Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00955

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 Vitamin & Casamino Acid FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS00945 and MMJJ_RS00950 are separated by 104 nucleotidesMMJJ_RS00950 and MMJJ_RS00955 are separated by 30 nucleotidesMMJJ_RS00955 and MMJJ_RS00960 are separated by 57 nucleotides MMJJ_RS00945: MMJJ_RS00945 - carboxymuconolactone decarboxylase family protein, at 183,232 to 183,963 _RS00945 MMJJ_RS00950: MMJJ_RS00950 - DUF111 family protein, at 184,068 to 184,787 _RS00950 MMJJ_RS00955: MMJJ_RS00955 - flavodoxin, at 184,818 to 185,353 _RS00955 MMJJ_RS00960: MMJJ_RS00960 - flavodoxin family protein, at 185,411 to 186,046 _RS00960 Position (kb) 184 185 186Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 183.861 kb on - strand, within MMJJ_RS00945at 183.862 kb on + strand, within MMJJ_RS00945at 183.914 kb on + strandat 183.918 kb on - strandat 183.918 kb on - strandat 183.964 kb on + strandat 184.025 kb on - strandat 184.028 kb on - strandat 184.028 kb on - strandat 184.029 kb on + strandat 184.029 kb on + strandat 184.031 kb on + strandat 184.037 kb on - strandat 184.046 kb on + strandat 184.046 kb on + strandat 184.046 kb on + strandat 184.053 kb on + strandat 184.099 kb on + strandat 184.148 kb on - strand, within MMJJ_RS00950at 184.211 kb on - strand, within MMJJ_RS00950at 184.358 kb on + strand, within MMJJ_RS00950at 184.554 kb on - strand, within MMJJ_RS00950at 184.555 kb on + strand, within MMJJ_RS00950at 184.556 kb on - strand, within MMJJ_RS00950at 184.556 kb on - strand, within MMJJ_RS00950at 184.557 kb on + strand, within MMJJ_RS00950at 184.557 kb on + strand, within MMJJ_RS00950at 184.563 kb on - strand, within MMJJ_RS00950at 184.577 kb on + strand, within MMJJ_RS00950at 184.743 kb on + strandat 184.775 kb on - strandat 184.830 kb on - strandat 184.935 kb on + strand, within MMJJ_RS00955at 184.973 kb on - strand, within MMJJ_RS00955at 184.985 kb on - strand, within MMJJ_RS00955at 185.008 kb on - strand, within MMJJ_RS00955at 185.024 kb on - strand, within MMJJ_RS00955at 185.024 kb on - strand, within MMJJ_RS00955at 185.068 kb on + strand, within MMJJ_RS00955at 185.073 kb on - strand, within MMJJ_RS00955at 185.074 kb on + strand, within MMJJ_RS00955at 185.074 kb on + strand, within MMJJ_RS00955at 185.074 kb on + strand, within MMJJ_RS00955at 185.093 kb on - strand, within MMJJ_RS00955at 185.096 kb on - strand, within MMJJ_RS00955at 185.097 kb on + strand, within MMJJ_RS00955at 185.112 kb on - strand, within MMJJ_RS00955at 185.159 kb on + strand, within MMJJ_RS00955at 185.182 kb on + strand, within MMJJ_RS00955at 185.189 kb on - strand, within MMJJ_RS00955at 185.190 kb on + strand, within MMJJ_RS00955at 185.190 kb on + strand, within MMJJ_RS00955at 185.190 kb on + strand, within MMJJ_RS00955at 185.190 kb on + strand, within MMJJ_RS00955at 185.261 kb on - strand, within MMJJ_RS00955at 185.261 kb on - strand, within MMJJ_RS00955at 185.292 kb on - strand, within MMJJ_RS00955at 185.293 kb on + strand, within MMJJ_RS00955at 185.293 kb on + strand, within MMJJ_RS00955at 185.293 kb on + strand, within MMJJ_RS00955at 185.293 kb on + strand, within MMJJ_RS00955at 185.293 kb on + strand, within MMJJ_RS00955at 185.296 kb on - strand, within MMJJ_RS00955at 185.297 kb on + strand, within MMJJ_RS00955at 185.300 kb on + strandat 185.357 kb on + strandat 185.462 kb on - strandat 185.488 kb on - strand, within MMJJ_RS00960at 185.509 kb on - strand, within MMJJ_RS00960at 185.509 kb on - strand, within MMJJ_RS00960at 185.558 kb on - strand, within MMJJ_RS00960at 185.596 kb on + strand, within MMJJ_RS00960at 185.599 kb on - strand, within MMJJ_RS00960at 185.600 kb on + strand, within MMJJ_RS00960at 185.600 kb on + strand, within MMJJ_RS00960at 185.639 kb on + strand, within MMJJ_RS00960at 185.730 kb on + strand, within MMJJ_RS00960at 185.740 kb on - strand, within MMJJ_RS00960at 