Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0905

Experiment: Choline chloride 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0903 and Ga0059261_0904 are separated by 18 nucleotidesGa0059261_0904 and Ga0059261_0905 overlap by 4 nucleotidesGa0059261_0905 and Ga0059261_0906 are separated by 21 nucleotidesGa0059261_0906 and Ga0059261_0907 overlap by 4 nucleotidesGa0059261_0907 and Ga0059261_0908 are separated by 121 nucleotides Ga0059261_0903: Ga0059261_0903 - hypothetical protein, at 940,124 to 941,152 _0903 Ga0059261_0904: Ga0059261_0904 - hypothetical protein, at 941,171 to 941,491 _0904 Ga0059261_0905: Ga0059261_0905 - Protein of unknown function (DUF998), at 941,488 to 942,123 _0905 Ga0059261_0906: Ga0059261_0906 - Uncharacterized conserved protein, at 942,145 to 942,633 _0906 Ga0059261_0907: Ga0059261_0907 - Predicted transcriptional regulators, at 942,630 to 943,001 _0907 Ga0059261_0908: Ga0059261_0908 - chromate transporter, chromate ion transporter (CHR) family, at 943,123 to 944,481 _0908 Position (kb) 941 942 943Strain fitness (log2 ratio) -2 -1 0 1at 940.872 kb on - strand, within Ga0059261_0903at 940.872 kb on - strand, within Ga0059261_0903at 940.880 kb on + strand, within Ga0059261_0903at 940.880 kb on + strand, within Ga0059261_0903at 940.880 kb on + strand, within Ga0059261_0903at 940.880 kb on + strand, within Ga0059261_0903at 940.880 kb on + strand, within Ga0059261_0903at 940.880 kb on + strand, within Ga0059261_0903at 940.880 kb on + strand, within Ga0059261_0903at 940.880 kb on + strand, within Ga0059261_0903at 940.881 kb on - strand, within Ga0059261_0903at 940.881 kb on - strand, within Ga0059261_0903at 940.881 kb on - strand, within Ga0059261_0903at 940.881 kb on - strand, within Ga0059261_0903at 940.910 kb on + strand, within Ga0059261_0903at 940.910 kb on + strand, within Ga0059261_0903at 940.910 kb on + strand, within Ga0059261_0903at 940.911 kb on - strand, within Ga0059261_0903at 940.911 kb on - strand, within Ga0059261_0903at 940.970 kb on + strand, within Ga0059261_0903at 940.970 kb on + strand, within Ga0059261_0903at 940.970 kb on + strand, within Ga0059261_0903at 940.970 kb on + strand, within Ga0059261_0903at 940.970 kb on + strand, within Ga0059261_0903at 940.970 kb on + strand, within Ga0059261_0903at 940.970 kb on + strand, within Ga0059261_0903at 940.970 kb on + strand, within Ga0059261_0903at 940.971 kb on - strand, within Ga0059261_0903at 940.971 kb on - strand, within Ga0059261_0903at 940.971 kb on - strand, within Ga0059261_0903at 940.971 kb on - strand, within Ga0059261_0903at 940.971 kb on - strand, within Ga0059261_0903at 940.971 kb on - strand, within Ga0059261_0903at 940.971 kb on - strand, within Ga0059261_0903at 940.971 kb on - strand, within Ga0059261_0903at 940.971 kb on - strand, within