Experiment: (+)-Arabinogalactan 5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04410 and HMPREF1058_RS04405 are separated by 271 nucleotides HMPREF1058_RS04405 and HMPREF1058_RS04400 are separated by 16 nucleotides HMPREF1058_RS04400 and HMPREF1058_RS21665 are separated by 142 nucleotides HMPREF1058_RS21665 and HMPREF1058_RS04395 are separated by 19 nucleotides HMPREF1058_RS04395 and HMPREF1058_RS04390 are separated by 128 nucleotides
HMPREF1058_RS04410: HMPREF1058_RS04410 - porin family protein, at 43,418 to 43,815
_RS04410
HMPREF1058_RS04405: HMPREF1058_RS04405 - flavodoxin FldA, at 44,087 to 44,590
_RS04405
HMPREF1058_RS04400: HMPREF1058_RS04400 - DUF2023 family protein, at 44,607 to 44,951
_RS04400
HMPREF1058_RS21665: HMPREF1058_RS21665 - hypothetical protein, at 45,094 to 45,264
_RS21665
HMPREF1058_RS04395: HMPREF1058_RS04395 - thioredoxin family protein, at 45,284 to 45,580
_RS04395
HMPREF1058_RS04390: HMPREF1058_RS04390 - aspartate--tRNA ligase, at 45,709 to 47,472
_RS04390
Position (kb) 44
45 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 43.913 kb on - strand at 43.949 kb on + strand at 44.009 kb on - strand at 44.017 kb on + strand at 44.103 kb on + strand at 44.152 kb on - strand, within HMPREF1058_RS04405 at 44.163 kb on + strand, within HMPREF1058_RS04405 at 44.184 kb on + strand, within HMPREF1058_RS04405 at 44.184 kb on + strand at 44.185 kb on - strand, within HMPREF1058_RS04405 at 44.197 kb on + strand, within HMPREF1058_RS04405 at 44.285 kb on + strand, within HMPREF1058_RS04405 at 44.331 kb on + strand, within HMPREF1058_RS04405 at 44.366 kb on + strand, within HMPREF1058_RS04405 at 44.399 kb on - strand, within HMPREF1058_RS04405 at 44.400 kb on + strand, within HMPREF1058_RS04405 at 44.401 kb on - strand, within HMPREF1058_RS04405 at 44.402 kb on + strand, within HMPREF1058_RS04405 at 44.402 kb on + strand, within HMPREF1058_RS04405 at 44.402 kb on + strand, within HMPREF1058_RS04405 at 44.465 kb on + strand, within HMPREF1058_RS04405 at 44.607 kb on - strand at 44.607 kb on - strand at 44.612 kb on - strand at 44.612 kb on - strand at 44.612 kb on - strand at 44.644 kb on + strand, within HMPREF1058_RS04400 at 44.657 kb on + strand, within HMPREF1058_RS04400 at 44.680 kb on + strand, within HMPREF1058_RS04400 at 44.698 kb on - strand, within HMPREF1058_RS04400 at 44.698 kb on - strand, within HMPREF1058_RS04400 at 44.702 kb on + strand, within HMPREF1058_RS04400 at 44.703 kb on - strand, within HMPREF1058_RS04400 at 44.703 kb on - strand, within HMPREF1058_RS04400 at 44.760 kb on + strand, within HMPREF1058_RS04400 at 44.764 kb on + strand, within HMPREF1058_RS04400 at 44.765 kb on - strand, within HMPREF1058_RS04400 at 44.791 kb on + strand, within