530at 846.039 kb on - strand, within MMJJ_RS04530at 846.040 kb on + strand, within MMJJ_RS04530at 846.043 kb on + strand, within MMJJ_RS04530at 846.043 kb on + strand, within MMJJ_RS04530at 846.047 kb on - strand, within MMJJ_RS04530at 846.047 kb on - strand, within MMJJ_RS04530at 846.048 kb on + strand, within MMJJ_RS04530at 846.074 kb on - strand, within MMJJ_RS04530at 846.141 kb on - strand, within MMJJ_RS04530at 846.142 kb on + strand, within MMJJ_RS04530at 846.180 kb on - strandat 846.180 kb on - strandat 846.262 kb on + strandat 846.349 kb on - strand, within MMJJ_RS04535at 846.349 kb on - strand, within MMJJ_RS04535at 846.350 kb on + strand, within MMJJ_RS04535at 846.350 kb on + strand, within MMJJ_RS04535at 846.350 kb on + strand, within MMJJ_RS04535at 846.352 kb on - strand, within MMJJ_RS04535at 846.352 kb on - strand, within MMJJ_RS04535at 846.353 kb on + strand, within MMJJ_RS04535at 846.389 kb on - strand, within MMJJ_RS04535at 846.389 kb on - strand, within MMJJ_RS04535at 846.389 kb on - strand, within MMJJ_RS04535at 846.390 kb on + strand, within MMJJ_RS04535at 846.390 kb on + strand, within MMJJ_RS04535at 846.390 kb on + strand, within MMJJ_RS04535at 846.444 kb on - strand, within MMJJ_RS04535at 846.445 kb on + strand, within MMJJ_RS04535at 846.475 kb on - strand, within MMJJ_RS04535at 846.475 kb on - strand, within MMJJ_RS04535at 846.475 kb on - strand, within MMJJ_RS04535at 846.476 kb on + strand, within MMJJ_RS04535at 846.477 kb on - strand, within MMJJ_RS04535at 846.477 kb on - strand, within MMJJ_RS04535at 846.477 kb on - strand, within MMJJ_RS04535at 846.477 kb on - strand, within MMJJ_RS04535at 846.477 kb on - strand, within MMJJ_RS04535at 846.478 kb on + strand, within MMJJ_RS04535at 846.478 kb on + strand, within MMJJ_RS04535at 846.478 kb on + strand, within MMJJ_RS04535at 846.478 kb on + strand, within MMJJ_RS04535at 846.494 kb on - strand, within MMJJ_RS04535at 846.497 kb on - strand, within MMJJ_RS04535at 846.551 kb on - strand, within MMJJ_RS04535at 846.559 kb on - strand, within MMJJ_RS04535at 846.559 kb on - strand, within MMJJ_RS04535at 846.559 kb on - strand, within MMJJ_RS04535at 846.559 kb on - strand, within MMJJ_RS04535at 846.559 kb on - strand, within MMJJ_RS04535at 846.560 kb on + strand, within MMJJ_RS04535at 846.560 kb on + strand, within MMJJ_RS04535at 846.560 kb on + strand, within MMJJ_RS04535at 846.560 kb on + strand, within MMJJ_RS04535at 846.560 kb on + strand, within MMJJ_RS04535at 846.587 kb on + strand, within MMJJ_RS04535at 846.637 kb on + strand, within MMJJ_RS04535at 846.699 kb on - strand, within MMJJ_RS04535at 846.714 kb on - strand, within MMJJ_RS04535at 846.834 kb on + strand, within MMJJ_RS04535at 846.888 kb on - strand, within