185.742 kb on - strand, within MMJJ_RS00960at 185.743 kb on + strand, within MMJJ_RS00960at 185.770 kb on - strand, within MMJJ_RS00960at 185.837 kb on + strand, within MMJJ_RS00960at 185.852 kb on - strand, within MMJJ_RS00960at 185.858 kb on + strand, within MMJJ_RS00960at 185.896 kb on - strand, within MMJJ_RS00960at 185.905 kb on - strand, within MMJJ_RS00960at 185.914 kb on - strand, within MMJJ_RS00960at 185.937 kb on - strand, within MMJJ_RS00960at 186.013 kb on - strandat 186.137 kb on - strandat 186.148 kb on - strandat 186.148 kb on - strandat 186.152 kb on - strandat 186.159 kb on + strandat 186.165 kb on + strandat 186.166 kb on - strandat 186.167 kb on + strandat 186.177 kb on + strandat 186.184 kb on - strandat 186.189 kb on - strandat 186.189 kb on - strandat 186.190 kb on + strandat 186.194 kb on - strandat 186.194 kb on - strandat 186.246 kb on - strandat 186.246 kb on - strandat 186.339 kb on - strandat 186.341 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 Vitamin & Casamino Acid FREE
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183,861 - MMJJ_RS00945 0.86 -0.8
183,862 + MMJJ_RS00945 0.86 +0.0
183,914 + -1.2
183,918 - -3.3
183,918 - -0.9
183,964 + +2.0
184,025 - +1.1
184,028 - -1.5
184,028 - -2.0
184,029 + +1.3
184,029 + -2.2
184,031 + +0.2
184,037 - -2.1
184,046 + -0.2
184,046 + -2.0
184,046 + +0.4
184,053 + -2.4
184,099 + -1.1
184,148 - MMJJ_RS00950 0.11 -1.1
184,211 - MMJJ_RS00950 0.20 +2.9
184,358 + MMJJ_RS00950 0.40 +0.8
184,554 - MMJJ_RS00950 0.68 +1.8
184,555 + MMJJ_RS00950 0.68 -0.0
184,556 - MMJJ_RS00950 0.68 -1.9
184,556 - MMJJ_RS00950 0.68 -0.6
184,557 + MMJJ_RS00950 0.68 -0.9
184,557 + MMJJ_RS00950 0.68 +1.1
184,563 - MMJJ_RS00950 0.69 +0.7
184,577 + MMJJ_RS00950 0.71 +0.9
184,743 + -0.5
184,775 - -1.0
184,830 - +0.1
184,935 + MMJJ_RS00955 0.22 +0.2
184,973 - MMJJ_RS00955 0.29 -1.8
184,985 - MMJJ_RS00955 0.31 +2.1
185,008 - MMJJ_RS00955 0.35 -0.4
185,024 - MMJJ_RS00955 0.38 +1.0
185,024 - MMJJ_RS00955 0.38 +0.9
185,068 + MMJJ_RS00955 0.47 +1.2
185,073 - MMJJ_RS00955 0.48 -1.5
185,074 + MMJJ_RS00955 0.48 -0.7
185,074 + MMJJ_RS00955 0.48 +1.8
185,074 + MMJJ_RS00955 0.48 -1.0
185,093 - MMJJ_RS00955 0.51 +1.3
185,096 - MMJJ_RS00955 0.52 -1.7
185,097 + MMJJ_RS00955 0.52 +0.7
185,112 - MMJJ_RS00955 0.55 -3.8
185,159 + MMJJ_RS00955 0.64 -0.8
185,182 + MMJJ_RS00955 0.68 -1.6
185,189 - MMJJ_RS00955 0.69 -1.1
185,190 + MMJJ_RS00955 0.69 -1.2
185,190 + MMJJ_RS00955 0.69 -1.7
185,190 + MMJJ_RS00955 0.69 -0.6
185,190 + MMJJ_RS00955 0.69 -0.3
185,261 - MMJJ_RS00955 0.83 -0.8
185,261 - MMJJ_RS00955 0.83 -1.3
185,292 - MMJJ_RS00955 0.88 -1.5
185,293 + MMJJ_RS00955 0.89 -0.7
185,293 + MMJJ_RS00955 0.89 -2.1
185,293 + MMJJ_RS00955 0.89 +1.2
185,293 + MMJJ_RS00955 0.89 -1.9
185,293 + MMJJ_RS00955 0.89 -0.3
185,296 - MMJJ_RS00955 0.89 -1.6
185,297 + MMJJ_RS00955 0.89 +1.4
185,300 + +1.8
185,357 + -1.5
185,462 - +0.9
185,488 - MMJJ_RS00960 0.12 +1.8
185,509 - MMJJ_RS00960 0.15 +3.2
185,509 - MMJJ_RS00960 0.15 -1.5
185,558 - MMJJ_RS00960 0.23 -1.9
185,596 + MMJJ_RS00960 0.29 +0.6
185,599 - MMJJ_RS00960 0.30 -1.1
185,600 + MMJJ_RS00960 0.30 -1.5
185,600 + MMJJ_RS00960 0.30 -1.7
185,639 + MMJJ_RS00960 0.36 +2.0
185,730 + MMJJ_RS00960 0.50 +1.4
185,740 - MMJJ_RS00960 0.52 -1.4
185,742 - MMJJ_RS00960 0.52 -1.1
185,743 + MMJJ_RS00960 0.52 +1.7
185,770 - MMJJ_RS00960 0.56 -2.2
185,837 + MMJJ_RS00960 0.67 -2.3
185,852 - MMJJ_RS00960 0.69 -1.9
185,858 + MMJJ_RS00960 0.70 +1.1
185,896 - MMJJ_RS00960 0.76 +0.4
185,905 - MMJJ_RS00960 0.78 +3.3
185,914 - MMJJ_RS00960 0.79 +1.2
185,937 - MMJJ_RS00960 0.83 -0.8
186,013 - +1.2
186,137 - +2.0
186,148 - +1.6
186,148 - -0.9
186,152 - +1.6
186,159 + -1.4
186,165 + +1.7
186,166 - +1.5
186,167 + -1.8
186,177 + +0.3
186,184 - +0.8
186,189 - -0.9
186,189 - +0.2
186,190 + -1.2
186,194 - -1.4
186,194 - -1.7
186,246 - -2.0
186,246 - +0.7
186,339 - -0.7
186,341 - +0.2

Or see this region's nucleotide sequence