Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01906 and CCNA_01907 are separated by 40 nucleotides CCNA_01907 and CCNA_01908 overlap by 1 nucleotides CCNA_01908 and CCNA_01909 are separated by 55 nucleotides
CCNA_01906: CCNA_01906 - allophanate hydrolase, at 2,050,519 to 2,052,303
_01906
CCNA_01907: CCNA_01907 - ABC transporter ATP-binding protein, at 2,052,344 to 2,053,105
_01907
CCNA_01908: CCNA_01908 - ABC-type transporter, permease component, at 2,053,105 to 2,053,920
_01908
CCNA_01909: CCNA_01909 - ABC transporter substrate-binding protein, at 2,053,976 to 2,055,085
_01909
Position (kb)
2052
2053
2054 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2051.348 kb on + strand, within CCNA_01906 at 2051.349 kb on - strand, within CCNA_01906 at 2051.387 kb on + strand, within CCNA_01906 at 2051.430 kb on + strand, within CCNA_01906 at 2051.430 kb on + strand, within CCNA_01906 at 2051.438 kb on - strand, within CCNA_01906 at 2051.438 kb on - strand, within CCNA_01906 at 2051.438 kb on - strand, within CCNA_01906 at 2051.482 kb on - strand, within CCNA_01906 at 2051.487 kb on - strand, within CCNA_01906 at 2051.535 kb on - strand, within CCNA_01906 at 2051.537 kb on + strand, within CCNA_01906 at 2051.540 kb on - strand, within CCNA_01906 at 2051.542 kb on + strand, within CCNA_01906 at 2051.564 kb on + strand, within CCNA_01906 at 2051.595 kb on - strand, within CCNA_01906 at 2051.610 kb on - strand, within CCNA_01906 at 2051.618 kb on - strand, within CCNA_01906 at 2051.674 kb on - strand, within CCNA_01906 at 2051.686 kb on + strand, within CCNA_01906 at 2051.686 kb on - strand, within CCNA_01906 at 2051.749 kb on + strand, within CCNA_01906 at 2051.789 kb on + strand, within CCNA_01906 at 2051.833 kb on + strand, within CCNA_01906 at 2051.833 kb on + strand, within CCNA_01906 at 2051.833 kb on + strand, within CCNA_01906 at 2051.833 kb on + strand, within CCNA_01906 at 2051.833 kb on + strand, within CCNA_01906 at 2051.833 kb on + strand, within CCNA_01906 at 2051.833 kb on + strand, within CCNA_01906 at 2051.841 kb on - strand, within CCNA_01906 at 2051.841 kb on - strand, within CCNA_01906 at 2051.841 kb on - strand, within CCNA_01906 at 2051.882 kb on - strand, within CCNA_01906 at 2051.915 kb on + strand, within CCNA_01906 at 2051.950 kb on + strand, within CCNA_01906 at 2051.964 kb on - strand, within CCNA_01906 at 2051.964 kb on - strand, within CCNA_01906 at 2051.984 kb on + strand, within CCNA_01906 at 2051.991 kb on + strand, within CCNA_01906 at 2051.992 kb on - strand, within CCNA_01906 at 2052.013 kb on + strand, within CCNA_01906 at 2052.013 kb on + strand, within CCNA_01906 at 2052.027 kb on + strand, within CCNA_01906 at 2052.027 kb on + strand, within CCNA_01906 at 2052.035 kb on - strand, within CCNA_01906 at 2052.040 kb on + strand, within CCNA_01906 at 2052.040 kb on + strand, within CCNA_01906 at 2052.040 kb on + strand, within