MMJJ_RS04535at 846.918 kb on + strand, within MMJJ_RS04535at 846.952 kb on + strand, within MMJJ_RS04535at 846.952 kb on + strand, within MMJJ_RS04535at 846.955 kb on + strand, within MMJJ_RS04535at 846.967 kb on + strand, within MMJJ_RS04535at 847.017 kb on + strandat 847.020 kb on + strandat 847.060 kb on - strandat 847.060 kb on - strandat 847.060 kb on - strandat 847.061 kb on + strandat 847.062 kb on - strandat 847.063 kb on + strandat 847.063 kb on + strandat 847.096 kb on + strandat 847.136 kb on + strandat 847.149 kb on - strandat 847.150 kb on + strandat 847.152 kb on - strandat 847.153 kb on + strandat 847.164 kb on - strandat 847.164 kb on - strandat 847.170 kb on - strandat 847.170 kb on - strandat 847.171 kb on + strandat 847.171 kb on + strandat 847.171 kb on + strandat 847.172 kb on - strandat 847.172 kb on - strandat 847.172 kb on - strandat 847.172 kb on - strandat 847.173 kb on + strandat 847.173 kb on + strandat 847.173 kb on + strandat 847.173 kb on + strandat 847.173 kb on + strandat 847.199 kb on - strandat 847.203 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 Vitamin & Casamino Acid FREE
remove
844,558 + MMJJ_RS04520 0.53 -2.1
844,575 + MMJJ_RS04520 0.54 -2.3
844,690 - MMJJ_RS04520 0.64 -1.9
844,729 + MMJJ_RS04520 0.67 -0.5
844,732 + MMJJ_RS04520 0.67 -2.7
844,786 + MMJJ_RS04520 0.72 -0.5
844,935 + MMJJ_RS04520 0.84 -2.9
845,092 - -1.1
845,147 + +0.2
845,163 - +3.9
845,213 - -1.8
845,213 - -0.6
845,213 - +2.3
845,213 - +1.6
845,213 - +0.5
845,213 - -1.6
845,214 + +1.6
845,214 + +0.0
845,214 + -0.9
845,228 - -1.3
845,231 - -1.9
845,231 - -1.3
845,231 - -1.2
845,232 + +1.2
845,236 + MMJJ_RS04525 0.11 +0.7
845,238 - MMJJ_RS04525 0.11 +1.1
845,238 - MMJJ_RS04525 0.11 +1.1
845,239 + MMJJ_RS04525 0.12 +1.1
845,359 + MMJJ_RS04525 0.54 +1.0
845,385 - MMJJ_RS04525 0.63 +1.8
845,468 - +1.3
845,513 - +2.3
845,514 + -0.1
845,525 + +0.3
845,533 - +0.7
845,561 - -0.5
845,562 + -1.9
845,585 - MMJJ_RS04530 0.12 -0.7
845,585 - MMJJ_RS04530 0.12 -3.3
845,585 - MMJJ_RS04530 0.12 +1.2
845,585 - MMJJ_RS04530 0.12 -0.7
845,585 - MMJJ_RS04530 0.12 -2.9
845,586 + MMJJ_RS04530 0.12 -3.1
845,586 + MMJJ_RS04530 0.12 -0.3
845,586 + MMJJ_RS04530 0.12 +2.1
845,590 + MMJJ_RS04530 0.13 -0.1
845,611 + MMJJ_RS04530 0.16 -3.3
845,657 - MMJJ_RS04530 0.22 -3.9
845,658 + MMJJ_RS04530 0.22 -0.7
845,689 + MMJJ_RS04530 0.26 -1.6
845,733 + MMJJ_RS04530 0.32 -1.9
845,826 - MMJJ_RS04530 0.45 -2.5
845,828 - MMJJ_RS04530 0.45 -0.0
845,829 + MMJJ_RS04530 0.45 -2.7
845,877 - MMJJ_RS04530 0.51 -3.3
845,878 + MMJJ_RS04530 0.52 +0.3
845,895 - MMJJ_RS04530 0.54 -4.1
845,895 - MMJJ_RS04530 0.54 -3.4
845,895 - MMJJ_RS04530 0.54 -1.6
845,946 + MMJJ_RS04530 0.61 +2.4
845,970 - MMJJ_RS04530 0.64 -1.8
845,970 - MMJJ_RS04530 0.64 -2.3