Ga0059261_0903at 940.980 kb on - strand, within Ga0059261_0903at 941.084 kb on + strandat 941.084 kb on + strandat 941.085 kb on - strandat 941.087 kb on + strandat 941.087 kb on + strandat 941.087 kb on + strandat 941.087 kb on + strandat 941.087 kb on + strandat 941.088 kb on - strandat 941.088 kb on - strandat 941.088 kb on - strandat 941.096 kb on + strandat 941.096 kb on + strandat 941.097 kb on - strandat 941.097 kb on - strandat 941.097 kb on - strandat 941.097 kb on - strandat 941.231 kb on + strand, within Ga0059261_0904at 941.231 kb on + strand, within Ga0059261_0904at 941.231 kb on + strand, within Ga0059261_0904at 941.231 kb on + strand, within Ga0059261_0904at 941.231 kb on + strand, within Ga0059261_0904at 941.231 kb on + strand, within Ga0059261_0904at 941.232 kb on - strand, within Ga0059261_0904at 941.232 kb on - strandat 941.232 kb on - strand, within Ga0059261_0904at 941.233 kb on + strand, within Ga0059261_0904at 941.234 kb on - strand, within Ga0059261_0904at 941.258 kb on + strand, within Ga0059261_0904at 941.258 kb on + strand, within Ga0059261_0904at 941.258 kb on + strand, within Ga0059261_0904at 941.258 kb on + strand, within Ga0059261_0904at 941.258 kb on + strand, within Ga0059261_0904at 941.258 kb on + strand, within Ga0059261_0904at 941.259 kb on - strand, within Ga0059261_0904at 941.259 kb on - strand, within Ga0059261_0904at 941.271 kb on + strand, within Ga0059261_0904at 941.272 kb on - strand, within Ga0059261_0904at 941.272 kb on - strand, within Ga0059261_0904at 941.272 kb on - strand, within Ga0059261_0904at 941.402 kb on + strand, within Ga0059261_0904at 941.402 kb on + strand, within Ga0059261_0904at 941.402 kb on + strand, within Ga0059261_0904at 941.402 kb on + strand, within Ga0059261_0904at 941.402 kb on + strand, within Ga0059261_0904at 941.402 kb on + strand, within Ga0059261_0904at 941.403 kb on - strand, within Ga0059261_0904at 941.403 kb on - strand, within Ga0059261_0904at 941.403 kb on - strand, within Ga0059261_0904at 941.403 kb on - strand, within Ga0059261_0904at 941.406 kb on - strand, within Ga0059261_0904at 941.455 kb on + strand, within Ga0059261_0904at 941.455 kb on + strand, within Ga0059261_0904at 941.455 kb on + strand, within Ga0059261_0904at 941.456 kb on - strand, within Ga0059261_0904at 941.456 kb on - strand, within Ga0059261_0904at 941.456 kb on - strandat 941.490 kb on - strandat 941.555 kb on + strand, within Ga0059261_0905at 941.555 kb on + strand, within Ga0059261_0905at 941.555 kb on + strand, within Ga0059261_0905at 941.556 kb on - strand, within Ga0059261_0905at 941.556 kb on - strand, within Ga0059261_0905at 941.556 kb on - strand, within Ga0059261_0905at 941.556 kb on - strand, within Ga0059261_0905at 941.556 kb on - strand, within Ga0059261_0905at 941.556 kb on - strand, within Ga0059261_0905at 