CCNA_01906 at 2052.048 kb on - strand, within CCNA_01906 at 2052.048 kb on - strand, within CCNA_01906 at 2052.059 kb on + strand, within CCNA_01906 at 2052.077 kb on - strand, within CCNA_01906 at 2052.094 kb on - strand, within CCNA_01906 at 2052.137 kb on + strand at 2052.146 kb on + strand at 2052.149 kb on - strand at 2052.232 kb on + strand at 2052.240 kb on - strand at 2052.240 kb on - strand at 2052.240 kb on - strand at 2052.240 kb on - strand at 2052.262 kb on - strand at 2052.292 kb on + strand at 2052.292 kb on + strand at 2052.367 kb on + strand at 2052.375 kb on - strand at 2052.375 kb on - strand at 2052.390 kb on - strand at 2052.395 kb on - strand at 2052.395 kb on - strand at 2052.395 kb on - strand at 2052.395 kb on - strand at 2052.404 kb on + strand at 2052.404 kb on + strand at 2052.404 kb on + strand at 2052.438 kb on - strand, within CCNA_01907 at 2052.453 kb on - strand, within CCNA_01907 at 2052.487 kb on + strand, within CCNA_01907 at 2052.495 kb on - strand, within CCNA_01907 at 2052.506 kb on + strand, within CCNA_01907 at 2052.552 kb on + strand, within CCNA_01907 at 2052.558 kb on - strand, within CCNA_01907 at 2052.593 kb on - strand, within CCNA_01907 at 2052.633 kb on + strand, within CCNA_01907 at 2052.633 kb on + strand, within CCNA_01907 at 2052.641 kb on - strand, within CCNA_01907 at 2052.646 kb on - strand, within CCNA_01907 at 2052.651 kb on - strand, within CCNA_01907 at 2052.651 kb on - strand, within CCNA_01907 at 2052.675 kb on - strand, within CCNA_01907 at 2052.675 kb on - strand, within CCNA_01907 at 2052.700 kb on + strand, within CCNA_01907 at 2052.716 kb on - strand, within CCNA_01907 at 2052.746 kb on - strand, within CCNA_01907 at 2052.749 kb on + strand, within CCNA_01907 at 2052.749 kb on + strand, within CCNA_01907 at 2052.749 kb on + strand, within CCNA_01907 at 2052.749 kb on + strand, within CCNA_01907 at 2052.749 kb on + strand, within CCNA_01907 at 2052.749 kb on + strand, within CCNA_01907 at 2052.757 kb on - strand, within CCNA_01907 at 2052.757 kb on - strand, within CCNA_01907 at 2052.757 kb on - strand, within CCNA_01907 at 2052.757 kb on - strand, within CCNA_01907 at 2052.757 kb on - strand, within CCNA_01907 at 2052.793 kb on + strand, within CCNA_01907 at 2052.804 kb on + strand, within CCNA_01907 at 2052.858 kb on + strand, within CCNA_01907 at 2052.874 kb on + strand, within CCNA_01907 at 2052.884 kb on + strand, within CCNA_01907 at 2052.909 kb on + strand, within CCNA_01907 at 2052.915 kb on - strand, within CCNA_01907 at 2052.917 kb on - strand, within CCNA_01907 at 2052.985 kb on - strand, within CCNA_01907 at 2053.027 kb on - strand, within CCNA_01907 at 2053.082 kb on - strand at 2053.126 kb on + strand at 2053.134 kb on - strand at 2053.134 kb on - strand at 2053.140 kb on - strand at 2053.155 kb on + strand at 2053.240 kb on + strand, within CCNA_01908 at 2053.290 kb on - strand, within