Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS04500

Experiment: (+)-Arabinogalactan 5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	(+)-Arabinogalactan 5 mg/ml (C)
14,342	+		HMPREF1058_RS04505	0.21	+0.3
14,398	+		HMPREF1058_RS04505	0.27	+0.9
14,399	-		HMPREF1058_RS04505	0.27	-1.5
14,401	+		HMPREF1058_RS04505	0.27	+0.3
14,402	-		HMPREF1058_RS04505	0.27	-0.5
14,541	-		HMPREF1058_RS04505	0.40	-1.1
14,627	+		HMPREF1058_RS04505	0.48	+1.7
14,757	+		HMPREF1058_RS04505	0.60	-2.1
14,772	-		HMPREF1058_RS04505	0.61	-0.6
14,886	+		HMPREF1058_RS04505	0.71	+0.2
14,908	+		HMPREF1058_RS04505	0.73	+3.8
14,909	-		HMPREF1058_RS04505	0.74	-1.7
14,948	+		HMPREF1058_RS04505	0.77	+1.4
14,949	-		HMPREF1058_RS04505	0.77	+0.6
14,953	+		HMPREF1058_RS04505	0.78	-1.8
14,954	-		HMPREF1058_RS04505	0.78	-0.4
15,099	-				-0.1
15,099	-				-1.5
15,176	+				+1.0
15,202	+				-0.1
15,203	-				+0.1
15,289	-				-1.6
15,293	-				-0.0
15,434	+				-2.4
15,438	+		HMPREF1058_RS04500	0.10	+0.6
15,438	+		HMPREF1058_RS04500	0.10	+0.7
15,483	+		HMPREF1058_RS04500	0.13	-1.4
15,582	+		HMPREF1058_RS04500	0.20	+0.1
15,630	+		HMPREF1058_RS04500	0.23	-0.3
15,675	-		HMPREF1058_RS04500	0.26	-1.6
15,677	-		HMPREF1058_RS04500	0.26	-0.4
15,677	-		HMPREF1058_RS04500	0.26	-0.3
15,729	+		HMPREF1058_RS04500	0.29	-0.4
15,753	-		HMPREF1058_RS04500	0.31	-2.2
15,812	+		HMPREF1058_RS04500	0.35	+0.5
15,812	+		HMPREF1058_RS04500	0.35	+1.9
15,813	-		HMPREF1058_RS04500	0.35	+1.1
15,890	+		HMPREF1058_RS04500	0.40	-1.5
15,932	+		HMPREF1058_RS04500	0.43	-1.4
15,932	+		HMPREF1058_RS04500	0.43	+2.8
15,933	-		HMPREF1058_RS04500	0.43	-1.2
15,957	-		HMPREF1058_RS04500	0.45	-3.2
16,037	-		HMPREF1058_RS04500	0.50	+2.8
16,138	-		HMPREF1058_RS04500	0.57	-1.0
16,147	+		HMPREF1058_RS04500	0.57	+0.0
16,150	+		HMPREF1058_RS04500	0.58	-0.7
16,150	+		HMPREF1058_RS04500	0.58	+1.1
16,262	-		HMPREF1058_RS04500	0.65	+2.4
16,269	+		HMPREF1058_RS04500	0.65	-0.4
16,270	-		HMPREF1058_RS04500	0.66	+0.1
16,464	+		HMPREF1058_RS04500	0.78	-0.8
16,495	+		HMPREF1058_RS04500	0.81	+0.7
16,527	+		HMPREF1058_RS04500	0.83	+0.4
16,528	-		HMPREF1058_RS04500	0.83	-0.0
16,563	+		HMPREF1058_RS04500	0.85	-0.3
16,585	+		HMPREF1058_RS04500	0.87	+0.7
16,586	-		HMPREF1058_RS04500	0.87	-1.8
16,686	+				-0.3
16,774	+				-0.8
16,811	+				-0.8
16,826	-				-1.9
16,827	+				+0.2
16,831	+				-0.1
16,848	-				+0.7
16,935	-				+0.7
17,027	+		HMPREF1058_RS04495	0.11	-0.5
17,101	+		HMPREF1058_RS04495	0.17	-2.5
17,121	-		HMPREF1058_RS04495	0.19	+1.4
17,181	-		HMPREF1058_RS04495	0.24	-0.1
17,238	-		HMPREF1058_RS04495	0.28	-1.3
17,244	+		HMPREF1058_RS04495	0.29	-0.9
17,244	+		HMPREF1058_RS04495	0.29	+0.8
17,244	+		HMPREF1058_RS04495	0.29	+0.1
17,244	+		HMPREF1058_RS04495	0.29	-1.2
17,245	-		HMPREF1058_RS04495	0.29	-0.6
17,247	-		HMPREF1058_RS04495	0.29	+0.1
17,247	-		HMPREF1058_RS04495	0.29	+3.5
17,249	+		HMPREF1058_RS04495	0.29	-2.1
17,317	-		HMPREF1058_RS04495	0.35	+0.3
17,535	-		HMPREF1058_RS04495	0.52	-0.5
17,552	+		HMPREF1058_RS04495	0.54	-2.2
17,582	+		HMPREF1058_RS04495	0.56	+1.0
17,583	-		HMPREF1058_RS04495	0.56	-0.2
17,583	-		HMPREF1058_RS04495	0.56	-0.7
17,617	-		HMPREF1058_RS04495	0.59	+0.2
17,618	+		HMPREF1058_RS04495	0.59	-0.6
17,618	+		HMPREF1058_RS04495	0.59	-1.9
17,619	-		HMPREF1058_RS04495	0.59	-1.5
17,707	-		HMPREF1058_RS04495	0.66	-0.5
17,708	+		HMPREF1058_RS04495	0.66	+0.5
17,753	+		HMPREF1058_RS04495	0.70	-0.2
17,753	+		HMPREF1058_RS04495	0.70	-0.8