845,970 - MMJJ_RS04530 0.64 +0.4
845,973 - MMJJ_RS04530 0.64 -0.7
846,039 - MMJJ_RS04530 0.73 +0.2
846,040 + MMJJ_RS04530 0.73 -2.3
846,043 + MMJJ_RS04530 0.74 +1.2
846,043 + MMJJ_RS04530 0.74 -2.9
846,047 - MMJJ_RS04530 0.74 -1.7
846,047 - MMJJ_RS04530 0.74 +0.9
846,048 + MMJJ_RS04530 0.74 -2.1
846,074 - MMJJ_RS04530 0.78 -2.9
846,141 - MMJJ_RS04530 0.87 +1.2
846,142 + MMJJ_RS04530 0.87 -4.0
846,180 - +0.5
846,180 - -3.0
846,262 + +2.1
846,349 - MMJJ_RS04535 0.12 +0.8
846,349 - MMJJ_RS04535 0.12 -2.8
846,350 + MMJJ_RS04535 0.12 -2.7
846,350 + MMJJ_RS04535 0.12 +1.5
846,350 + MMJJ_RS04535 0.12 -3.3
846,352 - MMJJ_RS04535 0.13 -2.7
846,352 - MMJJ_RS04535 0.13 -1.9
846,353 + MMJJ_RS04535 0.13 -3.0
846,389 - MMJJ_RS04535 0.17 +2.0
846,389 - MMJJ_RS04535 0.17 -2.8
846,389 - MMJJ_RS04535 0.17 -0.8
846,390 + MMJJ_RS04535 0.17 -0.4
846,390 + MMJJ_RS04535 0.17 -0.9
846,390 + MMJJ_RS04535 0.17 -4.6
846,444 - MMJJ_RS04535 0.23 -1.5
846,445 + MMJJ_RS04535 0.24 +1.7
846,475 - MMJJ_RS04535 0.27 +0.9
846,475 - MMJJ_RS04535 0.27 +0.3
846,475 - MMJJ_RS04535 0.27 +0.2
846,476 + MMJJ_RS04535 0.27 +2.1
846,477 - MMJJ_RS04535 0.27 -3.8
846,477 - MMJJ_RS04535 0.27 -1.4
846,477 - MMJJ_RS04535 0.27 +1.2
846,477 - MMJJ_RS04535 0.27 -0.3
846,477 - MMJJ_RS04535 0.27 -1.7
846,478 + MMJJ_RS04535 0.27 -0.2
846,478 + MMJJ_RS04535 0.27 -2.6
846,478 + MMJJ_RS04535 0.27 +0.1
846,478 + MMJJ_RS04535 0.27 +1.5
846,494 - MMJJ_RS04535 0.29 +3.2
846,497 - MMJJ_RS04535 0.30 +1.5
846,551 - MMJJ_RS04535 0.36 -2.8
846,559 - MMJJ_RS04535 0.37 -2.4
846,559 - MMJJ_RS04535 0.37 +0.5
846,559 - MMJJ_RS04535 0.37 -2.0
846,559 - MMJJ_RS04535 0.37 -4.0
846,559 - MMJJ_RS04535 0.37 +0.4
846,560 + MMJJ_RS04535 0.37 -3.2
846,560 + MMJJ_RS04535 0.37 -3.8
846,560 + MMJJ_RS04535 0.37 +0.5
846,560 + MMJJ_RS04535 0.37 +2.0
846,560 + MMJJ_RS04535 0.37 -0.0
846,587 + MMJJ_RS04535 0.40 +0.5
846,637 + MMJJ_RS04535 0.46 +0.7
846,699 - MMJJ_RS04535 0.53 -0.9
846,714 - MMJJ_RS04535 0.55 +0.9
846,834 + MMJJ_RS04535 0.69 -0.1
846,888 - MMJJ_RS04535 0.75 -0.5
846,918 + MMJJ_RS04535 0.79 -2.7
846,952 + MMJJ_RS04535 0.83 +0.3
846,952 + MMJJ_RS04535 0.83 -4.5
846,955 + MMJJ_RS04535 0.83 +2.5
846,967 + MMJJ_RS04535 0.84 +0.4
847,017 + +1.7
847,020 + -0.2
847,060 - +0.5
847,060 - +1.0
847,060 - -0.8
847,061 + -1.7
847,062 - -3.0
847,063 + -4.6
847,063 + -3.2
847,096 + -4.5
847,136 + +0.5
847,149 - -3.3
847,150 + +3.1
847,152 - -1.1
847,153 + -0.8
847,164 - +1.2
847,164 - -2.0
847,170 - -3.0
847,170 - -1.6
847,171 + -1.5
847,171 + -0.5
847,171 + -1.4
847,172 - -1.5
847,172 - +0.4
847,172 - -0.5
847,172 - -1.0
847,173 + -3.4
847,173 + +0.2
847,173 + -2.3
847,173 + +0.5
847,173 + +0.8
847,199 - -2.3
847,203 - +1.0

Or see this region's nucleotide sequence