941.648 kb on - strand, within Ga0059261_0905at 941.745 kb on + strand, within Ga0059261_0905at 941.746 kb on - strand, within Ga0059261_0905at 941.819 kb on + strand, within Ga0059261_0905at 941.819 kb on + strand, within Ga0059261_0905at 941.819 kb on + strandat 941.819 kb on + strand, within Ga0059261_0905at 941.820 kb on - strand, within Ga0059261_0905at 941.820 kb on - strand, within Ga0059261_0905at 941.823 kb on + strand, within Ga0059261_0905at 941.876 kb on + strand, within Ga0059261_0905at 941.876 kb on + strand, within Ga0059261_0905at 941.876 kb on + strand, within Ga0059261_0905at 941.877 kb on - strand, within Ga0059261_0905at 941.877 kb on - strand, within Ga0059261_0905at 941.949 kb on + strand, within Ga0059261_0905at 941.949 kb on + strand, within Ga0059261_0905at 942.108 kb on + strandat 942.109 kb on - strandat 942.109 kb on - strandat 942.146 kb on + strandat 942.146 kb on + strandat 942.146 kb on + strandat 942.146 kb on + strandat 942.147 kb on - strandat 942.147 kb on - strandat 942.147 kb on - strandat 942.269 kb on + strand, within Ga0059261_0906at 942.270 kb on - strand, within Ga0059261_0906at 942.270 kb on - strand, within Ga0059261_0906at 942.302 kb on + strand, within Ga0059261_0906at 942.302 kb on + strand, within Ga0059261_0906at 942.303 kb on - strand, within Ga0059261_0906at 942.398 kb on + strand, within Ga0059261_0906at 942.398 kb on + strand, within Ga0059261_0906at 942.399 kb on - strand, within Ga0059261_0906at 942.399 kb on - strand, within Ga0059261_0906at 942.399 kb on - strand, within Ga0059261_0906at 942.399 kb on - strand, within Ga0059261_0906at 942.399 kb on - strand, within Ga0059261_0906at 942.576 kb on + strandat 942.664 kb on + strandat 942.664 kb on + strandat 942.665 kb on - strandat 942.665 kb on - strandat 942.665 kb on - strandat 942.665 kb on - strandat 942.665 kb on - strandat 942.757 kb on + strand, within Ga0059261_0907at 942.757 kb on + strand, within Ga0059261_0907at 942.757 kb on + strand, within Ga0059261_0907at 942.757 kb on + strand, within Ga0059261_0907at 942.757 kb on + strand, within Ga0059261_0907at 942.757 kb on + strand, within Ga0059261_0907at 942.757 kb on + strand, within Ga0059261_0907at 942.758 kb on - strand, within Ga0059261_0907at 942.758 kb on - strand, within Ga0059261_0907at 942.850 kb on + strand, within Ga0059261_0907at 942.850 kb on + strand, within Ga0059261_0907at 942.850 kb on + strand, within Ga0059261_0907at 942.851 kb on - strand, within Ga0059261_0907at 943.007 kb on + strandat 943.007 kb on + strandat 943.007 kb on + strandat 943.007 kb on + strandat 943.007 kb on + strandat 943.007 kb on + strandat 943.008 kb on - strandat 943.008 kb on - strandat 943.008 kb on - strandat 943.008 kb on - strandat 943.008 kb on - strandat 943.008 kb on - strandat 943.008 kb on - strandat 943.008 kb on - strandat 943.008 kb on - strandat 943.035 kb on - strandat 943.052 kb on - strandat 943.120 kb on + strandat 943.120 kb on + strandat 943.121 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 40 mM
