Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0726

Experiment: Choline chloride 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0725 and Ga0059261_0726 are separated by 238 nucleotidesGa0059261_0726 and Ga0059261_0727 overlap by 4 nucleotidesGa0059261_0727 and Ga0059261_0728 overlap by 8 nucleotides Ga0059261_0725: Ga0059261_0725 - Fructose-1,6-bisphosphate aldolase, at 757,440 to 758,345 _0725 Ga0059261_0726: Ga0059261_0726 - hypothetical protein, at 758,584 to 758,976 _0726 Ga0059261_0727: Ga0059261_0727 - conserved hypothetical protein, at 758,973 to 759,629 _0727 Ga0059261_0728: Ga0059261_0728 - phosphoglycerate kinase (EC 2.7.2.3), at 759,622 to 760,815 _0728 Position (kb) 758 759Strain fitness (log2 ratio) -3 -2 -1 0 1at 758.224 kb on + strand, within Ga0059261_0725at 758.225 kb on - strand, within Ga0059261_0725at 758.245 kb on + strandat 758.245 kb on + strand, within Ga0059261_0725at 758.246 kb on - strand, within Ga0059261_0725at 758.298 kb on - strandat 758.352 kb on + strandat 758.353 kb on - strandat 758.403 kb on + strandat 758.404 kb on - strandat 758.404 kb on - strandat 758.416 kb on + strandat 758.416 kb on + strandat 758.417 kb on - strandat 758.417 kb on - strandat 758.417 kb on - strandat 758.531 kb on - strandat 758.531 kb on - strandat 758.585 kb on + strandat 758.585 kb on + strandat 758.864 kb on + strand, within Ga0059261_0726at 758.865 kb on - strand, within Ga0059261_0726at 758.865 kb on - strand, within Ga0059261_0726at 758.865 kb on - strand, within Ga0059261_0726at 758.865 kb on - strand, within Ga0059261_0726at 758.954 kb on + strandat 758.954 kb on + strandat 758.954 kb on + strandat 758.955 kb on - strandat 758.955 kb on - strandat 758.955 kb on - strandat 758.993 kb on + strandat 758.993 kb on + strandat 758.993 kb on + strandat 758.993 kb on + strandat 758.993 kb on + strandat 758.994 kb on - strandat 759.031 kb on + strandat 759.032 kb on - strandat 759.207 kb on + strand, within Ga0059261_0727at 759.207 kb on + strand, within Ga0059261_0727at 759.207 kb on + strand, within Ga0059261_0727at 759.207 kb on + strand, within Ga0059261_0727at 759.207 kb on + strandat 759.208 kb on - strand, within Ga0059261_0727at 759.208 kb on - strand, within Ga0059261_0727at 759.229 kb on + strand, within Ga0059261_0727at 759.230 kb on - strand, within Ga0059261_0727at 759.244 kb on + strand, within Ga0059261_0727at 759.244 kb on + strand, within Ga0059261_0727at 759.244 kb on + strand, within Ga0059261_0727at 759.244 kb on + strand, within Ga0059261_0727at 759.244 kb on + strand, within Ga0059261_0727at 759.244 kb on + strand, within Ga0059261_0727at 759.244 kb on + strand, within Ga0059261_0727at 759.244 kb on + strand, within Ga0059261_0727at 759.245 kb on - strand, within Ga0059261_0727at 759.245 kb on - strand, within Ga0059261_0727at 759.245 kb on - strand, within Ga0059261_0727at 759.245 kb on - strand, within Ga0059261_0727at 759.245 kb on - strand, within Ga0059261_0727at 759.245 kb on - strand, within Ga0059261_0727at 759.245 kb on - strand, within Ga0059261_0727at 759.247 kb on + strand, within Ga0059261_0727at 759.247 kb on + strand, within Ga0059261_0727at 759.247 kb on + strand, within Ga0059261_0727at 759.247 kb on + strand, within Ga0059261_0727at 759.247 kb on + strand, within Ga0059261_0727at 759.247 kb on + strand, within Ga0059261_0727at 759.247 kb on + strand, within Ga0059261_0727at 759.247 kb on + strand, within Ga0059261_0727at 759.247 kb on + strand, within Ga0059261_0727at 759.247 kb on + strand, within Ga0059261_0727at 759.248 kb on - strand, within Ga0059261_0727at 759.248 kb on - strand, within Ga0059261_0727at 759.248 kb on - strand, within Ga0059261_0727at 759.248 kb on - strand, within Ga0059261_0727at 759.248 kb on - strand, within Ga0059261_0727at 759.248 kb on - strand, within Ga0059261_0727at 759.248 kb on - strand, within Ga0059261_0727at 759.248 kb on - strand, within Ga0059261_0727at 759.248 kb on - strand, within Ga0059261_0727at 759.555 kb on + strand, within Ga0059261_0727at 759.556 kb on - strand, within Ga0059261_0727at 759.556 kb on - strand, within Ga0059261_0727

