Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0653

Experiment: Choline chloride 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0652 and Ga0059261_0653 are separated by 11 nucleotidesGa0059261_0653 and Ga0059261_0654 are separated by 76 nucleotidesGa0059261_0654 and Ga0059261_0655 overlap by 4 nucleotides Ga0059261_0652: Ga0059261_0652 - Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain, at 692,467 to 693,528 _0652 Ga0059261_0653: Ga0059261_0653 - Response regulator receiver domain, at 693,540 to 693,905 _0653 Ga0059261_0654: Ga0059261_0654 - Chemotaxis signal transduction protein, at 693,982 to 694,413 _0654 Ga0059261_0655: Ga0059261_0655 - Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/Hpt domain/CheW-like domain/Signal transducing histidine kinase, homodimeric domain, at 694,410 to 696,713 _0655 Position (kb) 693 694Strain fitness (log2 ratio) -2 -1 0 1 2at 692.768 kb on + strand, within Ga0059261_0652at 692.768 kb on + strand, within Ga0059261_0652at 692.768 kb on + strand, within Ga0059261_0652at 692.768 kb on + strand, within Ga0059261_0652at 692.768 kb on + strand, within Ga0059261_0652at 692.768 kb on + strand, within Ga0059261_0652at 692.768 kb on + strand, within Ga0059261_0652at 692.768 kb on + strand, within Ga0059261_0652at 692.768 kb on + strand, within Ga0059261_0652at 692.768 kb on + strand, within Ga0059261_0652at 692.769 kb on - strand, within Ga0059261_0652at 692.769 kb on - strand, within Ga0059261_0652at 692.769 kb on - strand, within Ga0059261_0652at 692.769 kb on - strand, within Ga0059261_0652at 692.769 kb on - strand, within Ga0059261_0652at 692.769 kb on - strand, within Ga0059261_0652at 692.769 kb on - strand, within Ga0059261_0652at 692.769 kb on - strand, within Ga0059261_0652at 692.769 kb on - strand, within Ga0059261_0652at 692.771 kb on + strand, within Ga0059261_0652at 692.771 kb on + strand, within Ga0059261_0652at 692.771 kb on + strand, within Ga0059261_0652at 692.771 kb on + strand, within Ga0059261_0652at 692.771 kb on + strand, within Ga0059261_0652at 692.771 kb on + strand, within Ga0059261_0652at 692.771 kb on + strand, within Ga0059261_0652at 692.771 kb on + strand, within Ga0059261_0652at 692.772 kb on - strand, within Ga0059261_0652at 692.772 kb on - strand, within Ga0059261_0652at 692.772 kb on - strand, within Ga0059261_0652at 692.772 kb on - strand, within Ga0059261_0652at 692.772 kb on - strand, within Ga0059261_0652at 692.772 kb on - strand, within Ga0059261_0652at 692.772 kb on - strand, within Ga0059261_0652at 692.847 kb on + strand, within Ga0059261_0652at 692.847 kb on + strand, within Ga0059261_0652at 692.847 kb on + strand, within Ga0059261_0652at 692.885 kb on - strand, within Ga0059261_0652at 692.906 kb on + strand, within Ga0059261_0652at 692.907 kb on - strand, within Ga0059261_0652at 693.172 kb on - strand, within Ga0059261_0652at 693.172 kb on - strand, within Ga0059261_0652at 693.514 kb on + strandat 693.515 kb on - strandat 693.522 kb on + strandat 693.522 kb on + strandat 693.523 kb on - strandat 693.528 kb on + strandat 693.528 kb on + strandat 693.528 kb on + strandat 693.528 kb on + strandat 693.528 kb on + strandat 693.528 kb on + strandat 693.529 kb on - strandat 693.529 kb on - strandat 693.529 kb on - strandat 693.529 kb on - strandat 693.529 kb on - strandat 693.604 kb on + strand, within Ga0059261_0653at 693.604 kb on + strand, within Ga0059261_0653at 693.604 kb on + strand, within