Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14710

Experiment: (+)-Arabinogalactan 5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS14715 and HMPREF1058_RS14710 are separated by 39 nucleotidesHMPREF1058_RS14710 and HMPREF1058_RS14705 are separated by 5 nucleotides HMPREF1058_RS14715: HMPREF1058_RS14715 - DNA repair protein RadA, at 1,123,183 to 1,124,550 _RS14715 HMPREF1058_RS14710: HMPREF1058_RS14710 - DUF1847 domain-containing protein, at 1,124,590 to 1,125,240 _RS14710 HMPREF1058_RS14705: HMPREF1058_RS14705 - FAD-binding protein, at 1,125,246 to 1,126,889 _RS14705 Position (kb) 1124 1125 1126Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1123.668 kb on + strand, within HMPREF1058_RS14715at 1123.699 kb on - strand, within HMPREF1058_RS14715at 1123.724 kb on + strand, within HMPREF1058_RS14715at 1123.755 kb on - strand, within HMPREF1058_RS14715at 1123.869 kb on + strand, within HMPREF1058_RS14715at 1123.869 kb on + strand, within HMPREF1058_RS14715at 1123.909 kb on + strand, within HMPREF1058_RS14715at 1123.909 kb on + strand, within HMPREF1058_RS14715at 1123.909 kb on + strand, within HMPREF1058_RS14715at 1123.911 kb on + strand, within HMPREF1058_RS14715at 1123.915 kb on + strand, within HMPREF1058_RS14715at 1124.175 kb on + strand, within HMPREF1058_RS14715at 1124.175 kb on + strand, within HMPREF1058_RS14715at 1124.175 kb on + strand, within HMPREF1058_RS14715at 1124.176 kb on - strand, within HMPREF1058_RS14715at 1124.390 kb on + strand, within HMPREF1058_RS14715at 1124.461 kb on - strandat 1124.478 kb on + strandat 1124.519 kb on + strandat 1124.519 kb on + strandat 1124.553 kb on + strandat 1124.586 kb on + strandat 1124.586 kb on + strandat 1124.665 kb on + strand, within HMPREF1058_RS14710at 1124.666 kb on - strand, within HMPREF1058_RS14710at 1124.728 kb on + strand, within HMPREF1058_RS14710at 1124.731 kb on - strand, within HMPREF1058_RS14710at 1124.731 kb on - strand, within HMPREF1058_RS14710at 1124.858 kb on - strand, within HMPREF1058_RS14710at 1124.945 kb on + strand, within HMPREF1058_RS14710at 1125.098 kb on + strand, within HMPREF1058_RS14710at 1125.110 kb on - strand, within HMPREF1058_RS14710at 1125.126 kb on + strand, within HMPREF1058_RS14710at 1125.126 kb on + strand, within HMPREF1058_RS14710at 1125.127 kb on - strand, within HMPREF1058_RS14710at 1125.180 kb on - strandat 1125.181 kb on + strandat 1125.181 kb on + strandat 1125.181 kb on + strandat 1125.239 kb on - strandat 1125.345 kb on - strandat 1125.380 kb on - strandat 1125.380 kb on - strandat 1125.380 kb on - strandat 1125.402 kb on + strandat 1125.402 kb on + strandat 1125.426 kb on + strand, within HMPREF1058_RS14705at 1125.428 kb on + strand, within HMPREF1058_RS14705at 1125.428 kb on + strand, within HMPREF1058_RS14705at 1125.429 kb on - strand, within HMPREF1058_RS14705at 1125.469 kb on + strand, within HMPREF1058_RS14705at 1125.469 kb on + strand, within HMPREF1058_RS14705at 1125.470 kb on - strand, within HMPREF1058_RS14705at 1125.471 kb on + strand, within HMPREF1058_RS14705at 1125.472 kb on - strand, within HMPREF1058_RS14705at 1125.472 kb on - strand, within HMPREF1058_RS14705at 1125.472 kb on - strand, within HMPREF1058_RS14705at 1125.474 kb on - strand, within HMPREF1058_RS14705at 1125.476 kb on + strand, within HMPREF1058_RS14705at 1125.481 kb on + strand, within HMPREF1058_RS14705at 1125.482 kb on - strand, within HMPREF1058_RS14705at 1125.550 kb on + strand, within HMPREF1058_RS14705at 1125.551 kb on - strand, within HMPREF1058_RS14705at 1125.596 kb on - strand, within HMPREF1058_RS14705at 1125.602 kb on + strand, within HMPREF1058_RS14705at 1125.610 kb on + strand, within HMPREF1058_RS14705at 1125.708 kb on + strand, within HMPREF1058_RS14705at 1125.754 kb on + strand, within HMPREF1058_RS14705at 1125.754 kb on + strand, within HMPREF1058_RS14705at 1125.859 kb on + strand, within HMPREF1058_RS14705at 1125.859 kb on + strand, within HMPREF1058_RS14705at 1125.860 kb on - strand, within HMPREF1058_RS14705at 1125.860 kb on - strand, within HMPREF1058_RS14705at 1125.911 kb on - strand, within HMPREF1058_RS14705at 1125.935 kb on - strand, within HMPREF1058_RS14705at 1125.935 kb on - strand, within HMPREF1058_RS14705at 1126.017 kb on + strand, within HMPREF1058_RS14705at 1126.017 kb on + strand, within HMPREF1058_RS14705at 1126.030 kb on + strand, within HMPREF1058_RS14705at 1126.100 kb on - strand, within HMPREF1058_RS14705at 1126.104 kb on + strand, within HMPREF1058_RS14705at 1126.110 kb on - strand, within HMPREF1058_RS14705at 1126.110 kb on - strand, within HMPREF1058_RS14705at 1126.131 kb on + strand, within HMPREF1058_RS14705at 1126.150 kb on - strand, within HMPREF1058_RS14705at 1126.185 kb on + strand, within HMPREF1058_RS14705at 1126.186 kb on - strand, within HMPREF1058_RS14705

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction (+)-Arabinogalactan 5 mg/ml (C)
remove
1,123,668 + HMPREF1058_RS14715 0.35 +5.1
1,123,699 - HMPREF1058_RS14715 0.38 +1.4
1,123,724 + HMPREF1058_RS14715 0.40 +0.1
1,123,755 - HMPREF1058_RS14715 0.42 -1.8
1,123,869 + HMPREF1058_RS14715 0.50 -0.1
1,123,869 + HMPREF1058_RS14715 0.50 -0.2
1,123,909 + HMPREF1058_RS14715 0.53 -0.6
1,123,909 + HMPREF1058_RS14715 0.53 -1.1
1,123,909 + HMPREF1058_RS14715 0.53 -0.9
1,123,911 + HMPREF1058_RS14715 0.53 +0.5
1,123,915 + HMPREF1058_RS14715 0.54 -1.3
1,124,175 + HMPREF1058_RS14715 0.73 +0.1