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 40 mM
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758,224 + Ga0059261_0725 0.87 +0.7
758,225 - Ga0059261_0725 0.87 +0.3
758,245 + -1.1
758,245 + Ga0059261_0725 0.89 +0.9
758,246 - Ga0059261_0725 0.89 -0.8
758,298 - -0.2
758,352 + -0.4
758,353 - +0.0
758,403 + -0.3
758,404 - +0.7
758,404 - +0.0
758,416 + -0.6
758,416 + +0.1
758,417 - -0.2
758,417 - -0.4
758,417 - +0.4
758,531 - -0.1
758,531 - +0.7
758,585 + -0.6
758,585 + +0.2
758,864 + Ga0059261_0726 0.71 +0.6
758,865 - Ga0059261_0726 0.72 +0.9
758,865 - Ga0059261_0726 0.72 +1.1
758,865 - Ga0059261_0726 0.72 -1.3
758,865 - Ga0059261_0726 0.72 -0.3
758,954 + -0.3
758,954 + -1.4
758,954 + +0.0
758,955 - +0.0
758,955 - -0.3
758,955 - +0.2
758,993 + +0.3
758,993 + -0.5
758,993 + -0.9
758,993 + +0.2
758,993 + +0.3
758,994 - +0.3
759,031 + -0.1
759,032 - +0.3
759,207 + Ga0059261_0727 0.36 -0.1
759,207 + Ga0059261_0727 0.36 +0.9
759,207 + Ga0059261_0727 0.36 +0.9
759,207 + Ga0059261_0727 0.36 +0.1
759,207 + -1.4
759,208 - Ga0059261_0727 0.36 -1.6
759,208 - Ga0059261_0727 0.36 +0.2
759,229 + Ga0059261_0727 0.39 -0.4
759,230 - Ga0059261_0727 0.39 +0.3
759,244 + Ga0059261_0727 0.41 +0.8
759,244 + Ga0059261_0727 0.41 -0.4
759,244 + Ga0059261_0727 0.41 -0.7
759,244 + Ga0059261_0727 0.41 +0.3
759,244 + Ga0059261_0727 0.41 +0.5
759,244 + Ga0059261_0727 0.41 +0.3
759,244 + Ga0059261_0727 0.41 -0.4
759,244 + Ga0059261_0727 0.41 -2.2
759,245 - Ga0059261_0727 0.41 -3.0
759,245 - Ga0059261_0727 0.41 -0.8
759,245 - Ga0059261_0727 0.41 -0.5
759,245 - Ga0059261_0727 0.41 +0.8
759,245 - Ga0059261_0727 0.41 +0.3
759,245 - Ga0059261_0727 0.41 +0.6
759,245 - Ga0059261_0727 0.41 +0.1
759,247 + Ga0059261_0727 0.42 +0.9
759,247 + Ga0059261_0727 0.42 -0.8
759,247 + Ga0059261_0727 0.42 -0.2
759,247 + Ga0059261_0727 0.42 +0.9
759,247 + Ga0059261_0727 0.42 +0.1
759,247 + Ga0059261_0727 0.42 -0.5
759,247 + Ga0059261_0727 0.42 -0.0
759,247 + Ga0059261_0727 0.42 +0.4
759,247 + Ga0059261_0727 0.42 +0.4
759,247 + Ga0059261_0727 0.42 +0.2
759,248 - Ga0059261_0727 0.42 +0.4
759,248 - Ga0059261_0727 0.42 -0.1
759,248 - Ga0059261_0727 0.42 +0.1
759,248 - Ga0059261_0727 0.42 +0.9
759,248 - Ga0059261_0727 0.42 +0.1
759,248 - Ga0059261_0727 0.42 +0.5
759,248 - Ga0059261_0727 0.42 +0.3
759,248 - Ga0059261_0727 0.42 +0.1
759,248 - Ga0059261_0727 0.42 +0.0
759,555 + Ga0059261_0727 0.89 +0.2
759,556 - Ga0059261_0727 0.89 -0.1
759,556 - Ga0059261_0727 0.89 -0.7

Or see this region's nucleotide sequence