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940,872 - Ga0059261_0903 0.73 -0.9
940,872 - Ga0059261_0903 0.73 +0.5
940,880 + Ga0059261_0903 0.73 -0.5
940,880 + Ga0059261_0903 0.73 -0.1
940,880 + Ga0059261_0903 0.73 +0.7
940,880 + Ga0059261_0903 0.73 +0.1
940,880 + Ga0059261_0903 0.73 +0.3
940,880 + Ga0059261_0903 0.73 +0.7
940,880 + Ga0059261_0903 0.73 +0.0
940,880 + Ga0059261_0903 0.73 +0.4
940,881 - Ga0059261_0903 0.74 -1.1
940,881 - Ga0059261_0903 0.74 -0.7
940,881 - Ga0059261_0903 0.74 -0.3
940,881 - Ga0059261_0903 0.74 -0.4
940,910 + Ga0059261_0903 0.76 -0.2
940,910 + Ga0059261_0903 0.76 -0.2
940,910 + Ga0059261_0903 0.76 +0.0
940,911 - Ga0059261_0903 0.76 +0.1
940,911 - Ga0059261_0903 0.76 +0.4
940,970 + Ga0059261_0903 0.82 -0.0
940,970 + Ga0059261_0903 0.82 +0.1
940,970 + Ga0059261_0903 0.82 +0.6
940,970 + Ga0059261_0903 0.82 -0.4
940,970 + Ga0059261_0903 0.82 -0.7
940,970 + Ga0059261_0903 0.82 -0.3
940,970 + Ga0059261_0903 0.82 -0.8
940,970 + Ga0059261_0903 0.82 +0.5
940,971 - Ga0059261_0903 0.82 -0.1
940,971 - Ga0059261_0903 0.82 -0.3
940,971 - Ga0059261_0903 0.82 -0.7
940,971 - Ga0059261_0903 0.82 -0.7
940,971 - Ga0059261_0903 0.82 +1.6
940,971 - Ga0059261_0903 0.82 -0.7
940,971 - Ga0059261_0903 0.82 +0.1
940,971 - Ga0059261_0903 0.82 -0.5
940,971 - Ga0059261_0903 0.82 +0.1
940,980 - Ga0059261_0903 0.83 -0.7
941,084 + +0.5
941,084 + +0.1
941,085 - -0.4
941,087 + +0.1
941,087 + +0.5
941,087 + +0.5
941,087 + -0.6
941,087 + +0.9
941,088 - +0.7
941,088 - -1.3
941,088 - +0.5
941,096 + +0.1
941,096 + -0.0
941,097 - +0.3
941,097 - +0.5
941,097 - +0.5
941,097 - +0.0
941,231 + Ga0059261_0904 0.19 -0.5
941,231 + Ga0059261_0904 0.19 +1.0
941,231 + Ga0059261_0904 0.19 -1.8
941,231 + Ga0059261_0904 0.19 +0.7
941,231 + Ga0059261_0904 0.19 +0.8
941,231 + Ga0059261_0904 0.19 -0.5
941,232 - Ga0059261_0904 0.19 +0.1
941,232 - -0.7
941,232 - Ga0059261_0904 0.19 +0.3
941,233 + Ga0059261_0904 0.19 -1.2
941,234 - Ga0059261_0904 0.20 -1.4
941,258 + Ga0059261_0904 0.27 +0.3
941,258 + Ga0059261_0904 0.27 +0.1
941,258 + Ga0059261_0904 0.27 +0.6
941,258 + Ga0059261_0904 0.27 +0.1
941,258 + Ga0059261_0904 0.27 +0.3
941,258 + Ga0059261_0904 0.27 +0.3
941,259 - Ga0059261_0904 0.27 -1.0
941,259 - Ga0059261_0904 0.27 -0.4
941,271 + Ga0059261_0904 0.31 +0.3
941,272 - Ga0059261_0904 0.31 -0.1
941,272 - Ga0059261_0904 0.31 +0.7
941,272 - Ga0059261_0904 0.31 -0.3
941,402 + Ga0059261_0904 0.72 -1.6
941,402 + Ga0059261_0904 0.72 +0.7
941,402 + Ga0059261_0904 0.72 +0.2
941,402 + Ga0059261_0904 0.72 -0.6
941,402 + Ga0059261_0904 0.72 +0.2
