Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00535 and HSERO_RS00540 are separated by 28 nucleotides HSERO_RS00540 and HSERO_RS00545 are separated by 329 nucleotides HSERO_RS00545 and HSERO_RS00550 are separated by 156 nucleotides
HSERO_RS00535: HSERO_RS00535 - TonB-dependent receptor, at 124,618 to 126,906
_RS00535
HSERO_RS00540: HSERO_RS00540 - hemin transporter, at 126,935 to 128,080
_RS00540
HSERO_RS00545: HSERO_RS00545 - 30S ribosomal protein S12, at 128,410 to 128,793
_RS00545
HSERO_RS00550: HSERO_RS00550 - 30S ribosomal protein S7, at 128,950 to 129,420
_RS00550
Position (kb) 126
127
128
129 Strain fitness (log2 ratio) -1
0
1 at 126.020 kb on + strand, within HSERO_RS00535 at 126.042 kb on - strand, within HSERO_RS00535 at 126.166 kb on - strand, within HSERO_RS00535 at 126.514 kb on - strand, within HSERO_RS00535 at 126.517 kb on + strand, within HSERO_RS00535 at 126.531 kb on - strand, within HSERO_RS00535 at 126.603 kb on - strand, within HSERO_RS00535 at 126.640 kb on + strand, within HSERO_RS00535 at 126.642 kb on + strand, within HSERO_RS00535 at 126.650 kb on - strand, within HSERO_RS00535 at 126.731 kb on + strand at 126.739 kb on - strand at 126.851 kb on - strand at 126.940 kb on + strand at 127.063 kb on - strand, within HSERO_RS00540 at 127.296 kb on - strand, within HSERO_RS00540 at 127.618 kb on - strand, within HSERO_RS00540 at 127.633 kb on - strand, within HSERO_RS00540 at 127.635 kb on - strand, within HSERO_RS00540 at 127.811 kb on + strand, within HSERO_RS00540 at 127.858 kb on - strand, within HSERO_RS00540 at 128.039 kb on + strand at 128.085 kb on + strand at 128.178 kb on - strand at 128.757 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 126,020 + HSERO_RS00535 0.61 +0.2 126,042 - HSERO_RS00535 0.62 -1.4 126,166 - HSERO_RS00535 0.68 -0.9 126,514 - HSERO_RS00535 0.83 -0.3 126,517 + HSERO_RS00535 0.83 +0.1 126,531 - HSERO_RS00535 0.84 -1.0 126,603 - HSERO_RS00535 0.87 +0.2 126,640 + HSERO_RS00535 0.88 -0.3 126,642 + HSERO_RS00535 0.88 -0.6 126,650 - HSERO_RS00535 0.89 -0.1 126,731 + -1.0 126,739 - -1.0 126,851 - +0.2 126,940 + +0.8 127,063 - HSERO_RS00540 0.11 +0.2 127,296 - HSERO_RS00540 0.32 -1.6 127,618 - HSERO_RS00540 0.60 -1.3 127,633 - HSERO_RS00540 0.61 +0.3 127,635 - HSERO_RS00540 0.61 -0.1 127,811 + HSERO_RS00540 0.76 +0.2 127,858 - HSERO_RS00540 0.81 -1.1 128,039 + -0.5 128,085 + -0.7 128,178 - +0.1 128,757 + -1.5
Or see this region's nucleotide sequence