1,124,175 + HMPREF1058_RS14715 0.73 -0.3
1,124,175 + HMPREF1058_RS14715 0.73 -1.4
1,124,176 - HMPREF1058_RS14715 0.73 +0.7
1,124,390 + HMPREF1058_RS14715 0.88 -0.4
1,124,461 - -0.4
1,124,478 + -0.6
1,124,519 + -0.1
1,124,519 + +0.2
1,124,553 + +0.2
1,124,586 + +0.7
1,124,586 + -1.3
1,124,665 + HMPREF1058_RS14710 0.12 -0.1
1,124,666 - HMPREF1058_RS14710 0.12 -0.5
1,124,728 + HMPREF1058_RS14710 0.21 +1.0
1,124,731 - HMPREF1058_RS14710 0.22 -0.4
1,124,731 - HMPREF1058_RS14710 0.22 -2.3
1,124,858 - HMPREF1058_RS14710 0.41 -1.4
1,124,945 + HMPREF1058_RS14710 0.55 -2.5
1,125,098 + HMPREF1058_RS14710 0.78 -0.5
1,125,110 - HMPREF1058_RS14710 0.80 +0.3
1,125,126 + HMPREF1058_RS14710 0.82 -0.7
1,125,126 + HMPREF1058_RS14710 0.82 -0.7
1,125,127 - HMPREF1058_RS14710 0.82 -1.4
1,125,180 - -1.0
1,125,181 + -0.3
1,125,181 + -0.9
1,125,181 + -0.6
1,125,239 - -0.4
1,125,345 - -1.8
1,125,380 - -0.2
1,125,380 - -0.7
1,125,380 - -0.2
1,125,402 + +0.1
1,125,402 + -1.2
1,125,426 + HMPREF1058_RS14705 0.11 +0.9
1,125,428 + HMPREF1058_RS14705 0.11 +1.8
1,125,428 + HMPREF1058_RS14705 0.11 -0.3
1,125,429 - HMPREF1058_RS14705 0.11 +0.9
1,125,469 + HMPREF1058_RS14705 0.14 +0.1
1,125,469 + HMPREF1058_RS14705 0.14 +1.6
1,125,470 - HMPREF1058_RS14705 0.14 -0.6
1,125,471 + HMPREF1058_RS14705 0.14 -0.1
1,125,472 - HMPREF1058_RS14705 0.14 -0.1
1,125,472 - HMPREF1058_RS14705 0.14 +0.2
1,125,472 - HMPREF1058_RS14705 0.14 +0.0
1,125,474 - HMPREF1058_RS14705 0.14 -1.7
1,125,476 + HMPREF1058_RS14705 0.14 +0.3
1,125,481 + HMPREF1058_RS14705 0.14 -2.1
1,125,482 - HMPREF1058_RS14705 0.14 +1.7
1,125,550 + HMPREF1058_RS14705 0.18 -0.1
1,125,551 - HMPREF1058_RS14705 0.19 +1.1
1,125,596 - HMPREF1058_RS14705 0.21 +0.3
1,125,602 + HMPREF1058_RS14705 0.22 +0.8
1,125,610 + HMPREF1058_RS14705 0.22 -1.0
1,125,708 + HMPREF1058_RS14705 0.28 +0.7
1,125,754 + HMPREF1058_RS14705 0.31 +0.9
1,125,754 + HMPREF1058_RS14705 0.31 +1.0
1,125,859 + HMPREF1058_RS14705 0.37 -0.0
1,125,859 + HMPREF1058_RS14705 0.37 +1.2
1,125,860 - HMPREF1058_RS14705 0.37 -0.3
1,125,860 - HMPREF1058_RS14705 0.37 -0.1
1,125,911 - HMPREF1058_RS14705 0.40 +0.8
1,125,935 - HMPREF1058_RS14705 0.42 +0.2
1,125,935 - HMPREF1058_RS14705 0.42 +1.4
1,126,017 + HMPREF1058_RS14705 0.47 -0.1
1,126,017 + HMPREF1058_RS14705 0.47 -0.7
1,126,030 + HMPREF1058_RS14705 0.48 -1.3
1,126,100 - HMPREF1058_RS14705 0.52 +0.8
1,126,104 + HMPREF1058_RS14705 0.52 -0.3
1,126,110 - HMPREF1058_RS14705 0.53 -1.1
1,126,110 - HMPREF1058_RS14705 0.53 +0.0
1,126,131 + HMPREF1058_RS14705 0.54 -0.2
1,126,150 - HMPREF1058_RS14705 0.55 -2.2
1,126,185 + HMPREF1058_RS14705 0.57 +0.3
1,126,186 - HMPREF1058_RS14705 0.57 +1.0

Or see this region's nucleotide sequence