HMPREF1058_RS04400 at 44.883 kb on - strand, within HMPREF1058_RS04400 at 44.895 kb on - strand, within HMPREF1058_RS04400 at 44.895 kb on - strand, within HMPREF1058_RS04400 at 44.909 kb on + strand, within HMPREF1058_RS04400 at 44.947 kb on + strand at 44.968 kb on + strand at 44.984 kb on - strand at 45.051 kb on + strand at 45.094 kb on - strand at 45.255 kb on + strand at 45.291 kb on + strand at 45.331 kb on - strand, within HMPREF1058_RS04395 at 45.391 kb on - strand, within HMPREF1058_RS04395 at 45.416 kb on - strand, within HMPREF1058_RS04395 at 45.420 kb on + strand, within HMPREF1058_RS04395 at 45.468 kb on + strand, within HMPREF1058_RS04395 at 45.474 kb on + strand, within HMPREF1058_RS04395 at 45.474 kb on + strand, within HMPREF1058_RS04395 at 45.475 kb on - strand, within HMPREF1058_RS04395 at 45.617 kb on + strand at 45.618 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction (+)-Arabinogalactan 5 mg/ml (C) remove 43,913 - +0.1 43,949 + +0.3 44,009 - -1.5 44,017 + -0.6 44,103 + +0.5 44,152 - HMPREF1058_RS04405 0.13 +1.0 44,163 + HMPREF1058_RS04405 0.15 -0.3 44,184 + HMPREF1058_RS04405 0.19 -0.5 44,184 + +0.7 44,185 - HMPREF1058_RS04405 0.19 -0.1 44,197 + HMPREF1058_RS04405 0.22 +1.0 44,285 + HMPREF1058_RS04405 0.39 +0.0 44,331 + HMPREF1058_RS04405 0.48 -0.4 44,366 + HMPREF1058_RS04405 0.55 +2.1 44,399 - HMPREF1058_RS04405 0.62 -1.3 44,400 + HMPREF1058_RS04405 0.62 -0.0 44,401 - HMPREF1058_RS04405 0.62 -1.2 44,402 + HMPREF1058_RS04405 0.62 +0.5 44,402 + HMPREF1058_RS04405 0.62 -0.7 44,402 + HMPREF1058_RS04405 0.62 +1.6 44,465 + HMPREF1058_RS04405 0.75 +1.8 44,607 - +7.1 44,607 - -0.4 44,612 - +1.0 44,612 - -0.6 44,612 - -0.6 44,644 + HMPREF1058_RS04400 0.11 -1.4 44,657 + HMPREF1058_RS04400 0.14 +1.7 44,680 + HMPREF1058_RS04400 0.21 -1.4 44,698 - HMPREF1058_RS04400 0.26 -0.1 44,698 - HMPREF1058_RS04400 0.26 -0.3 44,702 + HMPREF1058_RS04400 0.28 -1.2 44,703 - HMPREF1058_RS04400 0.28 +0.1 44,703 - HMPREF1058_RS04400 0.28 -2.2 44,760 + HMPREF1058_RS04400 0.44 -1.0 44,764 + HMPREF1058_RS04400 0.46 -1.3 44,765 - HMPREF1058_RS04400 0.46 -1.7 44,791 + HMPREF1058_RS04400 0.53 -0.3 44,883 - HMPREF1058_RS04400 0.80 -0.6 44,895 - HMPREF1058_RS04400 0.83 +0.8 44,895 - HMPREF1058_RS04400 0.83 +2.1 44,909 + HMPREF1058_RS04400 0.88 -0.3 44,947 + -1.0 44,968 + -0.2 44,984 - -1.6 45,051 + +1.2 45,094 - +0.3 45,255 + +1.1 45,291 + -0.6 45,331 - HMPREF1058_RS04395 0.16 +1.2 45,391 - HMPREF1058_RS04395 0.36 -1.5 45,416 - HMPREF1058_RS04395 0.44 +4.9 45,420 + HMPREF1058_RS04395 0.46 -0.6 45,468 + HMPREF1058_RS04395 0.62 -0.7 45,474 + HMPREF1058_RS04395 0.64 +0.3 45,474 + HMPREF1058_RS04395 0.64 -1.0 45,475 - HMPREF1058_RS04395 0.64 +0.2 45,617 + +0.5 45,618 - -1.2
Or see this region's nucleotide sequence