Ga0059261_0653at 693.605 kb on - strand, within Ga0059261_0653at 693.605 kb on - strand, within Ga0059261_0653at 693.605 kb on - strand, within Ga0059261_0653at 693.605 kb on - strand, within Ga0059261_0653at 693.605 kb on - strand, within Ga0059261_0653at 693.605 kb on - strand, within Ga0059261_0653at 693.605 kb on - strand, within Ga0059261_0653at 693.605 kb on - strand, within Ga0059261_0653at 693.605 kb on - strand, within Ga0059261_0653at 693.605 kb on - strand, within Ga0059261_0653at 693.605 kb on - strand, within Ga0059261_0653at 693.605 kb on - strand, within Ga0059261_0653at 693.605 kb on - strand, within Ga0059261_0653at 693.605 kb on - strand, within Ga0059261_0653at 693.639 kb on - strand, within Ga0059261_0653at 693.640 kb on + strand, within Ga0059261_0653at 693.640 kb on + strand, within Ga0059261_0653at 693.640 kb on + strand, within Ga0059261_0653at 693.640 kb on + strand, within Ga0059261_0653at 693.640 kb on + strand, within Ga0059261_0653at 693.640 kb on + strand, within Ga0059261_0653at 693.640 kb on + strand, within Ga0059261_0653at 693.640 kb on + strand, within Ga0059261_0653at 693.640 kb on + strand, within Ga0059261_0653at 693.641 kb on - strand, within Ga0059261_0653at 693.641 kb on - strand, within Ga0059261_0653at 693.641 kb on - strand, within Ga0059261_0653at 693.641 kb on - strand, within Ga0059261_0653at 693.641 kb on - strand, within Ga0059261_0653at 693.641 kb on - strandat 693.641 kb on - strand, within Ga0059261_0653at 693.641 kb on - strand, within Ga0059261_0653at 693.641 kb on - strand, within Ga0059261_0653at 693.641 kb on - strand, within Ga0059261_0653at 693.960 kb on + strandat 693.960 kb on + strandat 693.960 kb on + strandat 693.960 kb on + strandat 693.961 kb on - strandat 693.961 kb on - strandat 693.961 kb on - strandat 693.973 kb on - strandat 694.038 kb on + strand, within Ga0059261_0654at 694.039 kb on - strand, within Ga0059261_0654at 694.166 kb on + strand, within Ga0059261_0654at 694.166 kb on + strand, within Ga0059261_0654at 694.166 kb on + strand, within Ga0059261_0654at 694.166 kb on + strand, within Ga0059261_0654at 694.166 kb on + strand, within Ga0059261_0654at 694.166 kb on + strand, within Ga0059261_0654at 694.166 kb on + strand, within Ga0059261_0654at 694.167 kb on - strand, within Ga0059261_0654at 694.167 kb on - strand, within Ga0059261_0654at 694.167 kb on - strand, within Ga0059261_0654at 694.167 kb on - strand, within Ga0059261_0654at 694.167 kb on - strand, within Ga0059261_0654at 694.243 kb on - strand, within Ga0059261_0654at 694.462 kb on + strandat 694.463 kb on - strandat 694.463 kb on - strandat 694.603 kb on + strandat 694.633 kb on + strandat 694.791 kb on + strand, within Ga0059261_0655at 694.830 kb on - strand, within Ga0059261_0655at 694.878 kb on + strand, within Ga0059261_0655at 694.879 kb on - strand, within Ga0059261_0655

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 40 mM
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692,768 + Ga0059261_0652 0.28 -0.1
692,768 + Ga0059261_0652 0.28 +0.2
692,768 + Ga0059261_0652 0.28 -0.1
692,768 + Ga0059261_0652 0.28 +0.5
692,768 + Ga0059261_0652 0.28 -0.5
692,768 + Ga0059261_0652 0.28 -0.8
692,768 + Ga0059261_0652 0.28 -0.6
692,768 + Ga0059261_0652 0.28 +0.1
692,768 + Ga0059261_0652 0.28 -0.3
692,768 + Ga0059261_0652 0.28 -0.9
692,769 - Ga0059261_0652 0.28 -1.0
692,769 - Ga0059261_0652 0.28 -0.3
692,769 - Ga0059261_0652 0.28 -0.5
