Experiment: (+)-Arabinogalactan 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01835 and HMPREF1058_RS01830 overlap by 4 nucleotides HMPREF1058_RS01830 and HMPREF1058_RS21545 are separated by 11 nucleotides HMPREF1058_RS21545 and HMPREF1058_RS21715 overlap by 1 nucleotides HMPREF1058_RS21715 and HMPREF1058_RS01820 are separated by 296 nucleotides HMPREF1058_RS01820 and HMPREF1058_RS01815 are separated by 12 nucleotides
HMPREF1058_RS01835: HMPREF1058_RS01835 - hypothetical protein, at 34,684 to 35,070
_RS01835
HMPREF1058_RS01830: HMPREF1058_RS01830 - DUF882 domain-containing protein, at 35,067 to 35,465
_RS01830
HMPREF1058_RS21545: HMPREF1058_RS21545 - hypothetical protein, at 35,477 to 35,635
_RS21545
HMPREF1058_RS21715: HMPREF1058_RS21715 - hypothetical protein, at 35,635 to 36,171
_RS21715
HMPREF1058_RS01820: HMPREF1058_RS01820 - hypothetical protein, at 36,468 to 36,710
_RS01820
HMPREF1058_RS01815: HMPREF1058_RS01815 - phage integrase SAM-like domain-containing protein, at 36,723 to 37,964
_RS01815
Position (kb) 35
36
37 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 34.637 kb on - strand at 34.643 kb on - strand at 34.657 kb on - strand at 34.659 kb on + strand at 34.660 kb on - strand at 34.709 kb on + strand at 35.042 kb on + strand at 35.042 kb on + strand at 35.043 kb on - strand at 35.043 kb on - strand at 35.217 kb on - strand, within HMPREF1058_RS01830 at 35.217 kb on - strand, within HMPREF1058_RS01830 at 35.224 kb on + strand, within HMPREF1058_RS01830 at 35.274 kb on - strand, within HMPREF1058_RS01830 at 35.353 kb on - strand, within HMPREF1058_RS01830 at 35.355 kb on - strand, within HMPREF1058_RS01830 at 35.470 kb on + strand at 35.593 kb on + strand, within HMPREF1058_RS21545 at 35.593 kb on + strand, within HMPREF1058_RS21545 at 35.644 kb on + strand at 35.644 kb on + strand at 35.645 kb on - strand at 35.646 kb on + strand at 35.647 kb on - strand at 35.649 kb on + strand at 35.650 kb on - strand at 35.650 kb on - strand at 35.760 kb on - strand, within HMPREF1058_RS21715 at 35.799 kb on - strand, within HMPREF1058_RS21715 at 35.848 kb on + strand, within HMPREF1058_RS21715 at 35.848 kb on + strand, within HMPREF1058_RS21715 at 35.849 kb on - strand at 35.849 kb on - strand, within HMPREF1058_RS21715 at 35.852 kb on + strand, within HMPREF1058_RS21715 at 35.852 kb on + strand, within HMPREF1058_RS21715 at 35.869 kb on + strand, within HMPREF1058_RS21715 at 35.870 kb on - strand, within HMPREF1058_RS21715 at 35.940 kb on + strand, within HMPREF1058_RS21715 at 36.128 kb on + strand at 36.128 kb on + strand at 36.129 kb on - strand at 36.169 kb on + strand at 36.183 kb on + strand at 36.341 kb on + strand at 36.371 kb on - strand at 36.391 kb on - strand at 36.446 kb on + strand at 36.464 