941,402 + Ga0059261_0904 0.72 -0.5
941,403 - Ga0059261_0904 0.72 +0.2
941,403 - Ga0059261_0904 0.72 -0.7
941,403 - Ga0059261_0904 0.72 +1.2
941,403 - Ga0059261_0904 0.72 -1.1
941,406 - Ga0059261_0904 0.73 -0.2
941,455 + Ga0059261_0904 0.88 -0.2
941,455 + Ga0059261_0904 0.88 +0.2
941,455 + Ga0059261_0904 0.88 +0.4
941,456 - Ga0059261_0904 0.89 +0.3
941,456 - Ga0059261_0904 0.89 -0.1
941,456 - -0.4
941,490 - -0.5
941,555 + Ga0059261_0905 0.11 +0.6
941,555 + Ga0059261_0905 0.11 -0.4
941,555 + Ga0059261_0905 0.11 -0.0
941,556 - Ga0059261_0905 0.11 +0.4
941,556 - Ga0059261_0905 0.11 +0.6
941,556 - Ga0059261_0905 0.11 +0.5
941,556 - Ga0059261_0905 0.11 +0.9
941,556 - Ga0059261_0905 0.11 +0.1
941,556 - Ga0059261_0905 0.11 +1.1
941,648 - Ga0059261_0905 0.25 +0.3
941,745 + Ga0059261_0905 0.40 +0.6
941,746 - Ga0059261_0905 0.41 -0.3
941,819 + Ga0059261_0905 0.52 -0.6
941,819 + Ga0059261_0905 0.52 +1.4
941,819 + +0.5
941,819 + Ga0059261_0905 0.52 +0.3
941,820 - Ga0059261_0905 0.52 -0.7
941,820 - Ga0059261_0905 0.52 +0.8
941,823 + Ga0059261_0905 0.53 -0.0
941,876 + Ga0059261_0905 0.61 +0.1
941,876 + Ga0059261_0905 0.61 -0.3
941,876 + Ga0059261_0905 0.61 +0.5
941,877 - Ga0059261_0905 0.61 +1.5
941,877 - Ga0059261_0905 0.61 -0.0
941,949 + Ga0059261_0905 0.72 -0.6
941,949 + Ga0059261_0905 0.72 -0.4
942,108 + -0.5
942,109 - +0.5
942,109 - +0.9
942,146 + +0.1
942,146 + -0.1
942,146 + -1.0
942,146 + -0.3
942,147 - -0.3
942,147 - -0.8
942,147 - +0.0
942,269 + Ga0059261_0906 0.25 +0.3
942,270 - Ga0059261_0906 0.26 -0.4
942,270 - Ga0059261_0906 0.26 -0.7
942,302 + Ga0059261_0906 0.32 +0.7
942,302 + Ga0059261_0906 0.32 +0.4
942,303 - Ga0059261_0906 0.32 +0.1
942,398 + Ga0059261_0906 0.52 +0.7
942,398 + Ga0059261_0906 0.52 +1.2
942,399 - Ga0059261_0906 0.52 -0.1
942,399 - Ga0059261_0906 0.52 -0.7
942,399 - Ga0059261_0906 0.52 -0.5
942,399 - Ga0059261_0906 0.52 +0.1
942,399 - Ga0059261_0906 0.52 +0.1
942,576 + -0.7
942,664 + +0.4
942,664 + -0.4
942,665 - -1.5
942,665 - -0.7
942,665 - +0.3
942,665 - -0.3
942,665 - +0.3
942,757 + Ga0059261_0907 0.34 -0.3
942,757 + Ga0059261_0907 0.34 +0.6
942,757 + Ga0059261_0907 0.34 -0.0
942,757 + Ga0059261_0907 0.34 -0.6
942,757 + Ga0059261_0907 0.34 -0.8
942,757 + Ga0059261_0907 0.34 -1.0
942,757 + Ga0059261_0907 0.34 +0.4
942,758 - Ga0059261_0907 0.34 -0.4
942,758 - Ga0059261_0907 0.34 +0.8
942,850 + Ga0059261_0907 0.59 -0.0
942,850 + Ga0059261_0907 0.59 -0.7
942,850 + Ga0059261_0907 0.59 -0.2
942,851 - Ga0059261_0907 0.59 +0.1
943,007 + -0.6
943,007 + -0.1
943,007 + -0.0
943,007 + -0.3
943,007 + +1.1
943,007 + +0.8
943,008 - +0.4
943,008 - -0.7
943,008 - +0.0
943,008 - -0.1
943,008 - -0.1
943,008 - +0.5
943,008 - -0.3
943,008 - +0.3
943,008 - +0.5
943,035 - -0.7
943,052 - +0.4
943,120 + +0.3
943,120 + +0.9
943,121 - +0.4

Or see this region's nucleotide sequence