CCNA_01908 at 2053.311 kb on - strand, within CCNA_01908 at 2053.385 kb on - strand, within CCNA_01908 at 2053.398 kb on + strand, within CCNA_01908 at 2053.406 kb on + strand, within CCNA_01908 at 2053.412 kb on + strand, within CCNA_01908 at 2053.414 kb on - strand, within CCNA_01908 at 2053.428 kb on - strand, within CCNA_01908 at 2053.522 kb on + strand, within CCNA_01908 at 2053.620 kb on + strand, within CCNA_01908 at 2053.628 kb on - strand, within CCNA_01908 at 2053.628 kb on - strand, within CCNA_01908 at 2053.634 kb on - strand, within CCNA_01908 at 2053.644 kb on + strand, within CCNA_01908 at 2053.669 kb on + strand, within CCNA_01908 at 2053.669 kb on + strand at 2053.742 kb on - strand, within CCNA_01908 at 2053.753 kb on - strand, within CCNA_01908 at 2053.760 kb on + strand, within CCNA_01908 at 2053.819 kb on + strand, within CCNA_01908 at 2053.840 kb on + strand at 2053.923 kb on + strand at 2053.941 kb on - strand at 2053.966 kb on + strand at 2054.034 kb on + strand at 2054.040 kb on - strand at 2054.045 kb on + strand at 2054.045 kb on + strand at 2054.045 kb on + strand at 2054.053 kb on - strand at 2054.053 kb on - strand at 2054.053 kb on - strand at 2054.054 kb on - strand at 2054.054 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 2,051,348 + CCNA_01906 0.46 +0.9 2,051,349 - CCNA_01906 0.46 -1.1 2,051,387 + CCNA_01906 0.49 -0.3 2,051,430 + CCNA_01906 0.51 -2.3 2,051,430 + CCNA_01906 0.51 -0.9 2,051,438 - CCNA_01906 0.51 -1.2 2,051,438 - CCNA_01906 0.51 -0.5 2,051,438 - CCNA_01906 0.51 -1.2 2,051,482 - CCNA_01906 0.54 +0.7 2,051,487 - CCNA_01906 0.54 -0.6 2,051,535 - CCNA_01906 0.57 -2.2 2,051,537 + CCNA_01906 0.57 -1.3 2,051,540 - CCNA_01906 0.57 -0.3 2,051,542 + CCNA_01906 0.57 -2.1 2,051,564 + CCNA_01906 0.59 +1.5 2,051,595 - CCNA_01906 0.60 +1.0 2,051,610 - CCNA_01906 0.61 +0.5 2,051,618 - CCNA_01906 0.62 -1.3 2,051,674 - CCNA_01906 0.65 -0.9 2,051,686 + CCNA_01906 0.65 -1.1 2,051,686 - CCNA_01906 0.65 -1.9 2,051,749 + CCNA_01906 0.69 +0.5 2,051,789 + CCNA_01906 0.71 -1.0 2,051,833 + CCNA_01906 0.74 -0.2 2,051,833 + CCNA_01906 0.74 +0.9 2,051,833 + CCNA_01906 0.74 -2.0 2,051,833 + CCNA_01906 0.74 -0.2 2,051,833 + CCNA_01906 0.74 +0.9 2,051,833 + CCNA_01906 0.74 +0.2 2,051,833 + CCNA_01906 0.74 -0.2 2,051,841 - CCNA_01906 0.74 -1.9 2,051,841 - CCNA_01906 0.74 -2.1 2,051,841 - CCNA_01906 0.74 -1.7 2,051,882 - CCNA_01906 0.76 -1.3 2,051,915 + CCNA_01906 0.78 -0.7 2,051,950 + CCNA_01906 0.80 -2.4 2,051,964 - CCNA_01906 0.81 -0.3 2,051,964 - CCNA_01906 0.81 +1.6 2,051,984 + CCNA_01906 0.82 -1.0 2,051,991 + CCNA_01906 0.82 -0.5 2,051,992 - CCNA_01906 0.83 -1.1 2,052,013 + CCNA_01906 0.84 -0.5 2,052,013 + CCNA_01906 0.84 -1.8 2,052,027 + CCNA_01906 0.84 -2.9 2,052,027 + CCNA_01906 0.84 +0.2 2,052,035 - CCNA_01906 0.85 -1.6 2,052,040 + CCNA_01906 0.85 -0.7 2,052,040 + CCNA_01906 0.85 -0.6 2,052,040 + CCNA_01906 0.85 -0.2 