Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00085

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 Vitamin & Casamino Acid FREE

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 Vitamin & Casamino Acid FREE
15,409	-		MMJJ_RS00075	0.84	-0.4
15,433	-		MMJJ_RS00075	0.87	-2.5
15,434	+		MMJJ_RS00075	0.87	-1.8
15,464	+				-0.8
15,464	+				+0.2
15,465	-				-1.4
15,465	-				-0.6
15,465	-				-1.8
15,465	-				+2.0
15,466	+				-0.8
15,473	+				-1.0
15,516	-				-2.9
15,655	+		MMJJ_RS00080	0.19	+0.7
15,655	+		MMJJ_RS00080	0.19	+1.1
15,748	+		MMJJ_RS00080	0.33	-1.4
15,748	+		MMJJ_RS00080	0.33	-0.7
15,832	+		MMJJ_RS00080	0.46	-2.2
15,876	-		MMJJ_RS00080	0.53	-0.8
15,876	-		MMJJ_RS00080	0.53	-0.9
15,876	-		MMJJ_RS00080	0.53	-2.3
15,937	+		MMJJ_RS00080	0.62	-1.5
15,937	+		MMJJ_RS00080	0.62	-1.8
15,937	+		MMJJ_RS00080	0.62	+2.9
15,937	+		MMJJ_RS00080	0.62	-2.1
15,937	+		MMJJ_RS00080	0.62	-2.8
15,939	-		MMJJ_RS00080	0.63	+3.0
15,939	-		MMJJ_RS00080	0.63	-0.4
15,939	-		MMJJ_RS00080	0.63	-0.5
15,939	-		MMJJ_RS00080	0.63	-1.8
15,939	-		MMJJ_RS00080	0.63	-0.4
15,939	-		MMJJ_RS00080	0.63	+2.5
15,939	-		MMJJ_RS00080	0.63	+2.3
15,940	+		MMJJ_RS00080	0.63	-1.7
15,940	+		MMJJ_RS00080	0.63	-0.1
15,940	+		MMJJ_RS00080	0.63	-1.3
15,941	-		MMJJ_RS00080	0.63	-0.1
15,941	-		MMJJ_RS00080	0.63	+1.4
15,941	-		MMJJ_RS00080	0.63	-2.1
15,941	-		MMJJ_RS00080	0.63	+0.2
15,942	+		MMJJ_RS00080	0.63	-0.4
15,942	+		MMJJ_RS00080	0.63	-0.9
15,942	+		MMJJ_RS00080	0.63	-1.5
15,942	+		MMJJ_RS00080	0.63	-1.4
15,944	+		MMJJ_RS00080	0.63	+0.0
15,958	-		MMJJ_RS00080	0.65	-1.9
15,997	+		MMJJ_RS00080	0.71	+0.2
15,997	+		MMJJ_RS00080	0.71	-1.4
15,999	-		MMJJ_RS00080	0.72	+0.2
16,003	-		MMJJ_RS00080	0.72	+1.1
16,003	-		MMJJ_RS00080	0.72	-3.2
16,003	-		MMJJ_RS00080	0.72	-2.5
16,004	+		MMJJ_RS00080	0.72	-0.4
16,004	+		MMJJ_RS00080	0.72	-1.1
16,074	+		MMJJ_RS00080	0.83	-1.7
16,074	+		MMJJ_RS00080	0.83	-2.9
16,100	-		MMJJ_RS00080	0.87	+2.8
16,103	-		MMJJ_RS00080	0.88	+2.1
16,103	-		MMJJ_RS00080	0.88	-0.6
16,105	-		MMJJ_RS00080	0.88	+0.3
16,127	-				-0.7
16,139	+				-0.4
16,139	+				-0.4
16,212	-				-1.5
16,212	-				-0.4
16,214	-				-1.5
16,215	+				-0.6
16,215	+				-1.7
16,226	-				+0.7