kb on + strand at 36.465 kb on - strand at 36.487 kb on - strand at 36.517 kb on + strand, within HMPREF1058_RS01820 at 36.642 kb on + strand, within HMPREF1058_RS01820 at 36.643 kb on - strand, within HMPREF1058_RS01820 at 36.768 kb on - strand at 36.783 kb on - strand at 36.804 kb on + strand at 36.808 kb on + strand at 36.810 kb on + strand at 36.864 kb on - strand, within HMPREF1058_RS01815 at 36.973 kb on - strand, within HMPREF1058_RS01815 at 37.017 kb on - strand, within HMPREF1058_RS01815 at 37.018 kb on + strand, within HMPREF1058_RS01815 at 37.054 kb on + strand, within HMPREF1058_RS01815 at 37.064 kb on - strand, within HMPREF1058_RS01815 at 37.064 kb on - strand, within HMPREF1058_RS01815 at 37.066 kb on - strand, within HMPREF1058_RS01815 at 37.099 kb on - strand, within HMPREF1058_RS01815 at 37.144 kb on + strand, within HMPREF1058_RS01815 at 37.144 kb on + strand, within HMPREF1058_RS01815
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan 5 mg/ml (C) remove 34,637 - +1.8 34,643 - -0.9 34,657 - +0.9 34,659 + +0.8 34,660 - +0.6 34,709 + -0.4 35,042 + +0.3 35,042 + +0.4 35,043 - -0.4 35,043 - -0.3 35,217 - HMPREF1058_RS01830 0.38 +0.0 35,217 - HMPREF1058_RS01830 0.38 -0.2 35,224 + HMPREF1058_RS01830 0.39 +2.2 35,274 - HMPREF1058_RS01830 0.52 -0.6 35,353 - HMPREF1058_RS01830 0.72 -0.2 35,355 - HMPREF1058_RS01830 0.72 +0.8 35,470 + +0.9 35,593 + HMPREF1058_RS21545 0.73 +0.0 35,593 + HMPREF1058_RS21545 0.73 +1.6 35,644 + +0.9 35,644 + +0.2 35,645 - +2.1 35,646 + -0.9 35,647 - -2.1 35,649 + +0.9 35,650 - +0.2 35,650 - +1.4 35,760 - HMPREF1058_RS21715 0.23 +0.1 35,799 - HMPREF1058_RS21715 0.31 -0.6 35,848 + HMPREF1058_RS21715 0.40 +1.3 35,848 + HMPREF1058_RS21715 0.40 +1.0 35,849 - +1.8 35,849 - HMPREF1058_RS21715 0.40 -0.4 35,852 + HMPREF1058_RS21715 0.40 -0.4 35,852 + HMPREF1058_RS21715 0.40 -0.3 35,869 + HMPREF1058_RS21715 0.44 -1.7 35,870 - HMPREF1058_RS21715 0.44 -0.6 35,940 + HMPREF1058_RS21715 0.57 +2.2 36,128 + +0.4 36,128 + +0.4 36,129 - -1.2 36,169 + +0.0 36,183 + -1.7 36,341 + -0.6 36,371 - +0.8 36,391 - +0.5 36,446 + +0.9 36,464 + -0.5 36,465 - +0.5 36,487 - -0.3 36,517 + HMPREF1058_RS01820 0.20 +1.5 36,642 + HMPREF1058_RS01820 0.72 -1.9 36,643 - HMPREF1058_RS01820 0.72 +2.9 36,768 - +1.0 36,783 - -0.0 36,804 + +1.8 36,808 + -0.7 36,810 + +2.7 36,864 - HMPREF1058_RS01815 0.11 +0.4 36,973 - HMPREF1058_RS01815 0.20 +0.5 37,017 - HMPREF1058_RS01815 0.24 +0.2 37,018 + HMPREF1058_RS01815 0.24 +0.0 37,054 + HMPREF1058_RS01815 0.27 -0.4 37,064 - HMPREF1058_RS01815 0.27 -0.5 37,064 - HMPREF1058_RS01815 0.27 +0.6 37,066 - HMPREF1058_RS01815 0.28 -0.1 37,099 - HMPREF1058_RS01815 0.30 +0.7 37,144 + HMPREF1058_RS01815 0.34 +1.4 37,144 + HMPREF1058_RS01815 0.34 +1.0
Or see this region's nucleotide sequence