2,052,048 - CCNA_01906 0.86 -2.7 2,052,048 - CCNA_01906 0.86 +0.6 2,052,059 + CCNA_01906 0.86 +0.1 2,052,077 - CCNA_01906 0.87 -0.8 2,052,094 - CCNA_01906 0.88 -2.1 2,052,137 + -1.8 2,052,146 + +1.5 2,052,149 - -1.4 2,052,232 + -3.0 2,052,240 - -1.5 2,052,240 - -2.5 2,052,240 - +1.7 2,052,240 - -0.5 2,052,262 - -0.5 2,052,292 + -1.2 2,052,292 + +0.4 2,052,367 + -0.1 2,052,375 - -0.4 2,052,375 - -1.1 2,052,390 - +2.6 2,052,395 - -0.5 2,052,395 - +0.1 2,052,395 - -0.2 2,052,395 - -0.4 2,052,404 + -1.9 2,052,404 + +0.7 2,052,404 + -1.6 2,052,438 - CCNA_01907 0.12 -0.7 2,052,453 - CCNA_01907 0.14 -2.6 2,052,487 + CCNA_01907 0.19 -2.6 2,052,495 - CCNA_01907 0.20 +1.9 2,052,506 + CCNA_01907 0.21 -0.3 2,052,552 + CCNA_01907 0.27 -1.9 2,052,558 - CCNA_01907 0.28 -1.3 2,052,593 - CCNA_01907 0.33 -1.9 2,052,633 + CCNA_01907 0.38 -2.5 2,052,633 + CCNA_01907 0.38 -2.5 2,052,641 - CCNA_01907 0.39 -0.3 2,052,646 - CCNA_01907 0.40 -1.0 2,052,651 - CCNA_01907 0.40 -0.3 2,052,651 - CCNA_01907 0.40 -1.1 2,052,675 - CCNA_01907 0.43 -1.1 2,052,675 - CCNA_01907 0.43 -1.7 2,052,700 + CCNA_01907 0.47 -2.7 2,052,716 - CCNA_01907 0.49 -3.0 2,052,746 - CCNA_01907 0.53 -0.5 2,052,749 + CCNA_01907 0.53 -2.5 2,052,749 + CCNA_01907 0.53 +0.3 2,052,749 + CCNA_01907 0.53 -2.4 2,052,749 + CCNA_01907 0.53 +0.3 2,052,749 + CCNA_01907 0.53 -1.5 2,052,749 + CCNA_01907 0.53 -2.7 2,052,757 - CCNA_01907 0.54 -1.2 2,052,757 - CCNA_01907 0.54 +0.9 2,052,757 - CCNA_01907 0.54 +0.5 2,052,757 - CCNA_01907 0.54 -1.0 2,052,757 - CCNA_01907 0.54 -1.1 2,052,793 + CCNA_01907 0.59 -0.7 2,052,804 + CCNA_01907 0.60 -0.5 2,052,858 + CCNA_01907 0.67 +0.1 2,052,874 + CCNA_01907 0.70 -1.3 2,052,884 + CCNA_01907 0.71 -2.5 2,052,909 + CCNA_01907 0.74 -2.2 2,052,915 - CCNA_01907 0.75 -0.1 2,052,917 - CCNA_01907 0.75 -0.7 2,052,985 - CCNA_01907 0.84 -0.7 2,053,027 - CCNA_01907 0.90 -2.0 2,053,082 - +0.1 2,053,126 + -2.8 2,053,134 - -1.6 2,053,134 - -1.1 2,053,140 - -0.5 2,053,155 + -1.0 2,053,240 + CCNA_01908 0.17 -1.2 2,053,290 - CCNA_01908 0.23 -1.1 2,053,311 - CCNA_01908 0.25 -3.3 2,053,385 - CCNA_01908 0.34 -1.2 2,053,398 + CCNA_01908 0.36 -1.7 2,053,406 + CCNA_01908 0.37 -0.3 2,053,412 + CCNA_01908 0.38 -2.1 2,053,414 - CCNA_01908 0.38 -0.8 2,053,428 - CCNA_01908 0.40 -3.3 2,053,522 + CCNA_01908 0.51 -0.1 2,053,620 + CCNA_01908 0.63 +0.1 2,053,628 - CCNA_01908 0.64 -1.4 2,053,628 - CCNA_01908 0.64 -1.8 2,053,634 - CCNA_01908 0.65 -0.6 2,053,644 + CCNA_01908 0.66 -0.5 2,053,669 + CCNA_01908 0.69 +0.8 2,053,669 + +0.9 2,053,742 - CCNA_01908 0.78 -0.5 2,053,753 - CCNA_01908 0.79 +1.0 2,053,760 + CCNA_01908 0.80 -0.8 2,053,819 + CCNA_01908 0.88 +0.5 2,053,840 + -0.4 2,053,923 + +1.1 2,053,941 - -0.3 2,053,966 + -1.5 2,054,034 + +0.1 2,054,040 - -2.1 2,054,045 + -1.1 2,054,045 + -2.6 2,054,045 + -0.6 2,054,053 - -1.2 2,054,053 - -1.2 2,054,053 - -0.3 2,054,054 - +0.6 2,054,054 - -1.4
Or see this region's nucleotide sequence