16,226	-				+2.0
16,226	-				+2.8
16,226	-				-0.0
16,226	-				-2.1
16,226	-				+0.0
16,226	-				+1.1
16,227	+				+1.6
16,227	+				-1.9
16,227	+				+0.7
16,227	+				+2.4
16,227	+				+0.7
16,227	+				+2.9
16,227	+				-1.6
16,227	+				-2.7
16,228	-				-2.0
16,228	-				-0.8
16,229	+				-2.2
16,229	+				-1.2
16,230	-				-0.4
16,230	-				+0.4
16,235	+				-2.0
16,266	+				-2.5
16,307	-				+2.2
16,307	-				+0.0
16,307	-				+2.4
16,307	-				+2.7
16,308	+				-1.2
16,308	+				+1.3
16,308	+				-1.2
16,336	+				+2.1
16,349	+				-3.6
16,400	-				+1.3
16,401	+				-0.2
16,401	+				+0.1
16,415	-				+1.3
16,468	-				+0.2
16,469	+				-0.3
16,724	-		MMJJ_RS00085	0.38	-1.3
16,725	+		MMJJ_RS00085	0.38	-1.9
16,725	+		MMJJ_RS00085	0.38	+1.2
16,742	+		MMJJ_RS00085	0.40	-1.2
16,759	+		MMJJ_RS00085	0.42	-1.9
16,803	-		MMJJ_RS00085	0.47	+1.9
16,803	-		MMJJ_RS00085	0.47	+1.1
16,993	-		MMJJ_RS00085	0.69	+2.3
17,001	-		MMJJ_RS00085	0.70	-1.2
17,002	+		MMJJ_RS00085	0.70	-0.8
17,009	+		MMJJ_RS00085	0.71	-1.9
17,020	-		MMJJ_RS00085	0.72	-0.8
17,020	-		MMJJ_RS00085	0.72	+2.8
17,065	+		MMJJ_RS00085	0.78	+1.3
17,070	-		MMJJ_RS00085	0.78	-2.5
17,071	+		MMJJ_RS00085	0.78	+3.3
17,086	-		MMJJ_RS00085	0.80	+3.0
17,093	-		MMJJ_RS00085	0.81	-1.6
17,093	-		MMJJ_RS00085	0.81	-1.2
17,093	-		MMJJ_RS00085	0.81	-1.5
17,093	-		MMJJ_RS00085	0.81	+0.7
17,093	-		MMJJ_RS00085	0.81	+2.2
17,094	+		MMJJ_RS00085	0.81	-1.6
17,094	+		MMJJ_RS00085	0.81	+1.4
17,094	+		MMJJ_RS00085	0.81	+1.4
17,094	+		MMJJ_RS00085	0.81	+2.1
17,106	-		MMJJ_RS00085	0.83	-2.4
17,106	-		MMJJ_RS00085	0.83	-0.7
17,107	+		MMJJ_RS00085	0.83	-0.4
17,107	+		MMJJ_RS00085	0.83	+1.6
17,117	-		MMJJ_RS00085	0.84	-1.6
17,117	-		MMJJ_RS00085	0.84	+1.2
17,117	-		MMJJ_RS00085	0.84	+1.9
17,117	-		MMJJ_RS00085	0.84	-1.8
17,117	-		MMJJ_RS00085	0.84	+2.0
17,118	+		MMJJ_RS00085	0.84	+0.1
17,118	+		MMJJ_RS00085	0.84	+1.9
17,118	+		MMJJ_RS00085	0.84	-2.0
17,118	+		MMJJ_RS00085	0.84	-3.4
17,123	-		MMJJ_RS00085	0.85	-1.7
17,158	-		MMJJ_RS00085	0.89	-1.3
17,159	+		MMJJ_RS00085	0.89	-0.1
17,179	-				-0.5
17,187	-				-0.8
17,187	-				+1.5
17,187	-				+0.4
17,188	+				-1.1
17,211	-				-0.5
17,212	+				+1.2
17,213	-				+1.3
17,222	-				+1.5
17,223	+				+3.2