692,769 - Ga0059261_0652 0.28 +0.8
692,769 - Ga0059261_0652 0.28 -0.8
692,769 - Ga0059261_0652 0.28 -0.6
692,769 - Ga0059261_0652 0.28 -0.1
692,769 - Ga0059261_0652 0.28 -0.6
692,769 - Ga0059261_0652 0.28 -0.2
692,771 + Ga0059261_0652 0.29 -0.0
692,771 + Ga0059261_0652 0.29 +0.2
692,771 + Ga0059261_0652 0.29 +0.7
692,771 + Ga0059261_0652 0.29 -0.1
692,771 + Ga0059261_0652 0.29 +0.1
692,771 + Ga0059261_0652 0.29 -0.3
692,771 + Ga0059261_0652 0.29 +0.2
692,771 + Ga0059261_0652 0.29 +0.2
692,772 - Ga0059261_0652 0.29 -0.5
692,772 - Ga0059261_0652 0.29 +0.2
692,772 - Ga0059261_0652 0.29 +0.2
692,772 - Ga0059261_0652 0.29 +0.4
692,772 - Ga0059261_0652 0.29 +0.9
692,772 - Ga0059261_0652 0.29 +0.2
692,772 - Ga0059261_0652 0.29 +0.1
692,847 + Ga0059261_0652 0.36 -0.0
692,847 + Ga0059261_0652 0.36 -0.3
692,847 + Ga0059261_0652 0.36 -0.6
692,885 - Ga0059261_0652 0.39 -1.3
692,906 + Ga0059261_0652 0.41 -0.1
692,907 - Ga0059261_0652 0.41 +0.6
693,172 - Ga0059261_0652 0.66 +0.5
693,172 - Ga0059261_0652 0.66 +0.1
693,514 + -0.9
693,515 - +0.5
693,522 + -1.2
693,522 + -0.3
693,523 - -0.1
693,528 + -0.5
693,528 + -0.7
693,528 + -0.8
693,528 + +0.2
693,528 + +0.2
693,528 + -0.0
693,529 - +0.3
693,529 - +1.0
693,529 - -0.4
693,529 - -0.4
693,529 - -0.2
693,604 + Ga0059261_0653 0.17 +0.5
693,604 + Ga0059261_0653 0.17 -0.2
693,604 + Ga0059261_0653 0.17 -0.0
693,605 - Ga0059261_0653 0.18 +0.5
693,605 - Ga0059261_0653 0.18 +1.2
693,605 - Ga0059261_0653 0.18 +0.4
693,605 - Ga0059261_0653 0.18 +0.5
693,605 - Ga0059261_0653 0.18 +0.5
693,605 - Ga0059261_0653 0.18 -0.2
693,605 - Ga0059261_0653 0.18 -0.3
693,605 - Ga0059261_0653 0.18 -0.8
693,605 - Ga0059261_0653 0.18 +0.6
693,605 - Ga0059261_0653 0.18 +0.6
693,605 - Ga0059261_0653 0.18 +0.3
693,605 - Ga0059261_0653 0.18 -0.3
693,605 - Ga0059261_0653 0.18 +0.1
693,605 - Ga0059261_0653 0.18 +1.2
693,639 - Ga0059261_0653 0.27 +0.2
693,640 + Ga0059261_0653 0.27 +1.2
693,640 + Ga0059261_0653 0.27 +0.2
693,640 + Ga0059261_0653 0.27 -0.3
693,640 + Ga0059261_0653 0.27 +0.3
693,640 + Ga0059261_0653 0.27 -0.0
693,640 + Ga0059261_0653 0.27 -0.3
693,640 + Ga0059261_0653 0.27 -0.2
693,640 + Ga0059261_0653 0.27 +0.8
693,640 + Ga0059261_0653 0.27 +1.0
693,641 - Ga0059261_0653 0.28 +0.4
693,641 - Ga0059261_0653 0.28 +0.6
693,641 - Ga0059261_0653 0.28 +0.7
693,641 - Ga0059261_0653 0.28 +0.1
693,641 - Ga0059261_0653 0.28 -0.2
693,641 - +1.4
693,641 - Ga0059261_0653 0.28 +0.1
693,641 - Ga0059261_0653 0.28 +0.1
693,641 - Ga0059261_0653 0.28 -0.0
693,641 - Ga0059261_0653 0.28 -0.3
693,960 + +0.3
693,960 + +0.2
693,960 + -0.0
693,960 + +0.2
693,961 - -0.8
693,961 - -1.3
693,961 - +1.9
693,973 - -0.2
694,038 + Ga0059261_0654 0.13 +1.9
694,039 - Ga0059261_0654 0.13 -0.0
694,166 + Ga0059261_0654 0.43 +0.7
694,166 + Ga0059261_0654 0.43 +0.2
694,166 + Ga0059261_0654 0.43 +0.1
694,166 + Ga0059261_0654 0.43 -2.2
694,166 + Ga0059261_0654 0.43 -2.0
694,166 + Ga0059261_0654 0.43 -0.2
694,166 + Ga0059261_0654 0.43 -0.6
694,167 - Ga0059261_0654 0.43 +0.6
694,167 - Ga0059261_0654 0.43 +1.4
694,167 - Ga0059261_0654 0.43 +2.0
694,167 - Ga0059261_0654 0.43 +0.6
694,167 - Ga0059261_0654 0.43 -0.5
694,243 - Ga0059261_0654 0.60 -0.3
694,462 + -0.2
694,463 - -0.7
694,463 - +0.1
694,603 + +0.2
694,633 + +2.3
694,791 + Ga0059261_0655 0.17 +1.6
694,830 - Ga0059261_0655 0.18 +0.1
694,878 + Ga0059261_0655 0.20 +0.3
694,879 - Ga0059261_0655 0.20 +0.1

Or see this region's nucleotide sequence