Experiment: Choline chloride 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0243 and Ga0059261_0244 are separated by 59 nucleotides Ga0059261_0244 and Ga0059261_0245 are separated by 104 nucleotides
Ga0059261_0243: Ga0059261_0243 - Major Facilitator Superfamily, at 232,905 to 234,578
_0243
Ga0059261_0244: Ga0059261_0244 - FOG: CheY-like receiver, at 234,638 to 235,069
_0244
Ga0059261_0245: Ga0059261_0245 - pseudouridine synthase, at 235,174 to 236,376
_0245
Position (kb) 234
235
236 Strain fitness (log2 ratio) -2
-1
0
1
2 at 233.797 kb on + strand, within Ga0059261_0243 at 233.798 kb on - strand, within Ga0059261_0243 at 233.798 kb on - strand, within Ga0059261_0243 at 233.798 kb on - strand, within Ga0059261_0243 at 233.866 kb on + strand, within Ga0059261_0243 at 233.866 kb on + strand, within Ga0059261_0243 at 233.866 kb on + strand, within Ga0059261_0243 at 233.866 kb on + strand, within Ga0059261_0243 at 233.867 kb on - strand, within Ga0059261_0243 at 233.867 kb on - strand, within Ga0059261_0243 at 233.867 kb on - strand, within Ga0059261_0243 at 233.867 kb on - strand, within Ga0059261_0243 at 233.899 kb on + strand, within Ga0059261_0243 at 233.900 kb on - strand, within Ga0059261_0243 at 233.900 kb on - strand, within Ga0059261_0243 at 234.043 kb on + strand, within Ga0059261_0243 at 234.043 kb on + strand, within Ga0059261_0243 at 234.043 kb on + strand, within Ga0059261_0243 at 234.043 kb on + strand, within Ga0059261_0243 at 234.043 kb on + strand, within Ga0059261_0243 at 234.043 kb on + strand, within Ga0059261_0243 at 234.043 kb on + strand, within Ga0059261_0243 at 234.043 kb on + strand, within Ga0059261_0243 at 234.043 kb on + strand, within Ga0059261_0243 at 234.043 kb on + strand, within Ga0059261_0243 at 234.044 kb on - strand, within Ga0059261_0243 at 234.044 kb on - strand, within Ga0059261_0243 at 234.044 kb on - strand, within Ga0059261_0243 at 234.044 kb on - strand at 234.044 kb on - strand, within Ga0059261_0243 at 234.044 kb on - strand at 234.088 kb on + strand, within Ga0059261_0243 at 234.089 kb on - strand, within Ga0059261_0243 at 234.146 kb on - strand, within Ga0059261_0243 at 234.146 kb on - strand, within Ga0059261_0243 at 234.370 kb on + strand, within Ga0059261_0243 at 234.370 kb on + strand at 234.370 kb on + strand, within Ga0059261_0243 at 234.371 kb on - strand, within Ga0059261_0243 at 234.371 kb on - strand at 234.371 kb on - strand, within Ga0059261_0243 at 234.371 kb on - strand, within Ga0059261_0243 at 234.410 kb on + strand, within Ga0059261_0243 at 234.410 kb on + strand, within Ga0059261_0243 at 234.410 kb on + strand, within Ga0059261_0243 at 234.411 kb on - strand at 234.411 kb on - strand at 234.411 kb on - strand at 234.411 kb on - strand at 234.520 kb on + strand at 234.611 kb on - strand at 234.747 kb on + strand, within Ga0059261_0244 at 234.747 kb on + strand, within Ga0059261_0244 at 234.965 kb on - strand, within Ga0059261_0244 at 235.086 kb on + strand at 235.086 kb on + strand at 235.086 kb on + strand at 235.087 kb on - strand at 235.105 kb on - strand at 235.105 kb on - strand at 235.161 kb on + strand at 235.162 kb on - strand at 235.466 kb on - strand, within Ga0059261_0245 at 235.607 kb on - strand, within Ga0059261_0245 at 235.621 kb on + strand, within Ga0059261_0245 at 235.687 kb on + strand, within Ga0059261_0245
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 40 mM remove 233,797 + Ga0059261_0243 0.53 -0.3 233,798 - Ga0059261_0243 0.53 +0.7 233,798 - Ga0059261_0243 0.53 -0.8 233,798 - Ga0059261_0243 0.53 +0.2 233,866 + Ga0059261_0243 0.57 +0.3 233,866 + Ga0059261_0243 0.57 -1.1 233,866 + Ga0059261_0243 0.57 -0.4 233,866 + Ga0059261_0243 0.57 +0.1 233,867 - Ga0059261_0243 0.57 +0.5 233,867 - Ga0059261_0243 0.57 +0.9 233,867 - Ga0059261_0243 0.57 -0.5 233,867 - Ga0059261_0243 0.57 -0.6 233,899 + Ga0059261_0243 0.59 -0.2 233,900 - Ga0059261_0243 0.59 -1.0 233,900 - Ga0059261_0243 0.59 +0.3 234,043 + Ga0059261_0243 0.68 +0.3 234,043 + Ga0059261_0243 0.68 +0.0 234,043 + Ga0059261_0243 0.68 -0.3 234,043 + Ga0059261_0243 0.68 +0.2 234,043 + Ga0059261_0243 0.68 +1.9 234,043 + Ga0059261_0243 0.68 -0.2 234,043 + Ga0059261_0243 0.68 -0.1 234,043 + Ga0059261_0243 0.68 +2.2 234,043 + Ga0059261_0243 0.68 -0.1 234,043 + Ga0059261_0243 0.68 +1.2 234,044 - Ga0059261_0243 0.68 +0.3 234,044 - Ga0059261_0243 0.68 -0.7 234,044 - Ga0059261_0243 0.68 +0.1 234,044 - +0.9 234,044 - Ga0059261_0243 0.68 -0.0 234,044 - -0.1 234,088 + Ga0059261_0243 0.71 -1.1 234,089 - Ga0059261_0243 0.71 +0.3 234,146 - Ga0059261_0243 0.74 -0.1 234,146 - Ga0059261_0243 0.74 +0.5 234,370 + Ga0059261_0243 0.88 -0.5 234,370 + +0.3 234,370 + Ga0059261_0243 0.88 -1.4 234,371 - Ga0059261_0243 0.88 +1.1 234,371 - -0.7 234,371 - Ga0059261_0243 0.88 +0.3 234,371 - Ga0059261_0243 0.88 -0.2 234,410 + Ga0059261_0243 0.90 -2.1 234,410 + Ga0059261_0243 0.90 +0.9 234,410 + Ga0059261_0243 0.90 +0.2 234,411 - +1.5 234,411 - +0.4 234,411 - -0.5 234,411 - -0.4 234,520 + -0.0 234,611 - +0.0 234,747 + Ga0059261_0244 0.25 +0.1 234,747 + Ga0059261_0244 0.25 +0.2 234,965 - Ga0059261_0244 0.76 +0.5 235,086 + +0.1 235,086 + -0.3 235,086 + +0.9 235,087 - +0.6 235,105 - -0.6 235,105 - +0.4 235,161 + -2.4 235,162 - -1.3 235,466 - Ga0059261_0245 0.24 -0.8 235,607 - Ga0059261_0245 0.36 -1.6 235,621 + Ga0059261_0245 0.37 -1.0 235,687 + Ga0059261_0245 0.43 -0.4
Or see this region's nucleotide sequence