17,249	+				+1.4
17,253	+				+1.2
17,275	-				-0.3
17,281	+				-2.2
17,329	-				-1.1
17,329	-				-0.6
17,335	-				-1.2
17,403	-		MMJJ_RS00090	0.15	-1.5
17,409	-		MMJJ_RS00090	0.16	-1.4
17,415	-		MMJJ_RS00090	0.17	-1.8
17,445	-		MMJJ_RS00090	0.21	-0.8
17,469	-		MMJJ_RS00090	0.25	-1.2
17,469	-		MMJJ_RS00090	0.25	-0.8
17,469	-		MMJJ_RS00090	0.25	-1.6
17,470	+		MMJJ_RS00090	0.25	+2.3
17,522	-		MMJJ_RS00090	0.33	+2.6
17,522	-		MMJJ_RS00090	0.33	-1.6
17,523	+		MMJJ_RS00090	0.33	+0.6
17,533	-		MMJJ_RS00090	0.34	+0.8
17,559	-		MMJJ_RS00090	0.38	+2.2
17,559	-		MMJJ_RS00090	0.38	-2.6
17,560	+		MMJJ_RS00090	0.38	+2.0
17,577	-		MMJJ_RS00090	0.41	+0.3
17,577	-		MMJJ_RS00090	0.41	-1.7
17,631	-				-0.8
17,649	-		MMJJ_RS00090	0.52	+3.0
17,653	+		MMJJ_RS00090	0.53	+1.1
17,662	+		MMJJ_RS00090	0.54	+3.7
17,723	-		MMJJ_RS00090	0.63	-0.6
17,727	-		MMJJ_RS00090	0.64	-1.6
17,793	+		MMJJ_RS00090	0.74	+0.4
17,795	-		MMJJ_RS00090	0.74	-2.1
17,806	-		MMJJ_RS00090	0.76	+1.4
17,806	-		MMJJ_RS00090	0.76	-1.3
17,807	+		MMJJ_RS00090	0.76	+1.6
17,807	+		MMJJ_RS00090	0.76	+1.4
17,809	+		MMJJ_RS00090	0.76	+1.5
17,809	+		MMJJ_RS00090	0.76	-1.0
17,809	+		MMJJ_RS00090	0.76	-0.4
17,809	-		MMJJ_RS00090	0.76	+2.4
17,833	+		MMJJ_RS00090	0.80	+1.0
17,864	-		MMJJ_RS00090	0.85	-0.7
17,865	+		MMJJ_RS00090	0.85	+2.6
17,866	-		MMJJ_RS00090	0.85	+0.2
17,866	-		MMJJ_RS00090	0.85	+1.7
17,866	-		MMJJ_RS00090	0.85	-0.8
17,867	+		MMJJ_RS00090	0.85	-1.2
17,867	+		MMJJ_RS00090	0.85	+1.0
17,978	+				+3.0
17,996	-				+0.2
18,022	+				+0.8
18,025	-				-2.8
18,026	+				-1.8
18,026	+				-0.2
18,054	+		MMJJ_RS00095	0.12	-1.8
18,098	-		MMJJ_RS00095	0.17	+2.3
18,098	-		MMJJ_RS00095	0.17	+1.4
18,098	-		MMJJ_RS00095	0.17	-0.0
18,098	-		MMJJ_RS00095	0.17	+2.7
18,099	+		MMJJ_RS00095	0.17	+1.2
18,099	+		MMJJ_RS00095	0.17	+1.8
18,099	+		MMJJ_RS00095	0.17	+2.2
18,099	+		MMJJ_RS00095	0.17	+1.6
18,100	-		MMJJ_RS00095	0.17	-2.2
18,100	-		MMJJ_RS00095	0.17	-0.7
18,101	+		MMJJ_RS00095	0.17	+1.6
18,108	+		MMJJ_RS00095	0.18	+2.2
18,125	+		MMJJ_RS00095	0.20	-1.3
18,151	-		MMJJ_RS00095	0.23	+0.5
18,161	+		MMJJ_RS00095	0.24	+2.9
18,161	+		MMJJ_RS00095	0.24	+1.5
18,225	+		MMJJ_RS00095	0.32	-1.4
18,237	+		MMJJ_RS00095	0.33	+1.5