Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS04550

Experiment: (+)-Arabinogalactan 5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	(+)-Arabinogalactan 5 mg/ml (C)
8,579	+		HMPREF1058_RS04560	0.38	-0.1
8,592	+		HMPREF1058_RS04560	0.41	+1.3
8,726	+		HMPREF1058_RS04560	0.70	+0.9
8,816	+		HMPREF1058_RS04560	0.90	-0.5
8,821	+				+1.7
9,027	+		HMPREF1058_RS04555	0.25	+0.3
9,099	+		HMPREF1058_RS04555	0.36	+5.5
9,240	+		HMPREF1058_RS04555	0.57	-0.9
9,263	+		HMPREF1058_RS04555	0.60	-1.3
9,511	+				-0.3
9,513	+				-0.0
9,532	+				-0.7
9,557	+				+5.7
9,557	+				-0.3
9,685	+		HMPREF1058_RS04550	0.20	-0.4
10,168	+		HMPREF1058_RS04550	0.83	-0.8
10,324	+				-0.8
10,324	+				+2.7
10,442	+		HMPREF1058_RS04545	0.53	+0.2
10,729	+				+1.3
10,729	+				+1.2
10,847	+				+0.0
10,847	+				-1.7
11,039	+		HMPREF1058_RS04530	0.12	-0.5
11,058	+		HMPREF1058_RS04530	0.21	-1.4
11,102	+		HMPREF1058_RS04530	0.42	-1.8
11,235	+				-0.5
11,244	+				-0.2