Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29185

Experiment: Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS29175 and BPHYT_RS29180 are separated by 13 nucleotidesBPHYT_RS29180 and BPHYT_RS29185 overlap by 1 nucleotidesBPHYT_RS29185 and BPHYT_RS29190 are separated by 9 nucleotides BPHYT_RS29175: BPHYT_RS29175 - ABC transporter ATP-binding protein, at 2,101,194 to 2,102,366 _RS29175 BPHYT_RS29180: BPHYT_RS29180 - sugar ABC transporter permease, at 2,102,380 to 2,103,300 _RS29180 BPHYT_RS29185: BPHYT_RS29185 - sugar ABC transporter permease, at 2,103,300 to 2,104,244 _RS29185 BPHYT_RS29190: BPHYT_RS29190 - sugar ABC transporter substrate-binding protein, at 2,104,254 to 2,105,492 _RS29190 Position (kb) 2103 2104 2105Strain fitness (log2 ratio) -1 0 1at 2102.361 kb on - strandat 2102.439 kb on - strandat 2102.491 kb on - strand, within BPHYT_RS29180at 2102.492 kb on + strand, within BPHYT_RS29180at 2102.732 kb on + strand, within BPHYT_RS29180at 2103.155 kb on + strand, within BPHYT_RS29180at 2103.965 kb on - strand, within BPHYT_RS29185at 2105.096 kb on - strand, within BPHYT_RS29190

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.25 mM
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2,102,361 - +0.1
2,102,439 - -0.3
2,102,491 - BPHYT_RS29180 0.12 +0.0
2,102,492 + BPHYT_RS29180 0.12 +0.7
2,102,732 + BPHYT_RS29180 0.38 -0.1
2,103,155 + BPHYT_RS29180 0.84 +0.2
2,103,965 - BPHYT_RS29185 0.70 -0.8
2,105,096 - BPHYT_RS29190 0.68 -0.3

Or see this region's nucleotide sequence