Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00935 and HSERO_RS00940 are separated by 224 nucleotides HSERO_RS00940 and HSERO_RS00945 are separated by 109 nucleotides HSERO_RS00945 and HSERO_RS00950 are separated by 339 nucleotides
HSERO_RS00935: HSERO_RS00935 - TonB-denpendent receptor, at 197,841 to 199,955
_RS00935
HSERO_RS00940: HSERO_RS00940 - general secretion pathway protein, at 200,180 to 200,647
_RS00940
HSERO_RS00945: HSERO_RS00945 - frataxin, at 200,757 to 201,089
_RS00945
HSERO_RS00950: HSERO_RS00950 - diaminopimelate decarboxylase, at 201,429 to 202,721
_RS00950
Position (kb) 200
201 Strain fitness (log2 ratio) -2
-1
0
1 at 199.344 kb on + strand, within HSERO_RS00935 at 199.351 kb on + strand, within HSERO_RS00935 at 199.448 kb on + strand, within HSERO_RS00935 at 199.473 kb on + strand, within HSERO_RS00935 at 199.596 kb on + strand, within HSERO_RS00935 at 199.661 kb on + strand, within HSERO_RS00935 at 199.669 kb on - strand, within HSERO_RS00935 at 199.686 kb on - strand, within HSERO_RS00935 at 199.740 kb on - strand, within HSERO_RS00935 at 199.764 kb on + strand at 199.798 kb on + strand at 199.846 kb on - strand at 199.858 kb on + strand at 199.925 kb on - strand at 199.977 kb on - strand at 200.064 kb on - strand at 200.183 kb on + strand at 200.197 kb on + strand at 200.282 kb on - strand, within HSERO_RS00940 at 200.284 kb on + strand, within HSERO_RS00940 at 200.343 kb on + strand, within HSERO_RS00940 at 200.390 kb on + strand, within HSERO_RS00940 at 200.508 kb on + strand, within HSERO_RS00940 at 200.627 kb on + strand at 200.799 kb on - strand, within HSERO_RS00945 at 201.052 kb on - strand, within HSERO_RS00945 at 201.288 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 199,344 + HSERO_RS00935 0.71 -0.8 199,351 + HSERO_RS00935 0.71 -1.0 199,448 + HSERO_RS00935 0.76 -0.4 199,473 + HSERO_RS00935 0.77 +1.6 199,596 + HSERO_RS00935 0.83 -1.1 199,661 + HSERO_RS00935 0.86 +0.3 199,669 - HSERO_RS00935 0.86 -2.1 199,686 - HSERO_RS00935 0.87 +0.6 199,740 - HSERO_RS00935 0.90 -0.3 199,764 + +1.2 199,798 + +0.6 199,846 - -0.0 199,858 + -0.1 199,925 - -2.0 199,977 - -0.4 200,064 - -0.1 200,183 + -0.0 200,197 + +0.5 200,282 - HSERO_RS00940 0.22 -0.4 200,284 + HSERO_RS00940 0.22 -1.2 200,343 + HSERO_RS00940 0.35 -2.6 200,390 + HSERO_RS00940 0.45 -0.1 200,508 + HSERO_RS00940 0.70 -1.2 200,627 + -0.6 200,799 - HSERO_RS00945 0.13 -0.8 201,052 - HSERO_RS00945 0.89 -0.6 201,288 + -0.9
Or see this region's nucleotide sequence